Doublet info:
Details
Nucleotide types:
CG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2YDH:A68:A67
Extra
PDB:
ATOM 1 O3' G A 67 4.535 -30.197 17.816 1.00108.13 O
ATOM 2 P C A 68 3.810 -31.518 18.369 1.00110.37 P
ATOM 3 OP1 C A 68 2.841 -31.167 19.451 1.00110.04 O
ATOM 4 OP2 C A 68 4.894 -32.502 18.621 1.00110.17 O
ATOM 5 O5' C A 68 2.981 -32.025 17.079 1.00108.71 O
ATOM 6 C5' C A 68 2.677 -31.174 15.956 1.00107.53 C
ATOM 7 C4' C A 68 3.492 -31.567 14.727 1.00106.88 C
ATOM 8 O4' C A 68 4.247 -30.439 14.209 1.00105.69 O
ATOM 9 C3' C A 68 4.573 -32.624 14.936 1.00106.31 C
ATOM 10 O3' C A 68 4.044 -33.930 14.933 1.00106.58 O
ATOM 11 C2' C A 68 5.471 -32.409 13.734 1.00104.88 C
ATOM 12 O2' C A 68 4.946 -32.985 12.551 1.00102.78 O
ATOM 13 C1' C A 68 5.499 -30.886 13.694 1.00104.72 C
ATOM 14 N1 C A 68 6.645 -30.306 14.491 1.00104.07 N
ATOM 15 C2 C A 68 7.979 -30.448 14.043 1.00104.50 C
ATOM 16 O2 C A 68 8.227 -31.063 12.993 1.00103.23 O
ATOM 17 N3 C A 68 8.985 -29.901 14.787 1.00104.73 N
ATOM 18 C4 C A 68 8.705 -29.246 15.918 1.00103.74 C
ATOM 19 N4 C A 68 9.708 -28.726 16.626 1.00103.69 N
ATOM 20 C5 C A 68 7.370 -29.088 16.379 1.00103.51 C
ATOM 21 C6 C A 68 6.387 -29.624 15.649 1.00103.56 C
ATOM 22 P A A 69 4.930 -35.085 15.589 1.00107.92 P
ATOM 23 OP1 A A 69 4.169 -36.361 15.441 1.00106.94 O
ATOM 24 OP2 A A 69 5.358 -34.575 16.928 1.00107.16 O
ATOM 25 O5' A A 69 6.215 -35.194 14.641 1.00104.22 O
TER
ATOM 1 O3' U B 66 9.256 -27.529 21.287 1.00 95.57 O
ATOM 2 P G B 67 9.049 -28.340 19.924 1.00100.28 P
ATOM 3 OP1 G B 67 9.405 -29.743 20.222 1.00100.12 O
ATOM 4 OP2 G B 67 9.758 -27.671 18.808 1.00 97.27 O
ATOM 5 O5' G B 67 7.458 -28.209 19.708 1.00100.39 O
ATOM 6 C5' G B 67 6.579 -29.190 20.262 1.00102.07 C
ATOM 7 C4' G B 67 5.102 -28.942 19.966 1.00103.21 C
ATOM 8 O4' G B 67 4.697 -27.649 20.489 1.00102.06 O
ATOM 9 C3' G B 67 4.688 -28.901 18.486 1.00104.83 C
ATOM 10 O3' G B 67 4.535 -30.197 17.816 1.00108.13 O
ATOM 11 C2' G B 67 3.413 -28.050 18.518 1.00103.21 C
ATOM 12 O2' G B 67 2.212 -28.745 18.845 1.00102.61 O
ATOM 13 C1' G B 67 3.836 -27.014 19.568 1.00100.82 C
ATOM 14 N9 G B 67 4.580 -25.893 19.002 1.00 98.52 N
ATOM 15 C8 G B 67 5.879 -25.861 18.532 1.00 97.63 C
ATOM 16 N7 G B 67 6.256 -24.696 18.091 1.00 96.74 N
ATOM 17 C5 G B 67 5.128 -23.907 18.275 1.00 96.48 C
ATOM 18 C6 G B 67 4.920 -22.540 17.984 1.00 96.89 C
ATOM 19 O6 G B 67 5.729 -21.749 17.478 1.00 97.92 O
ATOM 20 N1 G B 67 3.627 -22.124 18.334 1.00 96.87 N
ATOM 21 C2 G B 67 2.669 -22.948 18.891 1.00 95.98 C
ATOM 22 N2 G B 67 1.485 -22.404 19.161 1.00 94.73 N
ATOM 23 N3 G B 67 2.853 -24.222 19.168 1.00 95.31 N
ATOM 24 C4 G B 67 4.096 -24.627 18.835 1.00 96.55 C
ATOM 25 P C B 68 3.810 -31.518 18.369 1.00110.37 P
ATOM 26 OP1 C B 68 2.841 -31.167 19.451 1.00110.04 O
ATOM 27 OP2 C B 68 4.894 -32.502 18.621 1.00110.17 O
ATOM 28 O5' C B 68 2.981 -32.025 17.079 1.00108.71 O
TER
ATOM 2 P C A 68 3.810 -31.518 18.369 1.00110.37 P
ATOM 3 OP1 C A 68 2.841 -31.167 19.451 1.00110.04 O
ATOM 4 OP2 C A 68 4.894 -32.502 18.621 1.00110.17 O
ATOM 5 O5' C A 68 2.981 -32.025 17.079 1.00108.71 O
ATOM 6 C5' C A 68 2.677 -31.174 15.956 1.00107.53 C
ATOM 7 C4' C A 68 3.492 -31.567 14.727 1.00106.88 C
ATOM 8 O4' C A 68 4.247 -30.439 14.209 1.00105.69 O
ATOM 9 C3' C A 68 4.573 -32.624 14.936 1.00106.31 C
ATOM 10 O3' C A 68 4.044 -33.930 14.933 1.00106.58 O
ATOM 11 C2' C A 68 5.471 -32.409 13.734 1.00104.88 C
ATOM 12 O2' C A 68 4.946 -32.985 12.551 1.00102.78 O
ATOM 13 C1' C A 68 5.499 -30.886 13.694 1.00104.72 C
ATOM 14 N1 C A 68 6.645 -30.306 14.491 1.00104.07 N
ATOM 15 C2 C A 68 7.979 -30.448 14.043 1.00104.50 C
ATOM 16 O2 C A 68 8.227 -31.063 12.993 1.00103.23 O
ATOM 17 N3 C A 68 8.985 -29.901 14.787 1.00104.73 N
ATOM 18 C4 C A 68 8.705 -29.246 15.918 1.00103.74 C
ATOM 19 N4 C A 68 9.708 -28.726 16.626 1.00103.69 N
ATOM 20 C5 C A 68 7.370 -29.088 16.379 1.00103.51 C
ATOM 21 C6 C A 68 6.387 -29.624 15.649 1.00103.56 C
ATOM 22 P A A 69 4.930 -35.085 15.589 1.00107.92 P
ATOM 23 OP1 A A 69 4.169 -36.361 15.441 1.00106.94 O
ATOM 24 OP2 A A 69 5.358 -34.575 16.928 1.00107.16 O
ATOM 25 O5' A A 69 6.215 -35.194 14.641 1.00104.22 O
TER
ATOM 1 O3' U B 66 9.256 -27.529 21.287 1.00 95.57 O
ATOM 2 P G B 67 9.049 -28.340 19.924 1.00100.28 P
ATOM 3 OP1 G B 67 9.405 -29.743 20.222 1.00100.12 O
ATOM 4 OP2 G B 67 9.758 -27.671 18.808 1.00 97.27 O
ATOM 5 O5' G B 67 7.458 -28.209 19.708 1.00100.39 O
ATOM 6 C5' G B 67 6.579 -29.190 20.262 1.00102.07 C
ATOM 7 C4' G B 67 5.102 -28.942 19.966 1.00103.21 C
ATOM 8 O4' G B 67 4.697 -27.649 20.489 1.00102.06 O
ATOM 9 C3' G B 67 4.688 -28.901 18.486 1.00104.83 C
ATOM 10 O3' G B 67 4.535 -30.197 17.816 1.00108.13 O
ATOM 11 C2' G B 67 3.413 -28.050 18.518 1.00103.21 C
ATOM 12 O2' G B 67 2.212 -28.745 18.845 1.00102.61 O
ATOM 13 C1' G B 67 3.836 -27.014 19.568 1.00100.82 C
ATOM 14 N9 G B 67 4.580 -25.893 19.002 1.00 98.52 N
ATOM 15 C8 G B 67 5.879 -25.861 18.532 1.00 97.63 C
ATOM 16 N7 G B 67 6.256 -24.696 18.091 1.00 96.74 N
ATOM 17 C5 G B 67 5.128 -23.907 18.275 1.00 96.48 C
ATOM 18 C6 G B 67 4.920 -22.540 17.984 1.00 96.89 C
ATOM 19 O6 G B 67 5.729 -21.749 17.478 1.00 97.92 O
ATOM 20 N1 G B 67 3.627 -22.124 18.334 1.00 96.87 N
ATOM 21 C2 G B 67 2.669 -22.948 18.891 1.00 95.98 C
ATOM 22 N2 G B 67 1.485 -22.404 19.161 1.00 94.73 N
ATOM 23 N3 G B 67 2.853 -24.222 19.168 1.00 95.31 N
ATOM 24 C4 G B 67 4.096 -24.627 18.835 1.00 96.55 C
ATOM 25 P C B 68 3.810 -31.518 18.369 1.00110.37 P
ATOM 26 OP1 C B 68 2.841 -31.167 19.451 1.00110.04 O
ATOM 27 OP2 C B 68 4.894 -32.502 18.621 1.00110.17 O
ATOM 28 O5' C B 68 2.981 -32.025 17.079 1.00108.71 O
TER
Atoms:
C2: (7.979,-30.448,14.043)
OP1: (2.841,-31.167,19.451)
OP2: (4.894,-32.502,18.621)
C4: (8.705,-29.246,15.918)
O5': (2.981,-32.025,17.079)
C3': (4.573,-32.624,14.936)
C1': (5.499,-30.886,13.694)
O4': (4.247,-30.439,14.209)
C5': (2.677,-31.174,15.956)
P: (3.810,-31.518,18.369)
O2: (8.227,-31.063,12.993)
C4': (3.492,-31.567,14.727)
C2': (5.471,-32.409,13.734)
O2': (4.946,-32.985,12.551)
N1: (6.645,-30.306,14.491)
N3: (8.985,-29.901,14.787)
N4: (9.708,-28.726,16.626)
C6: (6.387,-29.624,15.649)
C5: (7.370,-29.088,16.379)
O3': (4.044,-33.930,14.933)
OP1: (2.841,-31.167,19.451)
OP2: (4.894,-32.502,18.621)
C4: (8.705,-29.246,15.918)
O5': (2.981,-32.025,17.079)
C3': (4.573,-32.624,14.936)
C1': (5.499,-30.886,13.694)
O4': (4.247,-30.439,14.209)
C5': (2.677,-31.174,15.956)
P: (3.810,-31.518,18.369)
O2: (8.227,-31.063,12.993)
C4': (3.492,-31.567,14.727)
C2': (5.471,-32.409,13.734)
O2': (4.946,-32.985,12.551)
N1: (6.645,-30.306,14.491)
N3: (8.985,-29.901,14.787)
N4: (9.708,-28.726,16.626)
C6: (6.387,-29.624,15.649)
C5: (7.370,-29.088,16.379)
O3': (4.044,-33.930,14.933)
OP1: (9.405,-29.743,20.222)
OP2: (9.758,-27.671,18.808)
C3': (4.688,-28.901,18.486)
C1': (3.836,-27.014,19.568)
C5': (6.579,-29.190,20.262)
O6: (5.729,-21.749,17.478)
O4': (4.697,-27.649,20.489)
C8: (5.879,-25.861,18.532)
C2: (2.669,-22.948,18.891)
C6: (4.920,-22.540,17.984)
C5: (5.128,-23.907,18.275)
C4: (4.096,-24.627,18.835)
P: (9.049,-28.340,19.924)
C4': (5.102,-28.942,19.966)
C2': (3.413,-28.050,18.518)
O2': (2.212,-28.745,18.845)
N1: (3.627,-22.124,18.334)
N2: (1.485,-22.404,19.161)
N3: (2.853,-24.222,19.168)
N7: (6.256,-24.696,18.091)
N9: (4.580,-25.893,19.002)
O5': (7.458,-28.209,19.708)
O3': (4.535,-30.197,17.816)
OP2: (9.758,-27.671,18.808)
C3': (4.688,-28.901,18.486)
C1': (3.836,-27.014,19.568)
C5': (6.579,-29.190,20.262)
O6: (5.729,-21.749,17.478)
O4': (4.697,-27.649,20.489)
C8: (5.879,-25.861,18.532)
C2: (2.669,-22.948,18.891)
C6: (4.920,-22.540,17.984)
C5: (5.128,-23.907,18.275)
C4: (4.096,-24.627,18.835)
P: (9.049,-28.340,19.924)
C4': (5.102,-28.942,19.966)
C2': (3.413,-28.050,18.518)
O2': (2.212,-28.745,18.845)
N1: (3.627,-22.124,18.334)
N2: (1.485,-22.404,19.161)
N3: (2.853,-24.222,19.168)
N7: (6.256,-24.696,18.091)
N9: (4.580,-25.893,19.002)
O5': (7.458,-28.209,19.708)
O3': (4.535,-30.197,17.816)
Image (generated by PyMOL):