Doublet info:
Details
Nucleotide types:
CG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2GDI:X63:X62
Extra
PDB:
ATOM 1 O3' G A 62 -17.457 -16.024 5.195 1.00 33.89 O
ATOM 2 P C A 63 -15.886 -15.779 4.999 1.00 33.13 P
ATOM 3 OP1 C A 63 -15.294 -15.512 6.328 1.00 35.23 O
ATOM 4 OP2 C A 63 -15.688 -14.820 3.895 1.00 32.87 O
ATOM 5 O5' C A 63 -15.441 -17.229 4.507 1.00 33.27 O
ATOM 6 C5' C A 63 -14.178 -17.499 3.942 1.00 31.42 C
ATOM 7 C4' C A 63 -14.066 -19.003 3.791 1.00 31.26 C
ATOM 8 O4' C A 63 -13.884 -19.580 5.110 1.00 32.36 O
ATOM 9 C3' C A 63 -15.323 -19.686 3.265 1.00 31.16 C
ATOM 10 O3' C A 63 -15.369 -19.671 1.841 1.00 31.30 O
ATOM 11 C2' C A 63 -15.137 -21.096 3.814 1.00 30.47 C
ATOM 12 O2' C A 63 -14.186 -21.842 3.080 1.00 30.24 O
ATOM 13 C1' C A 63 -14.607 -20.795 5.212 1.00 29.96 C
ATOM 14 N1 C A 63 -15.689 -20.642 6.236 1.00 29.96 N
ATOM 15 C2 C A 63 -16.404 -21.770 6.657 1.00 29.26 C
ATOM 16 O2 C A 63 -16.134 -22.880 6.182 1.00 29.48 O
ATOM 17 N3 C A 63 -17.384 -21.619 7.576 1.00 29.15 N
ATOM 18 C4 C A 63 -17.661 -20.417 8.077 1.00 29.27 C
ATOM 19 N4 C A 63 -18.638 -20.334 8.987 1.00 28.37 N
ATOM 20 C5 C A 63 -16.947 -19.253 7.664 1.00 29.28 C
ATOM 21 C6 C A 63 -15.976 -19.412 6.754 1.00 29.11 C
ATOM 22 P C A 64 -16.774 -19.635 1.067 1.00 32.67 P
ATOM 23 OP1 C A 64 -16.492 -19.335 -0.353 1.00 32.50 O
ATOM 24 OP2 C A 64 -17.711 -18.782 1.833 1.00 32.82 O
ATOM 25 O5' C A 64 -17.309 -21.137 1.179 1.00 31.94 O
TER
ATOM 1 O3' U B 61 -18.057 -15.736 10.753 1.00 32.25 O
ATOM 2 P G B 62 -19.327 -16.286 9.955 1.00 31.76 P
ATOM 3 OP1 G B 62 -20.480 -15.470 10.397 1.00 32.26 O
ATOM 4 OP2 G B 62 -19.382 -17.759 10.068 1.00 32.19 O
ATOM 5 O5' G B 62 -18.979 -15.914 8.441 1.00 32.08 O
ATOM 6 C5' G B 62 -19.735 -16.459 7.372 1.00 31.66 C
ATOM 7 C4' G B 62 -19.638 -15.563 6.153 1.00 32.62 C
ATOM 8 O4' G B 62 -20.389 -14.339 6.371 1.00 32.88 O
ATOM 9 C3' G B 62 -18.241 -15.047 5.853 1.00 32.86 C
ATOM 10 O3' G B 62 -17.457 -16.024 5.195 1.00 33.89 O
ATOM 11 C2' G B 62 -18.575 -13.899 4.917 1.00 32.85 C
ATOM 12 O2' G B 62 -18.932 -14.367 3.629 1.00 32.65 O
ATOM 13 C1' G B 62 -19.771 -13.288 5.645 1.00 33.49 C
ATOM 14 N9 G B 62 -19.371 -12.205 6.545 1.00 34.78 N
ATOM 15 C8 G B 62 -19.107 -12.258 7.897 1.00 34.91 C
ATOM 16 N7 G B 62 -18.752 -11.104 8.403 1.00 35.64 N
ATOM 17 C5 G B 62 -18.786 -10.231 7.320 1.00 34.62 C
ATOM 18 C6 G B 62 -18.507 -8.842 7.236 1.00 34.69 C
ATOM 19 O6 G B 62 -18.157 -8.068 8.137 1.00 35.27 O
ATOM 20 N1 G B 62 -18.658 -8.356 5.937 1.00 34.38 N
ATOM 21 C2 G B 62 -19.033 -9.117 4.854 1.00 34.43 C
ATOM 22 N2 G B 62 -19.130 -8.490 3.673 1.00 35.22 N
ATOM 23 N3 G B 62 -19.305 -10.411 4.922 1.00 34.57 N
ATOM 24 C4 G B 62 -19.158 -10.899 6.176 1.00 34.10 C
ATOM 25 P C B 63 -15.886 -15.779 4.999 1.00 33.13 P
ATOM 26 OP1 C B 63 -15.294 -15.512 6.328 1.00 35.23 O
ATOM 27 OP2 C B 63 -15.688 -14.820 3.895 1.00 32.87 O
ATOM 28 O5' C B 63 -15.441 -17.229 4.507 1.00 33.27 O
TER
ATOM 2 P C A 63 -15.886 -15.779 4.999 1.00 33.13 P
ATOM 3 OP1 C A 63 -15.294 -15.512 6.328 1.00 35.23 O
ATOM 4 OP2 C A 63 -15.688 -14.820 3.895 1.00 32.87 O
ATOM 5 O5' C A 63 -15.441 -17.229 4.507 1.00 33.27 O
ATOM 6 C5' C A 63 -14.178 -17.499 3.942 1.00 31.42 C
ATOM 7 C4' C A 63 -14.066 -19.003 3.791 1.00 31.26 C
ATOM 8 O4' C A 63 -13.884 -19.580 5.110 1.00 32.36 O
ATOM 9 C3' C A 63 -15.323 -19.686 3.265 1.00 31.16 C
ATOM 10 O3' C A 63 -15.369 -19.671 1.841 1.00 31.30 O
ATOM 11 C2' C A 63 -15.137 -21.096 3.814 1.00 30.47 C
ATOM 12 O2' C A 63 -14.186 -21.842 3.080 1.00 30.24 O
ATOM 13 C1' C A 63 -14.607 -20.795 5.212 1.00 29.96 C
ATOM 14 N1 C A 63 -15.689 -20.642 6.236 1.00 29.96 N
ATOM 15 C2 C A 63 -16.404 -21.770 6.657 1.00 29.26 C
ATOM 16 O2 C A 63 -16.134 -22.880 6.182 1.00 29.48 O
ATOM 17 N3 C A 63 -17.384 -21.619 7.576 1.00 29.15 N
ATOM 18 C4 C A 63 -17.661 -20.417 8.077 1.00 29.27 C
ATOM 19 N4 C A 63 -18.638 -20.334 8.987 1.00 28.37 N
ATOM 20 C5 C A 63 -16.947 -19.253 7.664 1.00 29.28 C
ATOM 21 C6 C A 63 -15.976 -19.412 6.754 1.00 29.11 C
ATOM 22 P C A 64 -16.774 -19.635 1.067 1.00 32.67 P
ATOM 23 OP1 C A 64 -16.492 -19.335 -0.353 1.00 32.50 O
ATOM 24 OP2 C A 64 -17.711 -18.782 1.833 1.00 32.82 O
ATOM 25 O5' C A 64 -17.309 -21.137 1.179 1.00 31.94 O
TER
ATOM 1 O3' U B 61 -18.057 -15.736 10.753 1.00 32.25 O
ATOM 2 P G B 62 -19.327 -16.286 9.955 1.00 31.76 P
ATOM 3 OP1 G B 62 -20.480 -15.470 10.397 1.00 32.26 O
ATOM 4 OP2 G B 62 -19.382 -17.759 10.068 1.00 32.19 O
ATOM 5 O5' G B 62 -18.979 -15.914 8.441 1.00 32.08 O
ATOM 6 C5' G B 62 -19.735 -16.459 7.372 1.00 31.66 C
ATOM 7 C4' G B 62 -19.638 -15.563 6.153 1.00 32.62 C
ATOM 8 O4' G B 62 -20.389 -14.339 6.371 1.00 32.88 O
ATOM 9 C3' G B 62 -18.241 -15.047 5.853 1.00 32.86 C
ATOM 10 O3' G B 62 -17.457 -16.024 5.195 1.00 33.89 O
ATOM 11 C2' G B 62 -18.575 -13.899 4.917 1.00 32.85 C
ATOM 12 O2' G B 62 -18.932 -14.367 3.629 1.00 32.65 O
ATOM 13 C1' G B 62 -19.771 -13.288 5.645 1.00 33.49 C
ATOM 14 N9 G B 62 -19.371 -12.205 6.545 1.00 34.78 N
ATOM 15 C8 G B 62 -19.107 -12.258 7.897 1.00 34.91 C
ATOM 16 N7 G B 62 -18.752 -11.104 8.403 1.00 35.64 N
ATOM 17 C5 G B 62 -18.786 -10.231 7.320 1.00 34.62 C
ATOM 18 C6 G B 62 -18.507 -8.842 7.236 1.00 34.69 C
ATOM 19 O6 G B 62 -18.157 -8.068 8.137 1.00 35.27 O
ATOM 20 N1 G B 62 -18.658 -8.356 5.937 1.00 34.38 N
ATOM 21 C2 G B 62 -19.033 -9.117 4.854 1.00 34.43 C
ATOM 22 N2 G B 62 -19.130 -8.490 3.673 1.00 35.22 N
ATOM 23 N3 G B 62 -19.305 -10.411 4.922 1.00 34.57 N
ATOM 24 C4 G B 62 -19.158 -10.899 6.176 1.00 34.10 C
ATOM 25 P C B 63 -15.886 -15.779 4.999 1.00 33.13 P
ATOM 26 OP1 C B 63 -15.294 -15.512 6.328 1.00 35.23 O
ATOM 27 OP2 C B 63 -15.688 -14.820 3.895 1.00 32.87 O
ATOM 28 O5' C B 63 -15.441 -17.229 4.507 1.00 33.27 O
TER
Atoms:
C2: (-16.404,-21.770,6.657)
OP1: (-15.294,-15.512,6.328)
OP2: (-15.688,-14.820,3.895)
C4: (-17.661,-20.417,8.077)
O5': (-15.441,-17.229,4.507)
C3': (-15.323,-19.686,3.265)
C1': (-14.607,-20.795,5.212)
O4': (-13.884,-19.580,5.110)
C5': (-14.178,-17.499,3.942)
P: (-15.886,-15.779,4.999)
O2: (-16.134,-22.880,6.182)
C4': (-14.066,-19.003,3.791)
C2': (-15.137,-21.096,3.814)
O2': (-14.186,-21.842,3.080)
N1: (-15.689,-20.642,6.236)
N3: (-17.384,-21.619,7.576)
N4: (-18.638,-20.334,8.987)
C6: (-15.976,-19.412,6.754)
C5: (-16.947,-19.253,7.664)
O3': (-15.369,-19.671,1.841)
OP1: (-15.294,-15.512,6.328)
OP2: (-15.688,-14.820,3.895)
C4: (-17.661,-20.417,8.077)
O5': (-15.441,-17.229,4.507)
C3': (-15.323,-19.686,3.265)
C1': (-14.607,-20.795,5.212)
O4': (-13.884,-19.580,5.110)
C5': (-14.178,-17.499,3.942)
P: (-15.886,-15.779,4.999)
O2: (-16.134,-22.880,6.182)
C4': (-14.066,-19.003,3.791)
C2': (-15.137,-21.096,3.814)
O2': (-14.186,-21.842,3.080)
N1: (-15.689,-20.642,6.236)
N3: (-17.384,-21.619,7.576)
N4: (-18.638,-20.334,8.987)
C6: (-15.976,-19.412,6.754)
C5: (-16.947,-19.253,7.664)
O3': (-15.369,-19.671,1.841)
OP1: (-20.480,-15.470,10.397)
OP2: (-19.382,-17.759,10.068)
C3': (-18.241,-15.047,5.853)
C1': (-19.771,-13.288,5.645)
C5': (-19.735,-16.459,7.372)
O6: (-18.157,-8.068,8.137)
O4': (-20.389,-14.339,6.371)
C8: (-19.107,-12.258,7.897)
C2: (-19.033,-9.117,4.854)
C6: (-18.507,-8.842,7.236)
C5: (-18.786,-10.231,7.320)
C4: (-19.158,-10.899,6.176)
P: (-19.327,-16.286,9.955)
C4': (-19.638,-15.563,6.153)
C2': (-18.575,-13.899,4.917)
O2': (-18.932,-14.367,3.629)
N1: (-18.658,-8.356,5.937)
N2: (-19.130,-8.490,3.673)
N3: (-19.305,-10.411,4.922)
N7: (-18.752,-11.104,8.403)
N9: (-19.371,-12.205,6.545)
O5': (-18.979,-15.914,8.441)
O3': (-17.457,-16.024,5.195)
OP2: (-19.382,-17.759,10.068)
C3': (-18.241,-15.047,5.853)
C1': (-19.771,-13.288,5.645)
C5': (-19.735,-16.459,7.372)
O6: (-18.157,-8.068,8.137)
O4': (-20.389,-14.339,6.371)
C8: (-19.107,-12.258,7.897)
C2: (-19.033,-9.117,4.854)
C6: (-18.507,-8.842,7.236)
C5: (-18.786,-10.231,7.320)
C4: (-19.158,-10.899,6.176)
P: (-19.327,-16.286,9.955)
C4': (-19.638,-15.563,6.153)
C2': (-18.575,-13.899,4.917)
O2': (-18.932,-14.367,3.629)
N1: (-18.658,-8.356,5.937)
N2: (-19.130,-8.490,3.673)
N3: (-19.305,-10.411,4.922)
N7: (-18.752,-11.104,8.403)
N9: (-19.371,-12.205,6.545)
O5': (-18.979,-15.914,8.441)
O3': (-17.457,-16.024,5.195)
Image (generated by PyMOL):