Doublet info:
Details
Nucleotide types:
UC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1DDY:A14:A28
Extra
PDB:
ATOM 1 O3' A A 13 16.348 -13.129 7.200 1.00 22.18 O
ATOM 2 P U A 14 17.031 -14.542 6.880 1.00 25.57 P
ATOM 3 OP1 U A 14 16.661 -14.965 5.496 1.00 23.28 O
ATOM 4 OP2 U A 14 16.709 -15.425 8.029 1.00 22.93 O
ATOM 5 O5' U A 14 18.589 -14.193 6.891 1.00 26.02 O
ATOM 6 C5' U A 14 19.218 -13.638 5.737 1.00 24.82 C
ATOM 7 C4' U A 14 20.717 -13.479 5.942 1.00 25.32 C
ATOM 8 O4' U A 14 21.019 -12.322 6.771 1.00 24.38 O
ATOM 9 C3' U A 14 21.451 -14.648 6.592 1.00 24.80 C
ATOM 10 O3' U A 14 22.706 -14.790 5.951 1.00 27.27 O
ATOM 11 C2' U A 14 21.789 -14.101 7.970 1.00 23.18 C
ATOM 12 O2' U A 14 22.959 -14.693 8.467 1.00 23.54 O
ATOM 13 C1' U A 14 22.090 -12.655 7.612 1.00 22.43 C
ATOM 14 N1 U A 14 22.144 -11.692 8.716 1.00 21.78 N
ATOM 15 C2 U A 14 22.630 -10.439 8.426 1.00 24.65 C
ATOM 16 O2 U A 14 22.992 -10.120 7.307 1.00 30.18 O
ATOM 17 N3 U A 14 22.669 -9.567 9.484 1.00 23.28 N
ATOM 18 C4 U A 14 22.264 -9.814 10.778 1.00 21.91 C
ATOM 19 O4 U A 14 22.276 -8.899 11.607 1.00 18.35 O
ATOM 20 C5 U A 14 21.777 -11.142 11.000 1.00 21.87 C
ATOM 21 C6 U A 14 21.735 -12.013 9.982 1.00 21.03 C
ATOM 22 P A A 15 22.802 -15.544 4.537 1.00 31.92 P
ATOM 23 OP1 A A 15 21.426 -15.912 4.091 1.00 29.91 O
ATOM 24 OP2 A A 15 23.838 -16.605 4.668 1.00 31.19 O
ATOM 25 O5' A A 15 23.361 -14.414 3.556 1.00 34.06 O
TER
ATOM 1 O3' G B 27 26.153 -0.116 16.435 1.00 30.93 O
ATOM 2 P C B 28 24.817 0.454 15.765 1.00 30.85 P
ATOM 3 OP1 C B 28 24.818 1.915 16.045 1.00 29.97 O
ATOM 4 OP2 C B 28 23.675 -0.382 16.216 1.00 32.87 O
ATOM 5 O5' C B 28 25.055 0.191 14.216 1.00 25.08 O
ATOM 6 C5' C B 28 26.099 0.871 13.547 1.00 25.81 C
ATOM 7 C4' C B 28 26.189 0.418 12.120 1.00 26.26 C
ATOM 8 O4' C B 28 26.690 -0.936 12.061 1.00 25.30 O
ATOM 9 C3' C B 28 24.873 0.346 11.370 1.00 26.92 C
ATOM 10 O3' C B 28 24.425 1.611 10.914 1.00 29.40 O
ATOM 11 C2' C B 28 25.221 -0.570 10.211 1.00 26.13 C
ATOM 12 O2' C B 28 25.812 0.124 9.133 1.00 25.60 O
ATOM 13 C1' C B 28 26.202 -1.546 10.882 1.00 25.25 C
ATOM 14 N1 C B 28 25.519 -2.781 11.252 1.00 26.04 N
ATOM 15 C2 C B 28 25.457 -3.809 10.304 1.00 28.40 C
ATOM 16 O2 C B 28 26.042 -3.659 9.215 1.00 27.82 O
ATOM 17 N3 C B 28 24.766 -4.931 10.591 1.00 28.88 N
ATOM 18 C4 C B 28 24.150 -5.048 11.764 1.00 27.49 C
ATOM 19 N4 C B 28 23.441 -6.153 11.972 1.00 31.03 N
ATOM 20 C5 C B 28 24.226 -4.029 12.768 1.00 25.29 C
ATOM 21 C6 C B 28 24.920 -2.925 12.473 1.00 24.84 C
ATOM 22 P G B 29 22.947 1.750 10.303 1.00 32.96 P
ATOM 23 OP1 G B 29 22.945 1.058 8.975 1.00 31.12 O
ATOM 24 OP2 G B 29 22.577 3.182 10.392 1.00 33.28 O
ATOM 25 O5' G B 29 22.031 0.934 11.324 1.00 31.33 O
TER
ATOM 2 P U A 14 17.031 -14.542 6.880 1.00 25.57 P
ATOM 3 OP1 U A 14 16.661 -14.965 5.496 1.00 23.28 O
ATOM 4 OP2 U A 14 16.709 -15.425 8.029 1.00 22.93 O
ATOM 5 O5' U A 14 18.589 -14.193 6.891 1.00 26.02 O
ATOM 6 C5' U A 14 19.218 -13.638 5.737 1.00 24.82 C
ATOM 7 C4' U A 14 20.717 -13.479 5.942 1.00 25.32 C
ATOM 8 O4' U A 14 21.019 -12.322 6.771 1.00 24.38 O
ATOM 9 C3' U A 14 21.451 -14.648 6.592 1.00 24.80 C
ATOM 10 O3' U A 14 22.706 -14.790 5.951 1.00 27.27 O
ATOM 11 C2' U A 14 21.789 -14.101 7.970 1.00 23.18 C
ATOM 12 O2' U A 14 22.959 -14.693 8.467 1.00 23.54 O
ATOM 13 C1' U A 14 22.090 -12.655 7.612 1.00 22.43 C
ATOM 14 N1 U A 14 22.144 -11.692 8.716 1.00 21.78 N
ATOM 15 C2 U A 14 22.630 -10.439 8.426 1.00 24.65 C
ATOM 16 O2 U A 14 22.992 -10.120 7.307 1.00 30.18 O
ATOM 17 N3 U A 14 22.669 -9.567 9.484 1.00 23.28 N
ATOM 18 C4 U A 14 22.264 -9.814 10.778 1.00 21.91 C
ATOM 19 O4 U A 14 22.276 -8.899 11.607 1.00 18.35 O
ATOM 20 C5 U A 14 21.777 -11.142 11.000 1.00 21.87 C
ATOM 21 C6 U A 14 21.735 -12.013 9.982 1.00 21.03 C
ATOM 22 P A A 15 22.802 -15.544 4.537 1.00 31.92 P
ATOM 23 OP1 A A 15 21.426 -15.912 4.091 1.00 29.91 O
ATOM 24 OP2 A A 15 23.838 -16.605 4.668 1.00 31.19 O
ATOM 25 O5' A A 15 23.361 -14.414 3.556 1.00 34.06 O
TER
ATOM 1 O3' G B 27 26.153 -0.116 16.435 1.00 30.93 O
ATOM 2 P C B 28 24.817 0.454 15.765 1.00 30.85 P
ATOM 3 OP1 C B 28 24.818 1.915 16.045 1.00 29.97 O
ATOM 4 OP2 C B 28 23.675 -0.382 16.216 1.00 32.87 O
ATOM 5 O5' C B 28 25.055 0.191 14.216 1.00 25.08 O
ATOM 6 C5' C B 28 26.099 0.871 13.547 1.00 25.81 C
ATOM 7 C4' C B 28 26.189 0.418 12.120 1.00 26.26 C
ATOM 8 O4' C B 28 26.690 -0.936 12.061 1.00 25.30 O
ATOM 9 C3' C B 28 24.873 0.346 11.370 1.00 26.92 C
ATOM 10 O3' C B 28 24.425 1.611 10.914 1.00 29.40 O
ATOM 11 C2' C B 28 25.221 -0.570 10.211 1.00 26.13 C
ATOM 12 O2' C B 28 25.812 0.124 9.133 1.00 25.60 O
ATOM 13 C1' C B 28 26.202 -1.546 10.882 1.00 25.25 C
ATOM 14 N1 C B 28 25.519 -2.781 11.252 1.00 26.04 N
ATOM 15 C2 C B 28 25.457 -3.809 10.304 1.00 28.40 C
ATOM 16 O2 C B 28 26.042 -3.659 9.215 1.00 27.82 O
ATOM 17 N3 C B 28 24.766 -4.931 10.591 1.00 28.88 N
ATOM 18 C4 C B 28 24.150 -5.048 11.764 1.00 27.49 C
ATOM 19 N4 C B 28 23.441 -6.153 11.972 1.00 31.03 N
ATOM 20 C5 C B 28 24.226 -4.029 12.768 1.00 25.29 C
ATOM 21 C6 C B 28 24.920 -2.925 12.473 1.00 24.84 C
ATOM 22 P G B 29 22.947 1.750 10.303 1.00 32.96 P
ATOM 23 OP1 G B 29 22.945 1.058 8.975 1.00 31.12 O
ATOM 24 OP2 G B 29 22.577 3.182 10.392 1.00 33.28 O
ATOM 25 O5' G B 29 22.031 0.934 11.324 1.00 31.33 O
TER
Atoms:
C4: (22.264,-9.814,10.778)
N3: (22.669,-9.567,9.484)
OP1: (16.661,-14.965,5.496)
OP2: (16.709,-15.425,8.029)
C2: (22.630,-10.439,8.426)
C1': (22.090,-12.655,7.612)
C3': (21.451,-14.648,6.592)
O5': (18.589,-14.193,6.891)
O4': (21.019,-12.322,6.771)
C5': (19.218,-13.638,5.737)
P: (17.031,-14.542,6.880)
C4': (20.717,-13.479,5.942)
C2': (21.789,-14.101,7.970)
O2': (22.959,-14.693,8.467)
N1: (22.144,-11.692,8.716)
O4: (22.276,-8.899,11.607)
O2: (22.992,-10.120,7.307)
C6: (21.735,-12.013,9.982)
C5: (21.777,-11.142,11.000)
O3': (22.706,-14.790,5.951)
N3: (22.669,-9.567,9.484)
OP1: (16.661,-14.965,5.496)
OP2: (16.709,-15.425,8.029)
C2: (22.630,-10.439,8.426)
C1': (22.090,-12.655,7.612)
C3': (21.451,-14.648,6.592)
O5': (18.589,-14.193,6.891)
O4': (21.019,-12.322,6.771)
C5': (19.218,-13.638,5.737)
P: (17.031,-14.542,6.880)
C4': (20.717,-13.479,5.942)
C2': (21.789,-14.101,7.970)
O2': (22.959,-14.693,8.467)
N1: (22.144,-11.692,8.716)
O4: (22.276,-8.899,11.607)
O2: (22.992,-10.120,7.307)
C6: (21.735,-12.013,9.982)
C5: (21.777,-11.142,11.000)
O3': (22.706,-14.790,5.951)
C2: (25.457,-3.809,10.304)
OP1: (24.818,1.915,16.045)
OP2: (23.675,-0.382,16.216)
C4: (24.150,-5.048,11.764)
O5': (25.055,0.191,14.216)
C3': (24.873,0.346,11.370)
C1': (26.202,-1.546,10.882)
O4': (26.690,-0.936,12.061)
C5': (26.099,0.871,13.547)
P: (24.817,0.454,15.765)
O2: (26.042,-3.659,9.215)
C4': (26.189,0.418,12.120)
C2': (25.221,-0.570,10.211)
O2': (25.812,0.124,9.133)
N1: (25.519,-2.781,11.252)
N3: (24.766,-4.931,10.591)
N4: (23.441,-6.153,11.972)
C6: (24.920,-2.925,12.473)
C5: (24.226,-4.029,12.768)
O3': (24.425,1.611,10.914)
OP1: (24.818,1.915,16.045)
OP2: (23.675,-0.382,16.216)
C4: (24.150,-5.048,11.764)
O5': (25.055,0.191,14.216)
C3': (24.873,0.346,11.370)
C1': (26.202,-1.546,10.882)
O4': (26.690,-0.936,12.061)
C5': (26.099,0.871,13.547)
P: (24.817,0.454,15.765)
O2: (26.042,-3.659,9.215)
C4': (26.189,0.418,12.120)
C2': (25.221,-0.570,10.211)
O2': (25.812,0.124,9.133)
N1: (25.519,-2.781,11.252)
N3: (24.766,-4.931,10.591)
N4: (23.441,-6.153,11.972)
C6: (24.920,-2.925,12.473)
C5: (24.226,-4.029,12.768)
O3': (24.425,1.611,10.914)
Image (generated by PyMOL):