ClaRNA

Doublet info:

Details

Nucleotide types: AG
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 1YJ9:0554:01053

Extra

PDB:
ATOM 1 O3' A A 553 -0.631 91.525 98.176 1.00 62.09 O
ATOM 2 P A A 554 -0.681 90.985 99.690 1.00 62.94 P
ATOM 3 OP1 A A 554 -0.742 89.494 99.610 1.00 60.35 O
ATOM 4 OP2 A A 554 -1.737 91.732 100.432 1.00 62.02 O
ATOM 5 O5' A A 554 0.728 91.415 100.306 1.00 61.60 O
ATOM 6 C5' A A 554 1.961 90.857 99.805 1.00 57.41 C
ATOM 7 C4' A A 554 3.131 91.686 100.262 1.00 54.42 C
ATOM 8 O4' A A 554 3.000 93.035 99.744 1.00 55.26 O
ATOM 9 C3' A A 554 3.221 91.886 101.758 1.00 53.68 C
ATOM 10 O3' A A 554 3.819 90.768 102.390 1.00 52.16 O
ATOM 11 C2' A A 554 4.058 93.153 101.857 1.00 53.36 C
ATOM 12 O2' A A 554 5.427 92.916 101.614 1.00 52.91 O
ATOM 13 C1' A A 554 3.497 93.968 100.691 1.00 53.25 C
ATOM 14 N9 A A 554 2.396 94.847 101.082 1.00 52.57 N
ATOM 15 C8 A A 554 1.069 94.519 101.149 1.00 53.92 C
ATOM 16 N7 A A 554 0.300 95.503 101.546 1.00 54.96 N
ATOM 17 C5 A A 554 1.180 96.554 101.752 1.00 54.12 C
ATOM 18 C6 A A 554 0.986 97.883 102.183 1.00 54.13 C
ATOM 19 N6 A A 554 -0.208 98.395 102.486 1.00 51.70 N
ATOM 20 N1 A A 554 2.075 98.677 102.290 1.00 54.12 N
ATOM 21 C2 A A 554 3.269 98.164 101.976 1.00 54.03 C
ATOM 22 N3 A A 554 3.577 96.934 101.553 1.00 55.71 N
ATOM 23 C4 A A 554 2.476 96.167 101.464 1.00 53.73 C
ATOM 24 P U A 555 3.220 90.233 103.779 1.00 52.64 P
ATOM 25 OP1 U A 555 4.164 89.225 104.313 1.00 51.77 O
ATOM 26 OP2 U A 555 1.801 89.855 103.542 1.00 52.14 O
ATOM 27 O5' U A 555 3.262 91.505 104.740 1.00 49.20 O
TER

ATOM 1 O3' G B1052 4.089 103.284 102.996 1.00 52.23 O
ATOM 2 P G B1053 4.894 103.235 104.388 1.00 54.25 P
ATOM 3 OP1 G B1053 3.936 103.528 105.478 1.00 53.99 O
ATOM 4 OP2 G B1053 6.096 104.092 104.232 1.00 56.83 O
ATOM 5 O5' G B1053 5.391 101.719 104.512 1.00 52.40 O
ATOM 6 C5' G B1053 4.479 100.678 104.882 1.00 50.68 C
ATOM 7 C4' G B1053 5.131 99.307 104.809 1.00 51.59 C
ATOM 8 O4' G B1053 5.827 99.130 103.548 1.00 50.35 O
ATOM 9 C3' G B1053 6.200 98.894 105.814 1.00 50.01 C
ATOM 10 O3' G B1053 5.641 98.581 107.097 1.00 50.98 O
ATOM 11 C2' G B1053 6.709 97.621 105.147 1.00 50.39 C
ATOM 12 O2' G B1053 5.780 96.566 105.258 1.00 48.66 O
ATOM 13 C1' G B1053 6.718 98.029 103.672 1.00 51.08 C
ATOM 14 N9 G B1053 8.051 98.416 103.204 1.00 54.06 N
ATOM 15 C8 G B1053 8.497 99.678 102.884 1.00 54.47 C
ATOM 16 N7 G B1053 9.743 99.696 102.490 1.00 54.03 N
ATOM 17 C5 G B1053 10.147 98.369 102.550 1.00 52.97 C
ATOM 18 C6 G B1053 11.395 97.772 102.236 1.00 54.15 C
ATOM 19 O6 G B1053 12.425 98.313 101.803 1.00 55.24 O
ATOM 20 N1 G B1053 11.375 96.399 102.462 1.00 53.46 N
ATOM 21 C2 G B1053 10.296 95.690 102.916 1.00 52.07 C
ATOM 22 N2 G B1053 10.474 94.377 103.071 1.00 48.57 N
ATOM 23 N3 G B1053 9.125 96.230 103.199 1.00 53.42 N
ATOM 24 C4 G B1053 9.121 97.566 102.996 1.00 53.28 C
ATOM 25 P U B1054 6.559 98.647 108.429 1.00 50.94 P
ATOM 26 OP1 U B1054 5.699 98.318 109.598 1.00 50.16 O
ATOM 27 OP2 U B1054 7.327 99.918 108.435 1.00 50.00 O
ATOM 28 O5' U B1054 7.564 97.430 108.254 1.00 47.65 O
TER

Atoms:
OP1: (-0.742,89.494,99.610)
OP2: (-1.737,91.732,100.432)
C3': (3.221,91.886,101.758)
C1': (3.497,93.968,100.691)
C5': (1.961,90.857,99.805)
O4': (3.000,93.035,99.744)
C8: (1.069,94.519,101.149)
O2': (5.427,92.916,101.614)
C6: (0.986,97.883,102.183)
C5: (1.180,96.554,101.752)
C4: (2.476,96.167,101.464)
P: (-0.681,90.985,99.690)
C4': (3.131,91.686,100.262)
C2': (4.058,93.153,101.857)
C2: (3.269,98.164,101.976)
N1: (2.075,98.677,102.290)
N3: (3.577,96.934,101.553)
N6: (-0.208,98.395,102.486)
N7: (0.300,95.503,101.546)
N9: (2.396,94.847,101.082)
O5': (0.728,91.415,100.306)
O3': (3.819,90.768,102.390)
OP1: (3.936,103.528,105.478)
OP2: (6.096,104.092,104.232)
C3': (6.200,98.894,105.814)
C1': (6.718,98.029,103.672)
C5': (4.479,100.678,104.882)
O6: (12.425,98.313,101.803)
O4': (5.827,99.130,103.548)
C8: (8.497,99.678,102.884)
C2: (10.296,95.690,102.916)
C6: (11.395,97.772,102.236)
C5: (10.147,98.369,102.550)
C4: (9.121,97.566,102.996)
P: (4.894,103.235,104.388)
C4': (5.131,99.307,104.809)
C2': (6.709,97.621,105.147)
O2': (5.780,96.566,105.258)
N1: (11.375,96.399,102.462)
N2: (10.474,94.377,103.071)
N3: (9.125,96.230,103.199)
N7: (9.743,99.696,102.490)
N9: (8.051,98.416,103.204)
O5': (5.391,101.719,104.512)
O3': (5.641,98.581,107.097)
Image (generated by PyMOL):
PyMOL image
show in jmol