Doublet info:
Details
Nucleotide types:
UC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1DDY:E14:E28
Extra
PDB:
ATOM 1 O3' A A 13 -11.191 -15.608 17.268 1.00 17.67 O
ATOM 2 P U A 14 -11.746 -14.153 16.919 1.00 22.87 P
ATOM 3 OP1 U A 14 -10.836 -13.527 15.922 1.00 21.75 O
ATOM 4 OP2 U A 14 -12.001 -13.474 18.213 1.00 24.29 O
ATOM 5 O5' U A 14 -13.146 -14.457 16.211 1.00 22.30 O
ATOM 6 C5' U A 14 -13.199 -15.021 14.901 1.00 18.39 C
ATOM 7 C4' U A 14 -14.610 -14.974 14.351 1.00 18.47 C
ATOM 8 O4' U A 14 -15.450 -15.932 15.052 1.00 20.31 O
ATOM 9 C3' U A 14 -15.336 -13.639 14.474 1.00 17.35 C
ATOM 10 O3' U A 14 -16.222 -13.531 13.380 1.00 16.51 O
ATOM 11 C2' U A 14 -16.247 -13.875 15.670 1.00 18.01 C
ATOM 12 O2' U A 14 -17.364 -13.017 15.650 1.00 20.85 O
ATOM 13 C1' U A 14 -16.671 -15.309 15.381 1.00 17.97 C
ATOM 14 N1 U A 14 -17.324 -16.086 16.446 1.00 17.87 N
ATOM 15 C2 U A 14 -18.039 -17.200 16.055 1.00 19.73 C
ATOM 16 O2 U A 14 -18.186 -17.512 14.879 1.00 21.64 O
ATOM 17 N3 U A 14 -18.582 -17.932 17.080 1.00 19.82 N
ATOM 18 C4 U A 14 -18.497 -17.659 18.428 1.00 17.89 C
ATOM 19 O4 U A 14 -19.037 -18.415 19.235 1.00 18.08 O
ATOM 20 C5 U A 14 -17.770 -16.474 18.750 1.00 16.30 C
ATOM 21 C6 U A 14 -17.222 -15.744 17.771 1.00 16.22 C
ATOM 22 P A A 15 -15.743 -12.849 12.014 1.00 22.00 P
ATOM 23 OP1 A A 15 -14.289 -13.146 11.857 1.00 20.58 O
ATOM 24 OP2 A A 15 -16.216 -11.433 12.025 1.00 19.04 O
ATOM 25 O5' A A 15 -16.559 -13.649 10.893 1.00 20.14 O
TER
ATOM 1 O3' G B 27 -25.494 -26.200 22.820 1.00 10.04 O
ATOM 2 P C B 28 -24.202 -27.110 22.588 1.00 13.61 P
ATOM 3 OP1 C B 28 -24.560 -28.530 22.813 1.00 15.23 O
ATOM 4 OP2 C B 28 -23.133 -26.495 23.406 1.00 14.27 O
ATOM 5 O5' C B 28 -23.863 -26.926 21.036 1.00 13.23 O
ATOM 6 C5' C B 28 -24.562 -27.665 20.034 1.00 12.68 C
ATOM 7 C4' C B 28 -24.039 -27.324 18.654 1.00 14.86 C
ATOM 8 O4' C B 28 -24.236 -25.917 18.369 1.00 16.43 O
ATOM 9 C3' C B 28 -22.548 -27.516 18.441 1.00 16.54 C
ATOM 10 O3' C B 28 -22.228 -28.882 18.250 1.00 19.85 O
ATOM 11 C2' C B 28 -22.274 -26.643 17.216 1.00 16.00 C
ATOM 12 O2' C B 28 -22.576 -27.222 15.962 1.00 16.21 O
ATOM 13 C1' C B 28 -23.243 -25.484 17.452 1.00 15.64 C
ATOM 14 N1 C B 28 -22.579 -24.298 17.990 1.00 15.67 N
ATOM 15 C2 C B 28 -22.074 -23.367 17.093 1.00 17.15 C
ATOM 16 O2 C B 28 -22.173 -23.600 15.879 1.00 21.03 O
ATOM 17 N3 C B 28 -21.485 -22.245 17.558 1.00 16.75 N
ATOM 18 C4 C B 28 -21.377 -22.052 18.869 1.00 16.75 C
ATOM 19 N4 C B 28 -20.797 -20.926 19.289 1.00 16.65 N
ATOM 20 C5 C B 28 -21.861 -23.005 19.811 1.00 16.89 C
ATOM 21 C6 C B 28 -22.456 -24.102 19.332 1.00 14.46 C
ATOM 22 P G B 29 -20.707 -29.369 18.407 1.00 21.45 P
ATOM 23 OP1 G B 29 -20.016 -28.990 17.139 1.00 23.89 O
ATOM 24 OP2 G B 29 -20.715 -30.784 18.852 1.00 24.76 O
ATOM 25 O5' G B 29 -20.113 -28.501 19.603 1.00 17.74 O
TER
ATOM 2 P U A 14 -11.746 -14.153 16.919 1.00 22.87 P
ATOM 3 OP1 U A 14 -10.836 -13.527 15.922 1.00 21.75 O
ATOM 4 OP2 U A 14 -12.001 -13.474 18.213 1.00 24.29 O
ATOM 5 O5' U A 14 -13.146 -14.457 16.211 1.00 22.30 O
ATOM 6 C5' U A 14 -13.199 -15.021 14.901 1.00 18.39 C
ATOM 7 C4' U A 14 -14.610 -14.974 14.351 1.00 18.47 C
ATOM 8 O4' U A 14 -15.450 -15.932 15.052 1.00 20.31 O
ATOM 9 C3' U A 14 -15.336 -13.639 14.474 1.00 17.35 C
ATOM 10 O3' U A 14 -16.222 -13.531 13.380 1.00 16.51 O
ATOM 11 C2' U A 14 -16.247 -13.875 15.670 1.00 18.01 C
ATOM 12 O2' U A 14 -17.364 -13.017 15.650 1.00 20.85 O
ATOM 13 C1' U A 14 -16.671 -15.309 15.381 1.00 17.97 C
ATOM 14 N1 U A 14 -17.324 -16.086 16.446 1.00 17.87 N
ATOM 15 C2 U A 14 -18.039 -17.200 16.055 1.00 19.73 C
ATOM 16 O2 U A 14 -18.186 -17.512 14.879 1.00 21.64 O
ATOM 17 N3 U A 14 -18.582 -17.932 17.080 1.00 19.82 N
ATOM 18 C4 U A 14 -18.497 -17.659 18.428 1.00 17.89 C
ATOM 19 O4 U A 14 -19.037 -18.415 19.235 1.00 18.08 O
ATOM 20 C5 U A 14 -17.770 -16.474 18.750 1.00 16.30 C
ATOM 21 C6 U A 14 -17.222 -15.744 17.771 1.00 16.22 C
ATOM 22 P A A 15 -15.743 -12.849 12.014 1.00 22.00 P
ATOM 23 OP1 A A 15 -14.289 -13.146 11.857 1.00 20.58 O
ATOM 24 OP2 A A 15 -16.216 -11.433 12.025 1.00 19.04 O
ATOM 25 O5' A A 15 -16.559 -13.649 10.893 1.00 20.14 O
TER
ATOM 1 O3' G B 27 -25.494 -26.200 22.820 1.00 10.04 O
ATOM 2 P C B 28 -24.202 -27.110 22.588 1.00 13.61 P
ATOM 3 OP1 C B 28 -24.560 -28.530 22.813 1.00 15.23 O
ATOM 4 OP2 C B 28 -23.133 -26.495 23.406 1.00 14.27 O
ATOM 5 O5' C B 28 -23.863 -26.926 21.036 1.00 13.23 O
ATOM 6 C5' C B 28 -24.562 -27.665 20.034 1.00 12.68 C
ATOM 7 C4' C B 28 -24.039 -27.324 18.654 1.00 14.86 C
ATOM 8 O4' C B 28 -24.236 -25.917 18.369 1.00 16.43 O
ATOM 9 C3' C B 28 -22.548 -27.516 18.441 1.00 16.54 C
ATOM 10 O3' C B 28 -22.228 -28.882 18.250 1.00 19.85 O
ATOM 11 C2' C B 28 -22.274 -26.643 17.216 1.00 16.00 C
ATOM 12 O2' C B 28 -22.576 -27.222 15.962 1.00 16.21 O
ATOM 13 C1' C B 28 -23.243 -25.484 17.452 1.00 15.64 C
ATOM 14 N1 C B 28 -22.579 -24.298 17.990 1.00 15.67 N
ATOM 15 C2 C B 28 -22.074 -23.367 17.093 1.00 17.15 C
ATOM 16 O2 C B 28 -22.173 -23.600 15.879 1.00 21.03 O
ATOM 17 N3 C B 28 -21.485 -22.245 17.558 1.00 16.75 N
ATOM 18 C4 C B 28 -21.377 -22.052 18.869 1.00 16.75 C
ATOM 19 N4 C B 28 -20.797 -20.926 19.289 1.00 16.65 N
ATOM 20 C5 C B 28 -21.861 -23.005 19.811 1.00 16.89 C
ATOM 21 C6 C B 28 -22.456 -24.102 19.332 1.00 14.46 C
ATOM 22 P G B 29 -20.707 -29.369 18.407 1.00 21.45 P
ATOM 23 OP1 G B 29 -20.016 -28.990 17.139 1.00 23.89 O
ATOM 24 OP2 G B 29 -20.715 -30.784 18.852 1.00 24.76 O
ATOM 25 O5' G B 29 -20.113 -28.501 19.603 1.00 17.74 O
TER
Atoms:
C4: (-18.497,-17.659,18.428)
N3: (-18.582,-17.932,17.080)
OP1: (-10.836,-13.527,15.922)
OP2: (-12.001,-13.474,18.213)
C2: (-18.039,-17.200,16.055)
C1': (-16.671,-15.309,15.381)
C3': (-15.336,-13.639,14.474)
O5': (-13.146,-14.457,16.211)
O4': (-15.450,-15.932,15.052)
C5': (-13.199,-15.021,14.901)
P: (-11.746,-14.153,16.919)
C4': (-14.610,-14.974,14.351)
C2': (-16.247,-13.875,15.670)
O2': (-17.364,-13.017,15.650)
N1: (-17.324,-16.086,16.446)
O4: (-19.037,-18.415,19.235)
O2: (-18.186,-17.512,14.879)
C6: (-17.222,-15.744,17.771)
C5: (-17.770,-16.474,18.750)
O3': (-16.222,-13.531,13.380)
N3: (-18.582,-17.932,17.080)
OP1: (-10.836,-13.527,15.922)
OP2: (-12.001,-13.474,18.213)
C2: (-18.039,-17.200,16.055)
C1': (-16.671,-15.309,15.381)
C3': (-15.336,-13.639,14.474)
O5': (-13.146,-14.457,16.211)
O4': (-15.450,-15.932,15.052)
C5': (-13.199,-15.021,14.901)
P: (-11.746,-14.153,16.919)
C4': (-14.610,-14.974,14.351)
C2': (-16.247,-13.875,15.670)
O2': (-17.364,-13.017,15.650)
N1: (-17.324,-16.086,16.446)
O4: (-19.037,-18.415,19.235)
O2: (-18.186,-17.512,14.879)
C6: (-17.222,-15.744,17.771)
C5: (-17.770,-16.474,18.750)
O3': (-16.222,-13.531,13.380)
C2: (-22.074,-23.367,17.093)
OP1: (-24.560,-28.530,22.813)
OP2: (-23.133,-26.495,23.406)
C4: (-21.377,-22.052,18.869)
O5': (-23.863,-26.926,21.036)
C3': (-22.548,-27.516,18.441)
C1': (-23.243,-25.484,17.452)
O4': (-24.236,-25.917,18.369)
C5': (-24.562,-27.665,20.034)
P: (-24.202,-27.110,22.588)
O2: (-22.173,-23.600,15.879)
C4': (-24.039,-27.324,18.654)
C2': (-22.274,-26.643,17.216)
O2': (-22.576,-27.222,15.962)
N1: (-22.579,-24.298,17.990)
N3: (-21.485,-22.245,17.558)
N4: (-20.797,-20.926,19.289)
C6: (-22.456,-24.102,19.332)
C5: (-21.861,-23.005,19.811)
O3': (-22.228,-28.882,18.250)
OP1: (-24.560,-28.530,22.813)
OP2: (-23.133,-26.495,23.406)
C4: (-21.377,-22.052,18.869)
O5': (-23.863,-26.926,21.036)
C3': (-22.548,-27.516,18.441)
C1': (-23.243,-25.484,17.452)
O4': (-24.236,-25.917,18.369)
C5': (-24.562,-27.665,20.034)
P: (-24.202,-27.110,22.588)
O2: (-22.173,-23.600,15.879)
C4': (-24.039,-27.324,18.654)
C2': (-22.274,-26.643,17.216)
O2': (-22.576,-27.222,15.962)
N1: (-22.579,-24.298,17.990)
N3: (-21.485,-22.245,17.558)
N4: (-20.797,-20.926,19.289)
C6: (-22.456,-24.102,19.332)
C5: (-21.861,-23.005,19.811)
O3': (-22.228,-28.882,18.250)
Image (generated by PyMOL):