ClaRNA

Doublet info:

Details

Nucleotide types: AG
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 1YJN:0554:01053

Extra

PDB:
ATOM 1 O3' A A 553 -0.769 91.466 97.867 1.00 53.44 O
ATOM 2 P A A 554 -0.888 90.944 99.386 1.00 55.93 P
ATOM 3 OP1 A A 554 -1.068 89.462 99.325 1.00 54.95 O
ATOM 4 OP2 A A 554 -1.868 91.781 100.130 1.00 54.39 O
ATOM 5 O5' A A 554 0.539 91.244 100.028 1.00 53.74 O
ATOM 6 C5' A A 554 1.730 90.596 99.547 1.00 48.78 C
ATOM 7 C4' A A 554 2.939 91.399 99.939 1.00 45.48 C
ATOM 8 O4' A A 554 2.817 92.729 99.372 1.00 47.43 O
ATOM 9 C3' A A 554 3.059 91.667 101.423 1.00 44.67 C
ATOM 10 O3' A A 554 3.652 90.583 102.095 1.00 43.37 O
ATOM 11 C2' A A 554 3.927 92.911 101.450 1.00 45.57 C
ATOM 12 O2' A A 554 5.278 92.612 101.163 1.00 46.80 O
ATOM 13 C1' A A 554 3.340 93.691 100.278 1.00 45.43 C
ATOM 14 N9 A A 554 2.251 94.580 100.683 1.00 43.42 N
ATOM 15 C8 A A 554 0.917 94.283 100.764 1.00 42.99 C
ATOM 16 N7 A A 554 0.178 95.278 101.180 1.00 43.53 N
ATOM 17 C5 A A 554 1.085 96.307 101.382 1.00 44.18 C
ATOM 18 C6 A A 554 0.931 97.636 101.822 1.00 43.81 C
ATOM 19 N6 A A 554 -0.244 98.176 102.154 1.00 44.16 N
ATOM 20 N1 A A 554 2.039 98.401 101.909 1.00 42.93 N
ATOM 21 C2 A A 554 3.214 97.862 101.579 1.00 43.07 C
ATOM 22 N3 A A 554 3.488 96.630 101.154 1.00 45.22 N
ATOM 23 C4 A A 554 2.366 95.892 101.075 1.00 44.39 C
ATOM 24 P U A 555 3.076 90.137 103.519 1.00 43.43 P
ATOM 25 OP1 U A 555 4.000 89.111 104.063 1.00 41.18 O
ATOM 26 OP2 U A 555 1.645 89.806 103.322 1.00 44.15 O
ATOM 27 O5' U A 555 3.154 91.453 104.411 1.00 40.80 O
TER

ATOM 1 O3' G B1052 4.029 103.112 102.678 1.00 48.41 O
ATOM 2 P G B1053 4.830 103.039 104.074 1.00 49.18 P
ATOM 3 OP1 G B1053 3.870 103.395 105.144 1.00 47.65 O
ATOM 4 OP2 G B1053 6.071 103.844 103.918 1.00 51.45 O
ATOM 5 O5' G B1053 5.272 101.507 104.221 1.00 47.53 O
ATOM 6 C5' G B1053 4.310 100.482 104.505 1.00 45.45 C
ATOM 7 C4' G B1053 4.934 99.096 104.438 1.00 45.72 C
ATOM 8 O4' G B1053 5.616 98.894 103.171 1.00 44.61 O
ATOM 9 C3' G B1053 5.999 98.681 105.445 1.00 45.08 C
ATOM 10 O3' G B1053 5.454 98.353 106.725 1.00 47.37 O
ATOM 11 C2' G B1053 6.524 97.412 104.785 1.00 44.53 C
ATOM 12 O2' G B1053 5.622 96.336 104.920 1.00 42.01 O
ATOM 13 C1' G B1053 6.539 97.820 103.310 1.00 44.86 C
ATOM 14 N9 G B1053 7.871 98.244 102.871 1.00 46.41 N
ATOM 15 C8 G B1053 8.295 99.517 102.579 1.00 46.59 C
ATOM 16 N7 G B1053 9.551 99.569 102.220 1.00 46.32 N
ATOM 17 C5 G B1053 9.982 98.252 102.270 1.00 46.03 C
ATOM 18 C6 G B1053 11.256 97.687 101.982 1.00 47.68 C
ATOM 19 O6 G B1053 12.284 98.256 101.583 1.00 49.44 O
ATOM 20 N1 G B1053 11.264 96.312 102.194 1.00 46.49 N
ATOM 21 C2 G B1053 10.188 95.574 102.611 1.00 46.25 C
ATOM 22 N2 G B1053 10.391 94.264 102.765 1.00 43.88 N
ATOM 23 N3 G B1053 8.994 96.084 102.862 1.00 47.10 N
ATOM 24 C4 G B1053 8.963 97.420 102.675 1.00 46.23 C
ATOM 25 P U B1054 6.370 98.465 108.050 1.00 47.70 P
ATOM 26 OP1 U B1054 5.493 98.190 109.214 1.00 47.45 O
ATOM 27 OP2 U B1054 7.121 99.738 107.998 1.00 48.42 O
ATOM 28 O5' U B1054 7.405 97.264 107.921 1.00 44.21 O
TER

Atoms:
OP1: (-1.068,89.462,99.325)
OP2: (-1.868,91.781,100.130)
C3': (3.059,91.667,101.423)
C1': (3.340,93.691,100.278)
C5': (1.730,90.596,99.547)
O4': (2.817,92.729,99.372)
C8: (0.917,94.283,100.764)
O2': (5.278,92.612,101.163)
C6: (0.931,97.636,101.822)
C5: (1.085,96.307,101.382)
C4: (2.366,95.892,101.075)
P: (-0.888,90.944,99.386)
C4': (2.939,91.399,99.939)
C2': (3.927,92.911,101.450)
C2: (3.214,97.862,101.579)
N1: (2.039,98.401,101.909)
N3: (3.488,96.630,101.154)
N6: (-0.244,98.176,102.154)
N7: (0.178,95.278,101.180)
N9: (2.251,94.580,100.683)
O5': (0.539,91.244,100.028)
O3': (3.652,90.583,102.095)
OP1: (3.870,103.395,105.144)
OP2: (6.071,103.844,103.918)
C3': (5.999,98.681,105.445)
C1': (6.539,97.820,103.310)
C5': (4.310,100.482,104.505)
O6: (12.284,98.256,101.583)
O4': (5.616,98.894,103.171)
C8: (8.295,99.517,102.579)
C2: (10.188,95.574,102.611)
C6: (11.256,97.687,101.982)
C5: (9.982,98.252,102.270)
C4: (8.963,97.420,102.675)
P: (4.830,103.039,104.074)
C4': (4.934,99.096,104.438)
C2': (6.524,97.412,104.785)
O2': (5.622,96.336,104.920)
N1: (11.264,96.312,102.194)
N2: (10.391,94.264,102.765)
N3: (8.994,96.084,102.862)
N7: (9.551,99.569,102.220)
N9: (7.871,98.244,102.871)
O5': (5.272,101.507,104.221)
O3': (5.454,98.353,106.725)
Image (generated by PyMOL):
PyMOL image
show in jmol