Doublet info:
Details
Nucleotide types:
CC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJN:99:98
Extra
PDB:
ATOM 1 O3' C A 8 51.757 42.325 98.361 1.00 50.30 O
ATOM 2 P C A 9 53.096 43.217 98.428 1.00 51.57 P
ATOM 3 OP1 C A 9 52.720 44.501 99.064 1.00 52.79 O
ATOM 4 OP2 C A 9 53.737 43.223 97.091 1.00 52.26 O
ATOM 5 O5' C A 9 54.072 42.445 99.423 1.00 51.72 O
ATOM 6 C5' C A 9 53.720 42.239 100.803 1.00 51.48 C
ATOM 7 C4' C A 9 54.754 41.372 101.495 1.00 51.14 C
ATOM 8 O4' C A 9 54.886 40.113 100.775 1.00 51.12 O
ATOM 9 C3' C A 9 56.168 41.934 101.624 1.00 49.64 C
ATOM 10 O3' C A 9 56.747 41.439 102.818 1.00 50.21 O
ATOM 11 C2' C A 9 56.892 41.286 100.456 1.00 49.47 C
ATOM 12 O2' C A 9 58.274 41.162 100.705 1.00 49.24 O
ATOM 13 C1' C A 9 56.238 39.907 100.428 1.00 50.08 C
ATOM 14 N1 C A 9 56.289 39.258 99.110 1.00 50.11 N
ATOM 15 C2 C A 9 57.098 38.123 98.941 1.00 51.03 C
ATOM 16 O2 C A 9 57.709 37.660 99.920 1.00 51.89 O
ATOM 17 N3 C A 9 57.187 37.557 97.719 1.00 51.03 N
ATOM 18 C4 C A 9 56.495 38.066 96.697 1.00 51.30 C
ATOM 19 N4 C A 9 56.624 37.484 95.503 1.00 53.01 N
ATOM 20 C5 C A 9 55.643 39.198 96.850 1.00 51.19 C
ATOM 21 C6 C A 9 55.571 39.756 98.059 1.00 49.67 C
ATOM 22 P A A 10 56.917 42.404 104.081 1.00 51.84 P
ATOM 23 OP1 A A 10 55.642 43.122 104.319 1.00 51.63 O
ATOM 24 OP2 A A 10 58.161 43.171 103.861 1.00 51.68 O
ATOM 25 O5' A A 10 57.149 41.400 105.295 1.00 53.06 O
TER
ATOM 1 O3' G B 7 52.141 38.522 93.386 1.00 51.87 O
ATOM 2 P C B 8 53.106 39.668 93.958 1.00 52.75 P
ATOM 3 OP1 C B 8 52.833 40.890 93.156 1.00 54.38 O
ATOM 4 OP2 C B 8 54.486 39.135 94.029 1.00 51.80 O
ATOM 5 O5' C B 8 52.576 39.897 95.443 1.00 51.04 O
ATOM 6 C5' C B 8 51.318 40.552 95.673 1.00 49.99 C
ATOM 7 C4' C B 8 50.895 40.403 97.115 1.00 50.28 C
ATOM 8 O4' C B 8 50.772 38.993 97.436 1.00 49.10 O
ATOM 9 C3' C B 8 51.849 40.915 98.181 1.00 49.82 C
ATOM 10 O3' C B 8 51.757 42.325 98.361 1.00 50.30 O
ATOM 11 C2' C B 8 51.345 40.179 99.416 1.00 49.47 C
ATOM 12 O2' C B 8 50.205 40.779 99.990 1.00 48.71 O
ATOM 13 C1' C B 8 50.964 38.816 98.828 1.00 49.22 C
ATOM 14 N1 C B 8 52.006 37.803 99.045 1.00 49.98 N
ATOM 15 C2 C B 8 52.064 37.160 100.289 1.00 50.36 C
ATOM 16 O2 C B 8 51.198 37.416 101.139 1.00 51.59 O
ATOM 17 N3 C B 8 53.053 36.278 100.532 1.00 49.60 N
ATOM 18 C4 C B 8 53.955 36.014 99.588 1.00 50.22 C
ATOM 19 N4 C B 8 54.929 35.148 99.882 1.00 49.78 N
ATOM 20 C5 C B 8 53.901 36.626 98.301 1.00 50.57 C
ATOM 21 C6 C B 8 52.919 37.504 98.073 1.00 50.10 C
ATOM 22 P C B 9 53.096 43.217 98.428 1.00 51.57 P
ATOM 23 OP1 C B 9 52.720 44.501 99.064 1.00 52.79 O
ATOM 24 OP2 C B 9 53.737 43.223 97.091 1.00 52.26 O
ATOM 25 O5' C B 9 54.072 42.445 99.423 1.00 51.72 O
TER
ATOM 2 P C A 9 53.096 43.217 98.428 1.00 51.57 P
ATOM 3 OP1 C A 9 52.720 44.501 99.064 1.00 52.79 O
ATOM 4 OP2 C A 9 53.737 43.223 97.091 1.00 52.26 O
ATOM 5 O5' C A 9 54.072 42.445 99.423 1.00 51.72 O
ATOM 6 C5' C A 9 53.720 42.239 100.803 1.00 51.48 C
ATOM 7 C4' C A 9 54.754 41.372 101.495 1.00 51.14 C
ATOM 8 O4' C A 9 54.886 40.113 100.775 1.00 51.12 O
ATOM 9 C3' C A 9 56.168 41.934 101.624 1.00 49.64 C
ATOM 10 O3' C A 9 56.747 41.439 102.818 1.00 50.21 O
ATOM 11 C2' C A 9 56.892 41.286 100.456 1.00 49.47 C
ATOM 12 O2' C A 9 58.274 41.162 100.705 1.00 49.24 O
ATOM 13 C1' C A 9 56.238 39.907 100.428 1.00 50.08 C
ATOM 14 N1 C A 9 56.289 39.258 99.110 1.00 50.11 N
ATOM 15 C2 C A 9 57.098 38.123 98.941 1.00 51.03 C
ATOM 16 O2 C A 9 57.709 37.660 99.920 1.00 51.89 O
ATOM 17 N3 C A 9 57.187 37.557 97.719 1.00 51.03 N
ATOM 18 C4 C A 9 56.495 38.066 96.697 1.00 51.30 C
ATOM 19 N4 C A 9 56.624 37.484 95.503 1.00 53.01 N
ATOM 20 C5 C A 9 55.643 39.198 96.850 1.00 51.19 C
ATOM 21 C6 C A 9 55.571 39.756 98.059 1.00 49.67 C
ATOM 22 P A A 10 56.917 42.404 104.081 1.00 51.84 P
ATOM 23 OP1 A A 10 55.642 43.122 104.319 1.00 51.63 O
ATOM 24 OP2 A A 10 58.161 43.171 103.861 1.00 51.68 O
ATOM 25 O5' A A 10 57.149 41.400 105.295 1.00 53.06 O
TER
ATOM 1 O3' G B 7 52.141 38.522 93.386 1.00 51.87 O
ATOM 2 P C B 8 53.106 39.668 93.958 1.00 52.75 P
ATOM 3 OP1 C B 8 52.833 40.890 93.156 1.00 54.38 O
ATOM 4 OP2 C B 8 54.486 39.135 94.029 1.00 51.80 O
ATOM 5 O5' C B 8 52.576 39.897 95.443 1.00 51.04 O
ATOM 6 C5' C B 8 51.318 40.552 95.673 1.00 49.99 C
ATOM 7 C4' C B 8 50.895 40.403 97.115 1.00 50.28 C
ATOM 8 O4' C B 8 50.772 38.993 97.436 1.00 49.10 O
ATOM 9 C3' C B 8 51.849 40.915 98.181 1.00 49.82 C
ATOM 10 O3' C B 8 51.757 42.325 98.361 1.00 50.30 O
ATOM 11 C2' C B 8 51.345 40.179 99.416 1.00 49.47 C
ATOM 12 O2' C B 8 50.205 40.779 99.990 1.00 48.71 O
ATOM 13 C1' C B 8 50.964 38.816 98.828 1.00 49.22 C
ATOM 14 N1 C B 8 52.006 37.803 99.045 1.00 49.98 N
ATOM 15 C2 C B 8 52.064 37.160 100.289 1.00 50.36 C
ATOM 16 O2 C B 8 51.198 37.416 101.139 1.00 51.59 O
ATOM 17 N3 C B 8 53.053 36.278 100.532 1.00 49.60 N
ATOM 18 C4 C B 8 53.955 36.014 99.588 1.00 50.22 C
ATOM 19 N4 C B 8 54.929 35.148 99.882 1.00 49.78 N
ATOM 20 C5 C B 8 53.901 36.626 98.301 1.00 50.57 C
ATOM 21 C6 C B 8 52.919 37.504 98.073 1.00 50.10 C
ATOM 22 P C B 9 53.096 43.217 98.428 1.00 51.57 P
ATOM 23 OP1 C B 9 52.720 44.501 99.064 1.00 52.79 O
ATOM 24 OP2 C B 9 53.737 43.223 97.091 1.00 52.26 O
ATOM 25 O5' C B 9 54.072 42.445 99.423 1.00 51.72 O
TER
Atoms:
C2: (57.098,38.123,98.941)
OP1: (52.720,44.501,99.064)
OP2: (53.737,43.223,97.091)
C4: (56.495,38.066,96.697)
O5': (54.072,42.445,99.423)
C3': (56.168,41.934,101.624)
C1': (56.238,39.907,100.428)
O4': (54.886,40.113,100.775)
C5': (53.720,42.239,100.803)
P: (53.096,43.217,98.428)
O2: (57.709,37.660,99.920)
C4': (54.754,41.372,101.495)
C2': (56.892,41.286,100.456)
O2': (58.274,41.162,100.705)
N1: (56.289,39.258,99.110)
N3: (57.187,37.557,97.719)
N4: (56.624,37.484,95.503)
C6: (55.571,39.756,98.059)
C5: (55.643,39.198,96.850)
O3': (56.747,41.439,102.818)
OP1: (52.720,44.501,99.064)
OP2: (53.737,43.223,97.091)
C4: (56.495,38.066,96.697)
O5': (54.072,42.445,99.423)
C3': (56.168,41.934,101.624)
C1': (56.238,39.907,100.428)
O4': (54.886,40.113,100.775)
C5': (53.720,42.239,100.803)
P: (53.096,43.217,98.428)
O2: (57.709,37.660,99.920)
C4': (54.754,41.372,101.495)
C2': (56.892,41.286,100.456)
O2': (58.274,41.162,100.705)
N1: (56.289,39.258,99.110)
N3: (57.187,37.557,97.719)
N4: (56.624,37.484,95.503)
C6: (55.571,39.756,98.059)
C5: (55.643,39.198,96.850)
O3': (56.747,41.439,102.818)
C2: (52.064,37.160,100.289)
OP1: (52.833,40.890,93.156)
OP2: (54.486,39.135,94.029)
C4: (53.955,36.014,99.588)
O5': (52.576,39.897,95.443)
C3': (51.849,40.915,98.181)
C1': (50.964,38.816,98.828)
O4': (50.772,38.993,97.436)
C5': (51.318,40.552,95.673)
P: (53.106,39.668,93.958)
O2: (51.198,37.416,101.139)
C4': (50.895,40.403,97.115)
C2': (51.345,40.179,99.416)
O2': (50.205,40.779,99.990)
N1: (52.006,37.803,99.045)
N3: (53.053,36.278,100.532)
N4: (54.929,35.148,99.882)
C6: (52.919,37.504,98.073)
C5: (53.901,36.626,98.301)
O3': (51.757,42.325,98.361)
OP1: (52.833,40.890,93.156)
OP2: (54.486,39.135,94.029)
C4: (53.955,36.014,99.588)
O5': (52.576,39.897,95.443)
C3': (51.849,40.915,98.181)
C1': (50.964,38.816,98.828)
O4': (50.772,38.993,97.436)
C5': (51.318,40.552,95.673)
P: (53.106,39.668,93.958)
O2: (51.198,37.416,101.139)
C4': (50.895,40.403,97.115)
C2': (51.345,40.179,99.416)
O2': (50.205,40.779,99.990)
N1: (52.006,37.803,99.045)
N3: (53.053,36.278,100.532)
N4: (54.929,35.148,99.882)
C6: (52.919,37.504,98.073)
C5: (53.901,36.626,98.301)
O3': (51.757,42.325,98.361)
Image (generated by PyMOL):