Doublet info:
Details
Nucleotide types:
AG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3SD1:A7:A43
Extra
PDB:
ATOM 1 O3' U A 6 -6.825 -23.178 21.162 1.00 27.68 O
ATOM 2 P A A 7 -6.861 -21.664 20.617 1.00 26.03 P
ATOM 3 OP1 A A 7 -8.287 -21.294 20.460 1.00 27.72 O
ATOM 4 OP2 A A 7 -5.973 -21.600 19.429 1.00 27.27 O
ATOM 5 O5' A A 7 -6.213 -20.837 21.812 1.00 25.45 O
ATOM 6 C5' A A 7 -6.829 -20.796 23.090 1.00 26.81 C
ATOM 7 C4' A A 7 -6.086 -19.879 24.026 1.00 28.01 C
ATOM 8 O4' A A 7 -4.742 -20.382 24.243 1.00 28.11 O
ATOM 9 C3' A A 7 -5.873 -18.459 23.532 1.00 24.40 C
ATOM 10 O3' A A 7 -7.013 -17.638 23.719 1.00 27.56 O
ATOM 11 C2' A A 7 -4.654 -18.007 24.325 1.00 26.90 C
ATOM 12 O2' A A 7 -5.024 -17.617 25.639 1.00 27.72 O
ATOM 13 C1' A A 7 -3.848 -19.305 24.416 1.00 27.95 C
ATOM 14 N9 A A 7 -2.808 -19.389 23.375 1.00 26.93 N
ATOM 15 C8 A A 7 -2.908 -19.981 22.142 1.00 29.06 C
ATOM 16 N7 A A 7 -1.812 -19.897 21.429 1.00 30.80 N
ATOM 17 C5 A A 7 -0.930 -19.210 22.250 1.00 26.04 C
ATOM 18 C6 A A 7 0.400 -18.802 22.068 1.00 28.55 C
ATOM 19 N6 A A 7 1.097 -19.046 20.953 1.00 28.95 N
ATOM 20 N1 A A 7 0.994 -18.129 23.080 1.00 30.08 N
ATOM 21 C2 A A 7 0.287 -17.892 24.194 1.00 29.06 C
ATOM 22 N3 A A 7 -0.970 -18.226 24.478 1.00 27.07 N
ATOM 23 C4 A A 7 -1.528 -18.891 23.453 1.00 25.27 C
ATOM 24 P G A 8 -7.347 -16.469 22.670 1.00 26.97 P
ATOM 25 OP1 G A 8 -8.644 -15.876 23.072 1.00 41.98 O
ATOM 26 OP2 G A 8 -7.220 -17.046 21.317 1.00 24.37 O
ATOM 27 O5' G A 8 -6.175 -15.427 22.925 1.00 25.38 O
TER
ATOM 1 O3' C B 42 5.937 -12.864 30.919 1.00 50.30 O
ATOM 2 P G B 43 4.691 -11.947 30.478 1.00 46.91 P
ATOM 3 OP1 G B 43 5.246 -10.663 29.981 1.00 40.59 O
ATOM 4 OP2 G B 43 3.740 -11.919 31.617 1.00 44.33 O
ATOM 5 O5' G B 43 4.063 -12.769 29.270 1.00 34.59 O
ATOM 6 C5' G B 43 4.784 -12.946 28.061 1.00 34.42 C
ATOM 7 C4' G B 43 4.023 -13.806 27.089 1.00 34.52 C
ATOM 8 O4' G B 43 3.912 -15.159 27.612 1.00 32.25 O
ATOM 9 C3' G B 43 2.583 -13.396 26.828 1.00 30.37 C
ATOM 10 O3' G B 43 2.466 -12.345 25.890 1.00 31.61 O
ATOM 11 C2' G B 43 1.952 -14.698 26.372 1.00 28.05 C
ATOM 12 O2' G B 43 2.339 -15.001 25.040 1.00 32.93 O
ATOM 13 C1' G B 43 2.639 -15.687 27.307 1.00 30.88 C
ATOM 14 N9 G B 43 1.892 -15.847 28.568 1.00 29.25 N
ATOM 15 C8 G B 43 2.280 -15.456 29.827 1.00 30.23 C
ATOM 16 N7 G B 43 1.387 -15.726 30.740 1.00 31.62 N
ATOM 17 C5 G B 43 0.346 -16.325 30.039 1.00 32.14 C
ATOM 18 C6 G B 43 -0.900 -16.837 30.487 1.00 28.20 C
ATOM 19 O6 G B 43 -1.354 -16.866 31.635 1.00 27.08 O
ATOM 20 N1 G B 43 -1.650 -17.354 29.437 1.00 28.32 N
ATOM 21 C2 G B 43 -1.257 -17.380 28.121 1.00 27.70 C
ATOM 22 N2 G B 43 -2.120 -17.922 27.249 1.00 27.41 N
ATOM 23 N3 G B 43 -0.102 -16.908 27.692 1.00 28.13 N
ATOM 24 C4 G B 43 0.643 -16.402 28.696 1.00 28.70 C
ATOM 25 P U B 44 1.364 -11.195 26.102 1.00 34.59 P
ATOM 26 OP1 U B 44 1.464 -10.278 24.940 1.00 37.78 O
ATOM 27 OP2 U B 44 1.561 -10.643 27.464 1.00 29.83 O
ATOM 28 O5' U B 44 -0.008 -12.002 26.040 1.00 28.03 O
TER
ATOM 2 P A A 7 -6.861 -21.664 20.617 1.00 26.03 P
ATOM 3 OP1 A A 7 -8.287 -21.294 20.460 1.00 27.72 O
ATOM 4 OP2 A A 7 -5.973 -21.600 19.429 1.00 27.27 O
ATOM 5 O5' A A 7 -6.213 -20.837 21.812 1.00 25.45 O
ATOM 6 C5' A A 7 -6.829 -20.796 23.090 1.00 26.81 C
ATOM 7 C4' A A 7 -6.086 -19.879 24.026 1.00 28.01 C
ATOM 8 O4' A A 7 -4.742 -20.382 24.243 1.00 28.11 O
ATOM 9 C3' A A 7 -5.873 -18.459 23.532 1.00 24.40 C
ATOM 10 O3' A A 7 -7.013 -17.638 23.719 1.00 27.56 O
ATOM 11 C2' A A 7 -4.654 -18.007 24.325 1.00 26.90 C
ATOM 12 O2' A A 7 -5.024 -17.617 25.639 1.00 27.72 O
ATOM 13 C1' A A 7 -3.848 -19.305 24.416 1.00 27.95 C
ATOM 14 N9 A A 7 -2.808 -19.389 23.375 1.00 26.93 N
ATOM 15 C8 A A 7 -2.908 -19.981 22.142 1.00 29.06 C
ATOM 16 N7 A A 7 -1.812 -19.897 21.429 1.00 30.80 N
ATOM 17 C5 A A 7 -0.930 -19.210 22.250 1.00 26.04 C
ATOM 18 C6 A A 7 0.400 -18.802 22.068 1.00 28.55 C
ATOM 19 N6 A A 7 1.097 -19.046 20.953 1.00 28.95 N
ATOM 20 N1 A A 7 0.994 -18.129 23.080 1.00 30.08 N
ATOM 21 C2 A A 7 0.287 -17.892 24.194 1.00 29.06 C
ATOM 22 N3 A A 7 -0.970 -18.226 24.478 1.00 27.07 N
ATOM 23 C4 A A 7 -1.528 -18.891 23.453 1.00 25.27 C
ATOM 24 P G A 8 -7.347 -16.469 22.670 1.00 26.97 P
ATOM 25 OP1 G A 8 -8.644 -15.876 23.072 1.00 41.98 O
ATOM 26 OP2 G A 8 -7.220 -17.046 21.317 1.00 24.37 O
ATOM 27 O5' G A 8 -6.175 -15.427 22.925 1.00 25.38 O
TER
ATOM 1 O3' C B 42 5.937 -12.864 30.919 1.00 50.30 O
ATOM 2 P G B 43 4.691 -11.947 30.478 1.00 46.91 P
ATOM 3 OP1 G B 43 5.246 -10.663 29.981 1.00 40.59 O
ATOM 4 OP2 G B 43 3.740 -11.919 31.617 1.00 44.33 O
ATOM 5 O5' G B 43 4.063 -12.769 29.270 1.00 34.59 O
ATOM 6 C5' G B 43 4.784 -12.946 28.061 1.00 34.42 C
ATOM 7 C4' G B 43 4.023 -13.806 27.089 1.00 34.52 C
ATOM 8 O4' G B 43 3.912 -15.159 27.612 1.00 32.25 O
ATOM 9 C3' G B 43 2.583 -13.396 26.828 1.00 30.37 C
ATOM 10 O3' G B 43 2.466 -12.345 25.890 1.00 31.61 O
ATOM 11 C2' G B 43 1.952 -14.698 26.372 1.00 28.05 C
ATOM 12 O2' G B 43 2.339 -15.001 25.040 1.00 32.93 O
ATOM 13 C1' G B 43 2.639 -15.687 27.307 1.00 30.88 C
ATOM 14 N9 G B 43 1.892 -15.847 28.568 1.00 29.25 N
ATOM 15 C8 G B 43 2.280 -15.456 29.827 1.00 30.23 C
ATOM 16 N7 G B 43 1.387 -15.726 30.740 1.00 31.62 N
ATOM 17 C5 G B 43 0.346 -16.325 30.039 1.00 32.14 C
ATOM 18 C6 G B 43 -0.900 -16.837 30.487 1.00 28.20 C
ATOM 19 O6 G B 43 -1.354 -16.866 31.635 1.00 27.08 O
ATOM 20 N1 G B 43 -1.650 -17.354 29.437 1.00 28.32 N
ATOM 21 C2 G B 43 -1.257 -17.380 28.121 1.00 27.70 C
ATOM 22 N2 G B 43 -2.120 -17.922 27.249 1.00 27.41 N
ATOM 23 N3 G B 43 -0.102 -16.908 27.692 1.00 28.13 N
ATOM 24 C4 G B 43 0.643 -16.402 28.696 1.00 28.70 C
ATOM 25 P U B 44 1.364 -11.195 26.102 1.00 34.59 P
ATOM 26 OP1 U B 44 1.464 -10.278 24.940 1.00 37.78 O
ATOM 27 OP2 U B 44 1.561 -10.643 27.464 1.00 29.83 O
ATOM 28 O5' U B 44 -0.008 -12.002 26.040 1.00 28.03 O
TER
Atoms:
OP1: (-8.287,-21.294,20.460)
OP2: (-5.973,-21.600,19.429)
C3': (-5.873,-18.459,23.532)
C1': (-3.848,-19.305,24.416)
C5': (-6.829,-20.796,23.090)
O4': (-4.742,-20.382,24.243)
C8: (-2.908,-19.981,22.142)
O2': (-5.024,-17.617,25.639)
C6: (0.400,-18.802,22.068)
C5: (-0.930,-19.210,22.250)
C4: (-1.528,-18.891,23.453)
P: (-6.861,-21.664,20.617)
C4': (-6.086,-19.879,24.026)
C2': (-4.654,-18.007,24.325)
C2: (0.287,-17.892,24.194)
N1: (0.994,-18.129,23.080)
N3: (-0.970,-18.226,24.478)
N6: (1.097,-19.046,20.953)
N7: (-1.812,-19.897,21.429)
N9: (-2.808,-19.389,23.375)
O5': (-6.213,-20.837,21.812)
O3': (-7.013,-17.638,23.719)
OP2: (-5.973,-21.600,19.429)
C3': (-5.873,-18.459,23.532)
C1': (-3.848,-19.305,24.416)
C5': (-6.829,-20.796,23.090)
O4': (-4.742,-20.382,24.243)
C8: (-2.908,-19.981,22.142)
O2': (-5.024,-17.617,25.639)
C6: (0.400,-18.802,22.068)
C5: (-0.930,-19.210,22.250)
C4: (-1.528,-18.891,23.453)
P: (-6.861,-21.664,20.617)
C4': (-6.086,-19.879,24.026)
C2': (-4.654,-18.007,24.325)
C2: (0.287,-17.892,24.194)
N1: (0.994,-18.129,23.080)
N3: (-0.970,-18.226,24.478)
N6: (1.097,-19.046,20.953)
N7: (-1.812,-19.897,21.429)
N9: (-2.808,-19.389,23.375)
O5': (-6.213,-20.837,21.812)
O3': (-7.013,-17.638,23.719)
OP1: (5.246,-10.663,29.981)
OP2: (3.740,-11.919,31.617)
C3': (2.583,-13.396,26.828)
C1': (2.639,-15.687,27.307)
C5': (4.784,-12.946,28.061)
O6: (-1.354,-16.866,31.635)
O4': (3.912,-15.159,27.612)
C8: (2.280,-15.456,29.827)
C2: (-1.257,-17.380,28.121)
C6: (-0.900,-16.837,30.487)
C5: (0.346,-16.325,30.039)
C4: (0.643,-16.402,28.696)
P: (4.691,-11.947,30.478)
C4': (4.023,-13.806,27.089)
C2': (1.952,-14.698,26.372)
O2': (2.339,-15.001,25.040)
N1: (-1.650,-17.354,29.437)
N2: (-2.120,-17.922,27.249)
N3: (-0.102,-16.908,27.692)
N7: (1.387,-15.726,30.740)
N9: (1.892,-15.847,28.568)
O5': (4.063,-12.769,29.270)
O3': (2.466,-12.345,25.890)
OP2: (3.740,-11.919,31.617)
C3': (2.583,-13.396,26.828)
C1': (2.639,-15.687,27.307)
C5': (4.784,-12.946,28.061)
O6: (-1.354,-16.866,31.635)
O4': (3.912,-15.159,27.612)
C8: (2.280,-15.456,29.827)
C2: (-1.257,-17.380,28.121)
C6: (-0.900,-16.837,30.487)
C5: (0.346,-16.325,30.039)
C4: (0.643,-16.402,28.696)
P: (4.691,-11.947,30.478)
C4': (4.023,-13.806,27.089)
C2': (1.952,-14.698,26.372)
O2': (2.339,-15.001,25.040)
N1: (-1.650,-17.354,29.437)
N2: (-2.120,-17.922,27.249)
N3: (-0.102,-16.908,27.692)
N7: (1.387,-15.726,30.740)
N9: (1.892,-15.847,28.568)
O5': (4.063,-12.769,29.270)
O3': (2.466,-12.345,25.890)
Image (generated by PyMOL):