ClaRNA

Doublet info:

Details

Nucleotide types: AG
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 1YIJ:0554:01053

Extra

PDB:
ATOM 1 O3' A A 553 -0.785 91.445 97.880 1.00 47.47 O
ATOM 2 P A A 554 -0.899 90.901 99.386 1.00 48.23 P
ATOM 3 OP1 A A 554 -1.059 89.421 99.299 1.00 46.18 O
ATOM 4 OP2 A A 554 -1.908 91.717 100.113 1.00 47.89 O
ATOM 5 O5' A A 554 0.514 91.234 100.043 1.00 48.59 O
ATOM 6 C5' A A 554 1.729 90.616 99.564 1.00 45.41 C
ATOM 7 C4' A A 554 2.920 91.439 99.977 1.00 42.47 C
ATOM 8 O4' A A 554 2.793 92.770 99.411 1.00 42.74 O
ATOM 9 C3' A A 554 3.031 91.701 101.466 1.00 41.85 C
ATOM 10 O3' A A 554 3.628 90.615 102.142 1.00 41.12 O
ATOM 11 C2' A A 554 3.885 92.958 101.509 1.00 42.25 C
ATOM 12 O2' A A 554 5.258 92.688 101.286 1.00 41.50 O
ATOM 13 C1' A A 554 3.318 93.729 100.316 1.00 42.15 C
ATOM 14 N9 A A 554 2.241 94.642 100.692 1.00 41.29 N
ATOM 15 C8 A A 554 0.894 94.383 100.742 1.00 43.02 C
ATOM 16 N7 A A 554 0.173 95.404 101.136 1.00 43.08 N
ATOM 17 C5 A A 554 1.106 96.405 101.356 1.00 41.29 C
ATOM 18 C6 A A 554 0.980 97.739 101.784 1.00 40.49 C
ATOM 19 N6 A A 554 -0.186 98.316 102.077 1.00 38.40 N
ATOM 20 N1 A A 554 2.110 98.471 101.897 1.00 39.10 N
ATOM 21 C2 A A 554 3.279 97.895 101.596 1.00 40.24 C
ATOM 22 N3 A A 554 3.526 96.654 101.180 1.00 42.45 N
ATOM 23 C4 A A 554 2.384 95.951 101.081 1.00 41.92 C
ATOM 24 P U A 555 3.024 90.138 103.547 1.00 42.46 P
ATOM 25 OP1 U A 555 3.941 89.110 104.109 1.00 38.12 O
ATOM 26 OP2 U A 555 1.598 89.797 103.299 1.00 41.14 O
ATOM 27 O5' U A 555 3.071 91.445 104.461 1.00 37.45 O
TER

ATOM 1 O3' G B1052 3.971 103.100 102.778 1.00 42.55 O
ATOM 2 P G B1053 4.778 103.046 104.173 1.00 45.89 P
ATOM 3 OP1 G B1053 3.794 103.380 105.232 1.00 43.88 O
ATOM 4 OP2 G B1053 6.014 103.866 104.046 1.00 48.09 O
ATOM 5 O5' G B1053 5.243 101.522 104.327 1.00 43.26 O
ATOM 6 C5' G B1053 4.293 100.493 104.616 1.00 41.96 C
ATOM 7 C4' G B1053 4.930 99.113 104.558 1.00 42.28 C
ATOM 8 O4' G B1053 5.596 98.887 103.289 1.00 40.16 O
ATOM 9 C3' G B1053 5.997 98.704 105.563 1.00 39.83 C
ATOM 10 O3' G B1053 5.434 98.397 106.838 1.00 41.68 O
ATOM 11 C2' G B1053 6.487 97.416 104.917 1.00 40.05 C
ATOM 12 O2' G B1053 5.551 96.372 105.061 1.00 39.89 O
ATOM 13 C1' G B1053 6.496 97.800 103.438 1.00 40.93 C
ATOM 14 N9 G B1053 7.833 98.199 102.999 1.00 43.59 N
ATOM 15 C8 G B1053 8.291 99.468 102.723 1.00 42.48 C
ATOM 16 N7 G B1053 9.544 99.488 102.354 1.00 42.22 N
ATOM 17 C5 G B1053 9.937 98.157 102.384 1.00 42.22 C
ATOM 18 C6 G B1053 11.189 97.557 102.071 1.00 43.34 C
ATOM 19 O6 G B1053 12.228 98.100 101.671 1.00 45.22 O
ATOM 20 N1 G B1053 11.156 96.179 102.255 1.00 43.56 N
ATOM 21 C2 G B1053 10.060 95.464 102.671 1.00 43.97 C
ATOM 22 N2 G B1053 10.224 94.138 102.790 1.00 40.34 N
ATOM 23 N3 G B1053 8.884 96.009 102.951 1.00 43.64 N
ATOM 24 C4 G B1053 8.897 97.349 102.788 1.00 42.76 C
ATOM 25 P U B1054 6.357 98.398 108.163 1.00 41.94 P
ATOM 26 OP1 U B1054 5.464 98.032 109.292 1.00 42.71 O
ATOM 27 OP2 U B1054 7.117 99.670 108.232 1.00 41.95 O
ATOM 28 O5' U B1054 7.371 97.191 107.940 1.00 38.05 O
TER

Atoms:
OP1: (-1.059,89.421,99.299)
OP2: (-1.908,91.717,100.113)
C3': (3.031,91.701,101.466)
C1': (3.318,93.729,100.316)
C5': (1.729,90.616,99.564)
O4': (2.793,92.770,99.411)
C8: (0.894,94.383,100.742)
O2': (5.258,92.688,101.286)
C6: (0.980,97.739,101.784)
C5: (1.106,96.405,101.356)
C4: (2.384,95.951,101.081)
P: (-0.899,90.901,99.386)
C4': (2.920,91.439,99.977)
C2': (3.885,92.958,101.509)
C2: (3.279,97.895,101.596)
N1: (2.110,98.471,101.897)
N3: (3.526,96.654,101.180)
N6: (-0.186,98.316,102.077)
N7: (0.173,95.404,101.136)
N9: (2.241,94.642,100.692)
O5': (0.514,91.234,100.043)
O3': (3.628,90.615,102.142)
OP1: (3.794,103.380,105.232)
OP2: (6.014,103.866,104.046)
C3': (5.997,98.704,105.563)
C1': (6.496,97.800,103.438)
C5': (4.293,100.493,104.616)
O6: (12.228,98.100,101.671)
O4': (5.596,98.887,103.289)
C8: (8.291,99.468,102.723)
C2: (10.060,95.464,102.671)
C6: (11.189,97.557,102.071)
C5: (9.937,98.157,102.384)
C4: (8.897,97.349,102.788)
P: (4.778,103.046,104.173)
C4': (4.930,99.113,104.558)
C2': (6.487,97.416,104.917)
O2': (5.551,96.372,105.061)
N1: (11.156,96.179,102.255)
N2: (10.224,94.138,102.790)
N3: (8.884,96.009,102.951)
N7: (9.544,99.488,102.354)
N9: (7.833,98.199,102.999)
O5': (5.243,101.522,104.327)
O3': (5.434,98.397,106.838)
Image (generated by PyMOL):
PyMOL image
show in jmol