Doublet info:
Details
Nucleotide types:
CC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1DDY:E12:E10
Extra
PDB:
ATOM 1 O3' G A 11 -9.375 -13.007 22.137 1.00 21.17 O
ATOM 2 P C A 12 -8.402 -13.503 20.972 1.00 19.61 P
ATOM 3 OP1 C A 12 -7.378 -12.470 20.696 1.00 21.33 O
ATOM 4 OP2 C A 12 -9.341 -13.906 19.899 1.00 24.26 O
ATOM 5 O5' C A 12 -7.704 -14.788 21.595 1.00 16.92 O
ATOM 6 C5' C A 12 -6.314 -14.824 21.843 1.00 15.52 C
ATOM 7 C4' C A 12 -5.892 -16.243 22.086 1.00 18.31 C
ATOM 8 O4' C A 12 -6.571 -16.746 23.272 1.00 19.94 O
ATOM 9 C3' C A 12 -6.286 -17.208 20.980 1.00 20.81 C
ATOM 10 O3' C A 12 -5.335 -17.150 19.921 1.00 22.20 O
ATOM 11 C2' C A 12 -6.386 -18.547 21.718 1.00 21.14 C
ATOM 12 O2' C A 12 -5.171 -19.244 21.902 1.00 22.72 O
ATOM 13 C1' C A 12 -6.927 -18.106 23.085 1.00 18.50 C
ATOM 14 N1 C A 12 -8.388 -18.208 23.193 1.00 17.00 N
ATOM 15 C2 C A 12 -8.933 -19.324 23.821 1.00 17.97 C
ATOM 16 O2 C A 12 -8.171 -20.197 24.249 1.00 18.04 O
ATOM 17 N3 C A 12 -10.274 -19.429 23.937 1.00 16.52 N
ATOM 18 C4 C A 12 -11.060 -18.476 23.435 1.00 14.23 C
ATOM 19 N4 C A 12 -12.371 -18.628 23.562 1.00 15.08 N
ATOM 20 C5 C A 12 -10.531 -17.327 22.780 1.00 12.98 C
ATOM 21 C6 C A 12 -9.202 -17.231 22.687 1.00 14.01 C
ATOM 22 P A A 13 -5.775 -17.525 18.422 1.00 25.66 P
ATOM 23 OP1 A A 13 -6.003 -18.995 18.453 1.00 23.77 O
ATOM 24 OP2 A A 13 -4.836 -16.926 17.422 1.00 20.25 O
ATOM 25 O5' A A 13 -7.172 -16.812 18.197 1.00 21.22 O
TER
ATOM 1 O3' G B 9 -17.952 -10.935 20.744 1.00 15.10 O
ATOM 2 P C B 10 -16.659 -10.480 19.931 1.00 18.60 P
ATOM 3 OP1 C B 10 -15.706 -9.870 20.899 1.00 22.53 O
ATOM 4 OP2 C B 10 -17.150 -9.688 18.767 1.00 16.53 O
ATOM 5 O5' C B 10 -15.990 -11.836 19.437 1.00 16.87 O
ATOM 6 C5' C B 10 -14.738 -12.247 19.970 1.00 16.29 C
ATOM 7 C4' C B 10 -14.921 -13.475 20.823 1.00 16.02 C
ATOM 8 O4' C B 10 -15.281 -14.607 20.031 1.00 15.77 O
ATOM 9 C3' C B 10 -13.700 -13.924 21.616 1.00 16.17 C
ATOM 10 O3' C B 10 -13.869 -13.505 22.962 1.00 19.26 O
ATOM 11 C2' C B 10 -13.703 -15.455 21.459 1.00 15.58 C
ATOM 12 O2' C B 10 -13.607 -16.120 22.698 1.00 16.15 O
ATOM 13 C1' C B 10 -15.050 -15.746 20.806 1.00 15.85 C
ATOM 14 N1 C B 10 -15.011 -16.885 19.885 1.00 17.69 N
ATOM 15 C2 C B 10 -15.523 -18.119 20.292 1.00 19.71 C
ATOM 16 O2 C B 10 -15.947 -18.241 21.443 1.00 22.34 O
ATOM 17 N3 C B 10 -15.545 -19.141 19.421 1.00 20.13 N
ATOM 18 C4 C B 10 -15.080 -18.965 18.184 1.00 20.90 C
ATOM 19 N4 C B 10 -15.141 -19.992 17.338 1.00 22.54 N
ATOM 20 C5 C B 10 -14.532 -17.727 17.753 1.00 20.85 C
ATOM 21 C6 C B 10 -14.506 -16.729 18.631 1.00 18.47 C
ATOM 22 P G B 11 -13.306 -12.074 23.428 1.00 19.32 P
ATOM 23 OP1 G B 11 -13.792 -11.942 24.826 1.00 23.46 O
ATOM 24 OP2 G B 11 -13.648 -11.040 22.415 1.00 20.00 O
ATOM 25 O5' G B 11 -11.725 -12.239 23.443 1.00 15.48 O
TER
ATOM 2 P C A 12 -8.402 -13.503 20.972 1.00 19.61 P
ATOM 3 OP1 C A 12 -7.378 -12.470 20.696 1.00 21.33 O
ATOM 4 OP2 C A 12 -9.341 -13.906 19.899 1.00 24.26 O
ATOM 5 O5' C A 12 -7.704 -14.788 21.595 1.00 16.92 O
ATOM 6 C5' C A 12 -6.314 -14.824 21.843 1.00 15.52 C
ATOM 7 C4' C A 12 -5.892 -16.243 22.086 1.00 18.31 C
ATOM 8 O4' C A 12 -6.571 -16.746 23.272 1.00 19.94 O
ATOM 9 C3' C A 12 -6.286 -17.208 20.980 1.00 20.81 C
ATOM 10 O3' C A 12 -5.335 -17.150 19.921 1.00 22.20 O
ATOM 11 C2' C A 12 -6.386 -18.547 21.718 1.00 21.14 C
ATOM 12 O2' C A 12 -5.171 -19.244 21.902 1.00 22.72 O
ATOM 13 C1' C A 12 -6.927 -18.106 23.085 1.00 18.50 C
ATOM 14 N1 C A 12 -8.388 -18.208 23.193 1.00 17.00 N
ATOM 15 C2 C A 12 -8.933 -19.324 23.821 1.00 17.97 C
ATOM 16 O2 C A 12 -8.171 -20.197 24.249 1.00 18.04 O
ATOM 17 N3 C A 12 -10.274 -19.429 23.937 1.00 16.52 N
ATOM 18 C4 C A 12 -11.060 -18.476 23.435 1.00 14.23 C
ATOM 19 N4 C A 12 -12.371 -18.628 23.562 1.00 15.08 N
ATOM 20 C5 C A 12 -10.531 -17.327 22.780 1.00 12.98 C
ATOM 21 C6 C A 12 -9.202 -17.231 22.687 1.00 14.01 C
ATOM 22 P A A 13 -5.775 -17.525 18.422 1.00 25.66 P
ATOM 23 OP1 A A 13 -6.003 -18.995 18.453 1.00 23.77 O
ATOM 24 OP2 A A 13 -4.836 -16.926 17.422 1.00 20.25 O
ATOM 25 O5' A A 13 -7.172 -16.812 18.197 1.00 21.22 O
TER
ATOM 1 O3' G B 9 -17.952 -10.935 20.744 1.00 15.10 O
ATOM 2 P C B 10 -16.659 -10.480 19.931 1.00 18.60 P
ATOM 3 OP1 C B 10 -15.706 -9.870 20.899 1.00 22.53 O
ATOM 4 OP2 C B 10 -17.150 -9.688 18.767 1.00 16.53 O
ATOM 5 O5' C B 10 -15.990 -11.836 19.437 1.00 16.87 O
ATOM 6 C5' C B 10 -14.738 -12.247 19.970 1.00 16.29 C
ATOM 7 C4' C B 10 -14.921 -13.475 20.823 1.00 16.02 C
ATOM 8 O4' C B 10 -15.281 -14.607 20.031 1.00 15.77 O
ATOM 9 C3' C B 10 -13.700 -13.924 21.616 1.00 16.17 C
ATOM 10 O3' C B 10 -13.869 -13.505 22.962 1.00 19.26 O
ATOM 11 C2' C B 10 -13.703 -15.455 21.459 1.00 15.58 C
ATOM 12 O2' C B 10 -13.607 -16.120 22.698 1.00 16.15 O
ATOM 13 C1' C B 10 -15.050 -15.746 20.806 1.00 15.85 C
ATOM 14 N1 C B 10 -15.011 -16.885 19.885 1.00 17.69 N
ATOM 15 C2 C B 10 -15.523 -18.119 20.292 1.00 19.71 C
ATOM 16 O2 C B 10 -15.947 -18.241 21.443 1.00 22.34 O
ATOM 17 N3 C B 10 -15.545 -19.141 19.421 1.00 20.13 N
ATOM 18 C4 C B 10 -15.080 -18.965 18.184 1.00 20.90 C
ATOM 19 N4 C B 10 -15.141 -19.992 17.338 1.00 22.54 N
ATOM 20 C5 C B 10 -14.532 -17.727 17.753 1.00 20.85 C
ATOM 21 C6 C B 10 -14.506 -16.729 18.631 1.00 18.47 C
ATOM 22 P G B 11 -13.306 -12.074 23.428 1.00 19.32 P
ATOM 23 OP1 G B 11 -13.792 -11.942 24.826 1.00 23.46 O
ATOM 24 OP2 G B 11 -13.648 -11.040 22.415 1.00 20.00 O
ATOM 25 O5' G B 11 -11.725 -12.239 23.443 1.00 15.48 O
TER
Atoms:
C2: (-8.933,-19.324,23.821)
OP1: (-7.378,-12.470,20.696)
OP2: (-9.341,-13.906,19.899)
C4: (-11.060,-18.476,23.435)
O5': (-7.704,-14.788,21.595)
C3': (-6.286,-17.208,20.980)
C1': (-6.927,-18.106,23.085)
O4': (-6.571,-16.746,23.272)
C5': (-6.314,-14.824,21.843)
P: (-8.402,-13.503,20.972)
O2: (-8.171,-20.197,24.249)
C4': (-5.892,-16.243,22.086)
C2': (-6.386,-18.547,21.718)
O2': (-5.171,-19.244,21.902)
N1: (-8.388,-18.208,23.193)
N3: (-10.274,-19.429,23.937)
N4: (-12.371,-18.628,23.562)
C6: (-9.202,-17.231,22.687)
C5: (-10.531,-17.327,22.780)
O3': (-5.335,-17.150,19.921)
OP1: (-7.378,-12.470,20.696)
OP2: (-9.341,-13.906,19.899)
C4: (-11.060,-18.476,23.435)
O5': (-7.704,-14.788,21.595)
C3': (-6.286,-17.208,20.980)
C1': (-6.927,-18.106,23.085)
O4': (-6.571,-16.746,23.272)
C5': (-6.314,-14.824,21.843)
P: (-8.402,-13.503,20.972)
O2: (-8.171,-20.197,24.249)
C4': (-5.892,-16.243,22.086)
C2': (-6.386,-18.547,21.718)
O2': (-5.171,-19.244,21.902)
N1: (-8.388,-18.208,23.193)
N3: (-10.274,-19.429,23.937)
N4: (-12.371,-18.628,23.562)
C6: (-9.202,-17.231,22.687)
C5: (-10.531,-17.327,22.780)
O3': (-5.335,-17.150,19.921)
C2: (-15.523,-18.119,20.292)
OP1: (-15.706,-9.870,20.899)
OP2: (-17.150,-9.688,18.767)
C4: (-15.080,-18.965,18.184)
O5': (-15.990,-11.836,19.437)
C3': (-13.700,-13.924,21.616)
C1': (-15.050,-15.746,20.806)
O4': (-15.281,-14.607,20.031)
C5': (-14.738,-12.247,19.970)
P: (-16.659,-10.480,19.931)
O2: (-15.947,-18.241,21.443)
C4': (-14.921,-13.475,20.823)
C2': (-13.703,-15.455,21.459)
O2': (-13.607,-16.120,22.698)
N1: (-15.011,-16.885,19.885)
N3: (-15.545,-19.141,19.421)
N4: (-15.141,-19.992,17.338)
C6: (-14.506,-16.729,18.631)
C5: (-14.532,-17.727,17.753)
O3': (-13.869,-13.505,22.962)
OP1: (-15.706,-9.870,20.899)
OP2: (-17.150,-9.688,18.767)
C4: (-15.080,-18.965,18.184)
O5': (-15.990,-11.836,19.437)
C3': (-13.700,-13.924,21.616)
C1': (-15.050,-15.746,20.806)
O4': (-15.281,-14.607,20.031)
C5': (-14.738,-12.247,19.970)
P: (-16.659,-10.480,19.931)
O2: (-15.947,-18.241,21.443)
C4': (-14.921,-13.475,20.823)
C2': (-13.703,-15.455,21.459)
O2': (-13.607,-16.120,22.698)
N1: (-15.011,-16.885,19.885)
N3: (-15.545,-19.141,19.421)
N4: (-15.141,-19.992,17.338)
C6: (-14.506,-16.729,18.631)
C5: (-14.532,-17.727,17.753)
O3': (-13.869,-13.505,22.962)
Image (generated by PyMOL):