Doublet info:
Details
Nucleotide types:
AG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:01065:01217
Extra
PDB:
ATOM 1 O3' C A1064 17.067 112.174 117.171 1.00 42.08 O
ATOM 2 P A A1065 15.542 112.522 116.828 1.00 40.51 P
ATOM 3 OP1 A A1065 15.525 113.616 115.833 1.00 39.36 O
ATOM 4 OP2 A A1065 14.811 112.685 118.109 1.00 41.48 O
ATOM 5 O5' A A1065 15.057 111.181 116.128 1.00 39.47 O
ATOM 6 C5' A A1065 13.883 111.122 115.318 1.00 36.35 C
ATOM 7 C4' A A1065 13.701 109.711 114.828 1.00 38.98 C
ATOM 8 O4' A A1065 14.843 109.351 114.005 1.00 39.42 O
ATOM 9 C3' A A1065 13.704 108.687 115.950 1.00 39.57 C
ATOM 10 O3' A A1065 12.395 108.542 116.472 1.00 41.78 O
ATOM 11 C2' A A1065 14.218 107.428 115.266 1.00 38.47 C
ATOM 12 O2' A A1065 13.211 106.750 114.549 1.00 37.63 O
ATOM 13 C1' A A1065 15.233 108.015 114.279 1.00 37.93 C
ATOM 14 N9 A A1065 16.622 108.041 114.743 1.00 37.52 N
ATOM 15 C8 A A1065 17.298 109.091 115.323 1.00 36.86 C
ATOM 16 N7 A A1065 18.557 108.833 115.575 1.00 37.70 N
ATOM 17 C5 A A1065 18.720 107.521 115.143 1.00 36.75 C
ATOM 18 C6 A A1065 19.838 106.666 115.113 1.00 36.75 C
ATOM 19 N6 A A1065 21.049 107.017 115.540 1.00 36.91 N
ATOM 20 N1 A A1065 19.665 105.422 114.620 1.00 37.76 N
ATOM 21 C2 A A1065 18.449 105.071 114.188 1.00 38.00 C
ATOM 22 N3 A A1065 17.327 105.784 114.159 1.00 37.31 N
ATOM 23 C4 A A1065 17.533 107.016 114.652 1.00 36.24 C
ATOM 24 P A A1066 12.101 108.904 118.005 1.00 43.44 P
ATOM 25 OP1 A A1066 10.719 109.441 118.082 1.00 44.71 O
ATOM 26 OP2 A A1066 13.225 109.718 118.530 1.00 43.75 O
ATOM 27 O5' A A1066 12.139 107.482 118.707 1.00 40.30 O
TER
ATOM 1 O3' C B1216 12.776 104.238 112.941 1.00 39.30 O
ATOM 2 P G B1217 12.807 104.014 111.355 1.00 39.31 P
ATOM 3 OP1 G B1217 12.553 105.344 110.756 1.00 37.91 O
ATOM 4 OP2 G B1217 11.940 102.858 111.000 1.00 37.82 O
ATOM 5 O5' G B1217 14.311 103.597 111.049 1.00 41.55 O
ATOM 6 C5' G B1217 15.400 104.526 111.227 1.00 40.39 C
ATOM 7 C4' G B1217 16.710 103.828 110.957 1.00 40.75 C
ATOM 8 O4' G B1217 16.886 102.759 111.922 1.00 41.21 O
ATOM 9 C3' G B1217 16.767 103.144 109.601 1.00 40.21 C
ATOM 10 O3' G B1217 17.177 104.073 108.601 1.00 38.88 O
ATOM 11 C2' G B1217 17.757 102.008 109.834 1.00 40.26 C
ATOM 12 O2' G B1217 19.104 102.427 109.766 1.00 40.79 O
ATOM 13 C1' G B1217 17.434 101.619 111.281 1.00 40.81 C
ATOM 14 N9 G B1217 16.484 100.522 111.430 1.00 40.79 N
ATOM 15 C8 G B1217 15.112 100.613 111.444 1.00 40.50 C
ATOM 16 N7 G B1217 14.525 99.463 111.625 1.00 39.94 N
ATOM 17 C5 G B1217 15.567 98.555 111.732 1.00 40.01 C
ATOM 18 C6 G B1217 15.545 97.155 111.945 1.00 41.04 C
ATOM 19 O6 G B1217 14.566 96.414 112.095 1.00 45.38 O
ATOM 20 N1 G B1217 16.829 96.621 111.985 1.00 40.64 N
ATOM 21 C2 G B1217 17.989 97.343 111.846 1.00 39.81 C
ATOM 22 N2 G B1217 19.131 96.648 111.931 1.00 36.47 N
ATOM 23 N3 G B1217 18.024 98.653 111.646 1.00 40.89 N
ATOM 24 C4 G B1217 16.785 99.190 111.603 1.00 41.16 C
ATOM 25 P A B1218 16.560 103.982 107.121 1.00 41.84 P
ATOM 26 OP1 A B1218 16.779 105.297 106.461 1.00 39.18 O
ATOM 27 OP2 A B1218 15.182 103.412 107.178 1.00 42.54 O
ATOM 28 O5' A B1218 17.484 102.904 106.409 1.00 38.90 O
TER
ATOM 2 P A A1065 15.542 112.522 116.828 1.00 40.51 P
ATOM 3 OP1 A A1065 15.525 113.616 115.833 1.00 39.36 O
ATOM 4 OP2 A A1065 14.811 112.685 118.109 1.00 41.48 O
ATOM 5 O5' A A1065 15.057 111.181 116.128 1.00 39.47 O
ATOM 6 C5' A A1065 13.883 111.122 115.318 1.00 36.35 C
ATOM 7 C4' A A1065 13.701 109.711 114.828 1.00 38.98 C
ATOM 8 O4' A A1065 14.843 109.351 114.005 1.00 39.42 O
ATOM 9 C3' A A1065 13.704 108.687 115.950 1.00 39.57 C
ATOM 10 O3' A A1065 12.395 108.542 116.472 1.00 41.78 O
ATOM 11 C2' A A1065 14.218 107.428 115.266 1.00 38.47 C
ATOM 12 O2' A A1065 13.211 106.750 114.549 1.00 37.63 O
ATOM 13 C1' A A1065 15.233 108.015 114.279 1.00 37.93 C
ATOM 14 N9 A A1065 16.622 108.041 114.743 1.00 37.52 N
ATOM 15 C8 A A1065 17.298 109.091 115.323 1.00 36.86 C
ATOM 16 N7 A A1065 18.557 108.833 115.575 1.00 37.70 N
ATOM 17 C5 A A1065 18.720 107.521 115.143 1.00 36.75 C
ATOM 18 C6 A A1065 19.838 106.666 115.113 1.00 36.75 C
ATOM 19 N6 A A1065 21.049 107.017 115.540 1.00 36.91 N
ATOM 20 N1 A A1065 19.665 105.422 114.620 1.00 37.76 N
ATOM 21 C2 A A1065 18.449 105.071 114.188 1.00 38.00 C
ATOM 22 N3 A A1065 17.327 105.784 114.159 1.00 37.31 N
ATOM 23 C4 A A1065 17.533 107.016 114.652 1.00 36.24 C
ATOM 24 P A A1066 12.101 108.904 118.005 1.00 43.44 P
ATOM 25 OP1 A A1066 10.719 109.441 118.082 1.00 44.71 O
ATOM 26 OP2 A A1066 13.225 109.718 118.530 1.00 43.75 O
ATOM 27 O5' A A1066 12.139 107.482 118.707 1.00 40.30 O
TER
ATOM 1 O3' C B1216 12.776 104.238 112.941 1.00 39.30 O
ATOM 2 P G B1217 12.807 104.014 111.355 1.00 39.31 P
ATOM 3 OP1 G B1217 12.553 105.344 110.756 1.00 37.91 O
ATOM 4 OP2 G B1217 11.940 102.858 111.000 1.00 37.82 O
ATOM 5 O5' G B1217 14.311 103.597 111.049 1.00 41.55 O
ATOM 6 C5' G B1217 15.400 104.526 111.227 1.00 40.39 C
ATOM 7 C4' G B1217 16.710 103.828 110.957 1.00 40.75 C
ATOM 8 O4' G B1217 16.886 102.759 111.922 1.00 41.21 O
ATOM 9 C3' G B1217 16.767 103.144 109.601 1.00 40.21 C
ATOM 10 O3' G B1217 17.177 104.073 108.601 1.00 38.88 O
ATOM 11 C2' G B1217 17.757 102.008 109.834 1.00 40.26 C
ATOM 12 O2' G B1217 19.104 102.427 109.766 1.00 40.79 O
ATOM 13 C1' G B1217 17.434 101.619 111.281 1.00 40.81 C
ATOM 14 N9 G B1217 16.484 100.522 111.430 1.00 40.79 N
ATOM 15 C8 G B1217 15.112 100.613 111.444 1.00 40.50 C
ATOM 16 N7 G B1217 14.525 99.463 111.625 1.00 39.94 N
ATOM 17 C5 G B1217 15.567 98.555 111.732 1.00 40.01 C
ATOM 18 C6 G B1217 15.545 97.155 111.945 1.00 41.04 C
ATOM 19 O6 G B1217 14.566 96.414 112.095 1.00 45.38 O
ATOM 20 N1 G B1217 16.829 96.621 111.985 1.00 40.64 N
ATOM 21 C2 G B1217 17.989 97.343 111.846 1.00 39.81 C
ATOM 22 N2 G B1217 19.131 96.648 111.931 1.00 36.47 N
ATOM 23 N3 G B1217 18.024 98.653 111.646 1.00 40.89 N
ATOM 24 C4 G B1217 16.785 99.190 111.603 1.00 41.16 C
ATOM 25 P A B1218 16.560 103.982 107.121 1.00 41.84 P
ATOM 26 OP1 A B1218 16.779 105.297 106.461 1.00 39.18 O
ATOM 27 OP2 A B1218 15.182 103.412 107.178 1.00 42.54 O
ATOM 28 O5' A B1218 17.484 102.904 106.409 1.00 38.90 O
TER
Atoms:
OP1: (15.525,113.616,115.833)
OP2: (14.811,112.685,118.109)
C3': (13.704,108.687,115.950)
C1': (15.233,108.015,114.279)
C5': (13.883,111.122,115.318)
O4': (14.843,109.351,114.005)
C8: (17.298,109.091,115.323)
O2': (13.211,106.750,114.549)
C6: (19.838,106.666,115.113)
C5: (18.720,107.521,115.143)
C4: (17.533,107.016,114.652)
P: (15.542,112.522,116.828)
C4': (13.701,109.711,114.828)
C2': (14.218,107.428,115.266)
C2: (18.449,105.071,114.188)
N1: (19.665,105.422,114.620)
N3: (17.327,105.784,114.159)
N6: (21.049,107.017,115.540)
N7: (18.557,108.833,115.575)
N9: (16.622,108.041,114.743)
O5': (15.057,111.181,116.128)
O3': (12.395,108.542,116.472)
OP2: (14.811,112.685,118.109)
C3': (13.704,108.687,115.950)
C1': (15.233,108.015,114.279)
C5': (13.883,111.122,115.318)
O4': (14.843,109.351,114.005)
C8: (17.298,109.091,115.323)
O2': (13.211,106.750,114.549)
C6: (19.838,106.666,115.113)
C5: (18.720,107.521,115.143)
C4: (17.533,107.016,114.652)
P: (15.542,112.522,116.828)
C4': (13.701,109.711,114.828)
C2': (14.218,107.428,115.266)
C2: (18.449,105.071,114.188)
N1: (19.665,105.422,114.620)
N3: (17.327,105.784,114.159)
N6: (21.049,107.017,115.540)
N7: (18.557,108.833,115.575)
N9: (16.622,108.041,114.743)
O5': (15.057,111.181,116.128)
O3': (12.395,108.542,116.472)
OP1: (12.553,105.344,110.756)
OP2: (11.940,102.858,111.000)
C3': (16.767,103.144,109.601)
C1': (17.434,101.619,111.281)
C5': (15.400,104.526,111.227)
O6: (14.566,96.414,112.095)
O4': (16.886,102.759,111.922)
C8: (15.112,100.613,111.444)
C2: (17.989,97.343,111.846)
C6: (15.545,97.155,111.945)
C5: (15.567,98.555,111.732)
C4: (16.785,99.190,111.603)
P: (12.807,104.014,111.355)
C4': (16.710,103.828,110.957)
C2': (17.757,102.008,109.834)
O2': (19.104,102.427,109.766)
N1: (16.829,96.621,111.985)
N2: (19.131,96.648,111.931)
N3: (18.024,98.653,111.646)
N7: (14.525,99.463,111.625)
N9: (16.484,100.522,111.430)
O5': (14.311,103.597,111.049)
O3': (17.177,104.073,108.601)
OP2: (11.940,102.858,111.000)
C3': (16.767,103.144,109.601)
C1': (17.434,101.619,111.281)
C5': (15.400,104.526,111.227)
O6: (14.566,96.414,112.095)
O4': (16.886,102.759,111.922)
C8: (15.112,100.613,111.444)
C2: (17.989,97.343,111.846)
C6: (15.545,97.155,111.945)
C5: (15.567,98.555,111.732)
C4: (16.785,99.190,111.603)
P: (12.807,104.014,111.355)
C4': (16.710,103.828,110.957)
C2': (17.757,102.008,109.834)
O2': (19.104,102.427,109.766)
N1: (16.829,96.621,111.985)
N2: (19.131,96.648,111.931)
N3: (18.024,98.653,111.646)
N7: (14.525,99.463,111.625)
N9: (16.484,100.522,111.430)
O5': (14.311,103.597,111.049)
O3': (17.177,104.073,108.601)
Image (generated by PyMOL):