ClaRNA

Doublet info:

Details

Nucleotide types: AG
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 3U5H:51120:51098

Extra

PDB:
ATOM 1 O3' A A1119 107.576 -5.725 270.004 1.00 31.08 O
ATOM 2 P A A1120 108.364 -5.006 271.211 1.00 33.00 P
ATOM 3 OP1 A A1120 108.947 -6.075 272.028 1.00 33.04 O
ATOM 4 OP2 A A1120 107.443 -4.040 271.872 1.00 33.19 O
ATOM 5 O5' A A1120 109.504 -4.222 270.445 1.00 32.64 O
ATOM 6 C5' A A1120 110.663 -4.865 270.040 1.00 32.42 C
ATOM 7 C4' A A1120 111.268 -4.168 268.894 1.00 32.15 C
ATOM 8 O4' A A1120 110.324 -4.126 267.831 1.00 32.23 O
ATOM 9 C3' A A1120 111.642 -2.716 269.119 1.00 32.01 C
ATOM 10 O3' A A1120 112.921 -2.587 269.717 1.00 31.83 O
ATOM 11 C2' A A1120 111.634 -2.183 267.723 1.00 31.86 C
ATOM 12 O2' A A1120 112.802 -2.612 267.078 1.00 31.61 O
ATOM 13 C1' A A1120 110.460 -2.922 267.114 1.00 32.07 C
ATOM 14 N9 A A1120 109.246 -2.125 267.278 1.00 32.28 N
ATOM 15 C8 A A1120 108.455 -2.135 268.378 1.00 32.53 C
ATOM 16 N7 A A1120 107.539 -1.252 268.300 1.00 32.66 N
ATOM 17 C5 A A1120 107.739 -0.598 267.117 1.00 32.49 C
ATOM 18 C6 A A1120 107.047 0.454 266.527 1.00 32.54 C
ATOM 19 N6 A A1120 105.964 1.009 267.097 1.00 32.79 N
ATOM 20 N1 A A1120 107.484 0.872 265.319 1.00 32.34 N
ATOM 21 C2 A A1120 108.546 0.267 264.760 1.00 32.10 C
ATOM 22 N3 A A1120 109.279 -0.743 265.238 1.00 32.04 N
ATOM 23 C4 A A1120 108.810 -1.122 266.451 1.00 32.24 C
ATOM 24 P G A1121 113.202 -1.549 270.914 1.00 31.08 P
ATOM 25 OP1 G A1121 114.650 -1.619 271.170 1.00 30.85 O
ATOM 26 OP2 G A1121 112.300 -1.868 272.016 1.00 31.38 O
ATOM 27 O5' G A1121 112.799 -0.145 270.288 1.00 31.02 O
TER

ATOM 1 O3' G B1097 107.676 3.398 260.162 1.00 33.54 O
ATOM 2 P G B1098 108.947 4.387 260.234 1.00 32.79 P
ATOM 3 OP1 G B1098 108.428 5.634 260.768 1.00 32.90 O
ATOM 4 OP2 G B1098 109.622 4.413 258.945 1.00 32.61 O
ATOM 5 O5' G B1098 109.890 3.703 261.281 1.00 32.68 O
ATOM 6 C5' G B1098 109.604 3.816 262.646 1.00 32.81 C
ATOM 7 C4' G B1098 110.602 3.105 263.479 1.00 32.69 C
ATOM 8 O4' G B1098 110.790 1.754 263.004 1.00 32.66 O
ATOM 9 C3' G B1098 112.004 3.658 263.467 1.00 32.41 C
ATOM 10 O3' G B1098 112.132 4.865 264.164 1.00 32.41 O
ATOM 11 C2' G B1098 112.761 2.511 264.090 1.00 32.34 C
ATOM 12 O2' G B1098 112.499 2.448 265.487 1.00 32.49 O
ATOM 13 C1' G B1098 112.073 1.325 263.400 1.00 32.47 C
ATOM 14 N9 G B1098 112.810 0.901 262.215 1.00 32.28 N
ATOM 15 C8 G B1098 112.446 1.136 260.930 1.00 32.27 C
ATOM 16 N7 G B1098 113.292 0.627 260.080 1.00 32.10 N
ATOM 17 C5 G B1098 114.270 0.071 260.871 1.00 31.99 C
ATOM 18 C6 G B1098 115.436 -0.633 260.517 1.00 31.80 C
ATOM 19 O6 G B1098 115.812 -0.828 259.375 1.00 31.70 O
ATOM 20 N1 G B1098 116.185 -1.122 261.615 1.00 31.76 N
ATOM 21 C2 G B1098 115.812 -0.900 262.915 1.00 31.88 C
ATOM 22 N2 G B1098 116.580 -1.371 263.872 1.00 31.83 N
ATOM 23 N3 G B1098 114.719 -0.248 263.227 1.00 32.05 N
ATOM 24 C4 G B1098 113.981 0.201 262.185 1.00 32.10 C
ATOM 25 P G B1099 113.317 5.861 263.804 1.00 35.54 P
ATOM 26 OP1 G B1099 113.345 6.892 264.851 1.00 35.60 O
ATOM 27 OP2 G B1099 113.171 6.252 262.409 1.00 35.48 O
ATOM 28 O5' G B1099 114.579 4.955 263.948 1.00 35.35 O
TER

Atoms:
OP1: (108.947,-6.075,272.028)
OP2: (107.443,-4.040,271.872)
C3': (111.642,-2.716,269.119)
C1': (110.460,-2.922,267.114)
C5': (110.663,-4.865,270.040)
O4': (110.324,-4.126,267.831)
C8: (108.455,-2.135,268.378)
O2': (112.802,-2.612,267.078)
C6: (107.047,0.454,266.527)
C5: (107.739,-0.598,267.117)
C4: (108.810,-1.122,266.451)
P: (108.364,-5.006,271.211)
C4': (111.268,-4.168,268.894)
C2': (111.634,-2.183,267.723)
C2: (108.546,0.267,264.760)
N1: (107.484,0.872,265.319)
N3: (109.279,-0.743,265.238)
N6: (105.964,1.009,267.097)
N7: (107.539,-1.252,268.300)
N9: (109.246,-2.125,267.278)
O5': (109.504,-4.222,270.445)
O3': (112.921,-2.587,269.717)
OP1: (108.428,5.634,260.768)
OP2: (109.622,4.413,258.945)
C3': (112.004,3.658,263.467)
C1': (112.073,1.325,263.400)
C5': (109.604,3.816,262.646)
O6: (115.812,-0.828,259.375)
O4': (110.790,1.754,263.004)
C8: (112.446,1.136,260.930)
C2: (115.812,-0.900,262.915)
C6: (115.436,-0.633,260.517)
C5: (114.270,0.071,260.871)
C4: (113.981,0.201,262.185)
P: (108.947,4.387,260.234)
C4': (110.602,3.105,263.479)
C2': (112.761,2.511,264.090)
O2': (112.499,2.448,265.487)
N1: (116.185,-1.122,261.615)
N2: (116.580,-1.371,263.872)
N3: (114.719,-0.248,263.227)
N7: (113.292,0.627,260.080)
N9: (112.810,0.901,262.215)
O5': (109.890,3.703,261.281)
O3': (112.132,4.865,264.164)
Image (generated by PyMOL):
PyMOL image
show in jmol