Doublet info:
Details
Nucleotide types:
CG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3SKZ:A39:A11
Extra
PDB:
ATOM 1 O3' C A 38 5.880 2.362 -47.438 1.00 49.21 O
ATOM 2 P C A 39 6.303 3.723 -46.698 1.00 54.82 P
ATOM 3 OP1 C A 39 7.701 3.548 -46.207 1.00 50.46 O
ATOM 4 OP2 C A 39 5.236 4.025 -45.725 1.00 48.74 O
ATOM 5 O5' C A 39 6.269 4.786 -47.873 1.00 72.02 O
ATOM 6 C5' C A 39 6.216 6.173 -47.591 1.00 68.19 C
ATOM 7 C4' C A 39 5.388 6.902 -48.612 1.00 59.82 C
ATOM 8 O4' C A 39 5.162 6.046 -49.751 1.00 59.54 O
ATOM 9 C3' C A 39 3.989 7.302 -48.177 1.00 53.65 C
ATOM 10 O3' C A 39 3.979 8.483 -47.405 1.00 50.22 O
ATOM 11 C2' C A 39 3.267 7.444 -49.500 1.00 59.06 C
ATOM 12 O2' C A 39 3.613 8.672 -50.126 1.00 61.21 O
ATOM 13 C1' C A 39 3.895 6.310 -50.300 1.00 59.74 C
ATOM 14 N1 C A 39 3.092 5.077 -50.248 1.00 55.61 N
ATOM 15 C2 C A 39 1.983 5.114 -51.075 1.00 53.00 C
ATOM 16 O2 C A 39 1.783 6.154 -51.720 1.00 57.28 O
ATOM 17 N3 C A 39 1.174 4.047 -51.145 1.00 46.52 N
ATOM 18 C4 C A 39 1.451 2.964 -50.432 1.00 43.69 C
ATOM 19 N4 C A 39 0.585 1.954 -50.580 1.00 41.03 N
ATOM 20 C5 C A 39 2.604 2.884 -49.573 1.00 37.34 C
ATOM 21 C6 C A 39 3.401 3.963 -49.510 1.00 42.15 C
ATOM 22 P U A 40 2.934 8.659 -46.215 1.00 56.22 P
ATOM 23 OP1 U A 40 3.459 9.720 -45.331 1.00 55.16 O
ATOM 24 OP2 U A 40 2.682 7.313 -45.646 1.00 51.98 O
ATOM 25 O5' U A 40 1.637 9.171 -46.972 1.00 54.32 O
TER
ATOM 1 O3' A B 10 0.800 -1.920 -47.146 1.00 34.09 O
ATOM 2 P G B 11 1.225 -0.515 -47.805 1.00 36.27 P
ATOM 3 OP1 G B 11 0.285 0.508 -47.301 1.00 34.43 O
ATOM 4 OP2 G B 11 1.338 -0.726 -49.263 1.00 46.93 O
ATOM 5 O5' G B 11 2.666 -0.255 -47.194 1.00 53.94 O
ATOM 6 C5' G B 11 2.911 -0.396 -45.803 1.00 36.55 C
ATOM 7 C4' G B 11 3.718 -1.635 -45.515 1.00 41.92 C
ATOM 8 O4' G B 11 5.027 -1.506 -46.126 1.00 41.90 O
ATOM 9 C3' G B 11 3.958 -1.933 -44.024 1.00 44.76 C
ATOM 10 O3' G B 11 3.603 -3.276 -43.718 1.00 45.51 O
ATOM 11 C2' G B 11 5.464 -1.761 -43.839 1.00 39.00 C
ATOM 12 O2' G B 11 6.033 -2.670 -42.927 1.00 47.82 O
ATOM 13 C1' G B 11 6.003 -1.998 -45.230 1.00 40.04 C
ATOM 14 N9 G B 11 7.274 -1.323 -45.481 1.00 37.51 N
ATOM 15 C8 G B 11 7.551 0.023 -45.437 1.00 37.94 C
ATOM 16 N7 G B 11 8.809 0.279 -45.678 1.00 40.47 N
ATOM 17 C5 G B 11 9.381 -0.976 -45.883 1.00 43.16 C
ATOM 18 C6 G B 11 10.711 -1.340 -46.198 1.00 44.91 C
ATOM 19 O6 G B 11 11.666 -0.577 -46.355 1.00 46.60 O
ATOM 20 N1 G B 11 10.866 -2.719 -46.321 1.00 39.68 N
ATOM 21 C2 G B 11 9.857 -3.633 -46.157 1.00 41.57 C
ATOM 22 N2 G B 11 10.189 -4.919 -46.307 1.00 43.48 N
ATOM 23 N3 G B 11 8.612 -3.315 -45.858 1.00 38.25 N
ATOM 24 C4 G B 11 8.451 -1.978 -45.745 1.00 38.51 C
ATOM 25 P G B 12 2.551 -3.550 -42.537 1.00 57.33 P
ATOM 26 OP1 G B 12 1.294 -2.873 -42.923 1.00 55.79 O
ATOM 27 OP2 G B 12 3.205 -3.164 -41.267 1.00 62.65 O
ATOM 28 O5' G B 12 2.366 -5.129 -42.587 1.00 33.97 O
TER
ATOM 2 P C A 39 6.303 3.723 -46.698 1.00 54.82 P
ATOM 3 OP1 C A 39 7.701 3.548 -46.207 1.00 50.46 O
ATOM 4 OP2 C A 39 5.236 4.025 -45.725 1.00 48.74 O
ATOM 5 O5' C A 39 6.269 4.786 -47.873 1.00 72.02 O
ATOM 6 C5' C A 39 6.216 6.173 -47.591 1.00 68.19 C
ATOM 7 C4' C A 39 5.388 6.902 -48.612 1.00 59.82 C
ATOM 8 O4' C A 39 5.162 6.046 -49.751 1.00 59.54 O
ATOM 9 C3' C A 39 3.989 7.302 -48.177 1.00 53.65 C
ATOM 10 O3' C A 39 3.979 8.483 -47.405 1.00 50.22 O
ATOM 11 C2' C A 39 3.267 7.444 -49.500 1.00 59.06 C
ATOM 12 O2' C A 39 3.613 8.672 -50.126 1.00 61.21 O
ATOM 13 C1' C A 39 3.895 6.310 -50.300 1.00 59.74 C
ATOM 14 N1 C A 39 3.092 5.077 -50.248 1.00 55.61 N
ATOM 15 C2 C A 39 1.983 5.114 -51.075 1.00 53.00 C
ATOM 16 O2 C A 39 1.783 6.154 -51.720 1.00 57.28 O
ATOM 17 N3 C A 39 1.174 4.047 -51.145 1.00 46.52 N
ATOM 18 C4 C A 39 1.451 2.964 -50.432 1.00 43.69 C
ATOM 19 N4 C A 39 0.585 1.954 -50.580 1.00 41.03 N
ATOM 20 C5 C A 39 2.604 2.884 -49.573 1.00 37.34 C
ATOM 21 C6 C A 39 3.401 3.963 -49.510 1.00 42.15 C
ATOM 22 P U A 40 2.934 8.659 -46.215 1.00 56.22 P
ATOM 23 OP1 U A 40 3.459 9.720 -45.331 1.00 55.16 O
ATOM 24 OP2 U A 40 2.682 7.313 -45.646 1.00 51.98 O
ATOM 25 O5' U A 40 1.637 9.171 -46.972 1.00 54.32 O
TER
ATOM 1 O3' A B 10 0.800 -1.920 -47.146 1.00 34.09 O
ATOM 2 P G B 11 1.225 -0.515 -47.805 1.00 36.27 P
ATOM 3 OP1 G B 11 0.285 0.508 -47.301 1.00 34.43 O
ATOM 4 OP2 G B 11 1.338 -0.726 -49.263 1.00 46.93 O
ATOM 5 O5' G B 11 2.666 -0.255 -47.194 1.00 53.94 O
ATOM 6 C5' G B 11 2.911 -0.396 -45.803 1.00 36.55 C
ATOM 7 C4' G B 11 3.718 -1.635 -45.515 1.00 41.92 C
ATOM 8 O4' G B 11 5.027 -1.506 -46.126 1.00 41.90 O
ATOM 9 C3' G B 11 3.958 -1.933 -44.024 1.00 44.76 C
ATOM 10 O3' G B 11 3.603 -3.276 -43.718 1.00 45.51 O
ATOM 11 C2' G B 11 5.464 -1.761 -43.839 1.00 39.00 C
ATOM 12 O2' G B 11 6.033 -2.670 -42.927 1.00 47.82 O
ATOM 13 C1' G B 11 6.003 -1.998 -45.230 1.00 40.04 C
ATOM 14 N9 G B 11 7.274 -1.323 -45.481 1.00 37.51 N
ATOM 15 C8 G B 11 7.551 0.023 -45.437 1.00 37.94 C
ATOM 16 N7 G B 11 8.809 0.279 -45.678 1.00 40.47 N
ATOM 17 C5 G B 11 9.381 -0.976 -45.883 1.00 43.16 C
ATOM 18 C6 G B 11 10.711 -1.340 -46.198 1.00 44.91 C
ATOM 19 O6 G B 11 11.666 -0.577 -46.355 1.00 46.60 O
ATOM 20 N1 G B 11 10.866 -2.719 -46.321 1.00 39.68 N
ATOM 21 C2 G B 11 9.857 -3.633 -46.157 1.00 41.57 C
ATOM 22 N2 G B 11 10.189 -4.919 -46.307 1.00 43.48 N
ATOM 23 N3 G B 11 8.612 -3.315 -45.858 1.00 38.25 N
ATOM 24 C4 G B 11 8.451 -1.978 -45.745 1.00 38.51 C
ATOM 25 P G B 12 2.551 -3.550 -42.537 1.00 57.33 P
ATOM 26 OP1 G B 12 1.294 -2.873 -42.923 1.00 55.79 O
ATOM 27 OP2 G B 12 3.205 -3.164 -41.267 1.00 62.65 O
ATOM 28 O5' G B 12 2.366 -5.129 -42.587 1.00 33.97 O
TER
Atoms:
C2: (1.983,5.114,-51.075)
OP1: (7.701,3.548,-46.207)
OP2: (5.236,4.025,-45.725)
C4: (1.451,2.964,-50.432)
O5': (6.269,4.786,-47.873)
C3': (3.989,7.302,-48.177)
C1': (3.895,6.310,-50.300)
O4': (5.162,6.046,-49.751)
C5': (6.216,6.173,-47.591)
P: (6.303,3.723,-46.698)
O2: (1.783,6.154,-51.720)
C4': (5.388,6.902,-48.612)
C2': (3.267,7.444,-49.500)
O2': (3.613,8.672,-50.126)
N1: (3.092,5.077,-50.248)
N3: (1.174,4.047,-51.145)
N4: (0.585,1.954,-50.580)
C6: (3.401,3.963,-49.510)
C5: (2.604,2.884,-49.573)
O3': (3.979,8.483,-47.405)
OP1: (7.701,3.548,-46.207)
OP2: (5.236,4.025,-45.725)
C4: (1.451,2.964,-50.432)
O5': (6.269,4.786,-47.873)
C3': (3.989,7.302,-48.177)
C1': (3.895,6.310,-50.300)
O4': (5.162,6.046,-49.751)
C5': (6.216,6.173,-47.591)
P: (6.303,3.723,-46.698)
O2: (1.783,6.154,-51.720)
C4': (5.388,6.902,-48.612)
C2': (3.267,7.444,-49.500)
O2': (3.613,8.672,-50.126)
N1: (3.092,5.077,-50.248)
N3: (1.174,4.047,-51.145)
N4: (0.585,1.954,-50.580)
C6: (3.401,3.963,-49.510)
C5: (2.604,2.884,-49.573)
O3': (3.979,8.483,-47.405)
OP1: (0.285,0.508,-47.301)
OP2: (1.338,-0.726,-49.263)
C3': (3.958,-1.933,-44.024)
C1': (6.003,-1.998,-45.230)
C5': (2.911,-0.396,-45.803)
O6: (11.666,-0.577,-46.355)
O4': (5.027,-1.506,-46.126)
C8: (7.551,0.023,-45.437)
C2: (9.857,-3.633,-46.157)
C6: (10.711,-1.340,-46.198)
C5: (9.381,-0.976,-45.883)
C4: (8.451,-1.978,-45.745)
P: (1.225,-0.515,-47.805)
C4': (3.718,-1.635,-45.515)
C2': (5.464,-1.761,-43.839)
O2': (6.033,-2.670,-42.927)
N1: (10.866,-2.719,-46.321)
N2: (10.189,-4.919,-46.307)
N3: (8.612,-3.315,-45.858)
N7: (8.809,0.279,-45.678)
N9: (7.274,-1.323,-45.481)
O5': (2.666,-0.255,-47.194)
O3': (3.603,-3.276,-43.718)
OP2: (1.338,-0.726,-49.263)
C3': (3.958,-1.933,-44.024)
C1': (6.003,-1.998,-45.230)
C5': (2.911,-0.396,-45.803)
O6: (11.666,-0.577,-46.355)
O4': (5.027,-1.506,-46.126)
C8: (7.551,0.023,-45.437)
C2: (9.857,-3.633,-46.157)
C6: (10.711,-1.340,-46.198)
C5: (9.381,-0.976,-45.883)
C4: (8.451,-1.978,-45.745)
P: (1.225,-0.515,-47.805)
C4': (3.718,-1.635,-45.515)
C2': (5.464,-1.761,-43.839)
O2': (6.033,-2.670,-42.927)
N1: (10.866,-2.719,-46.321)
N2: (10.189,-4.919,-46.307)
N3: (8.612,-3.315,-45.858)
N7: (8.809,0.279,-45.678)
N9: (7.274,-1.323,-45.481)
O5': (2.666,-0.255,-47.194)
O3': (3.603,-3.276,-43.718)
Image (generated by PyMOL):