Doublet info:
Details
Nucleotide types:
UC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:353:325
Extra
PDB:
ATOM 1 O3' U A 52 5.879 -93.776 8.984 1.00 81.21 O
ATOM 2 P U A 53 6.810 -94.035 7.700 1.00 94.80 P
ATOM 3 OP1 U A 53 6.046 -93.571 6.515 1.00 95.52 O
ATOM 4 OP2 U A 53 7.246 -95.453 7.762 1.00 95.47 O
ATOM 5 O5' U A 53 8.052 -93.059 7.957 1.00 93.80 O
ATOM 6 C5' U A 53 8.202 -91.828 7.228 1.00 93.57 C
ATOM 7 C4' U A 53 8.269 -90.597 8.141 1.00 92.26 C
ATOM 8 O4' U A 53 8.575 -91.001 9.511 1.00 91.49 O
ATOM 9 C3' U A 53 9.326 -89.548 7.759 1.00 91.72 C
ATOM 10 O3' U A 53 8.861 -88.235 8.071 1.00 90.91 O
ATOM 11 C2' U A 53 10.468 -89.888 8.696 1.00 91.03 C
ATOM 12 O2' U A 53 11.369 -88.819 8.932 1.00 90.11 O
ATOM 13 C1' U A 53 9.705 -90.287 9.963 1.00 90.55 C
ATOM 14 N1 U A 53 10.478 -91.161 10.867 1.00 90.25 N
ATOM 15 C2 U A 53 11.325 -90.571 11.809 1.00 89.12 C
ATOM 16 O2 U A 53 11.449 -89.359 11.956 1.00 88.35 O
ATOM 17 N3 U A 53 12.034 -91.459 12.581 1.00 88.94 N
ATOM 18 C4 U A 53 11.976 -92.836 12.506 1.00 89.75 C
ATOM 19 O4 U A 53 12.662 -93.517 13.262 1.00 89.48 O
ATOM 20 C5 U A 53 11.077 -93.358 11.524 1.00 90.89 C
ATOM 21 C6 U A 53 10.377 -92.524 10.749 1.00 91.10 C
ATOM 22 P A A 54 7.616 -87.592 7.295 1.00 86.22 P
ATOM 23 OP1 A A 54 7.317 -88.454 6.149 1.00 87.52 O
ATOM 24 OP2 A A 54 7.929 -86.162 7.047 1.00 85.57 O
ATOM 25 O5' A A 54 6.462 -87.703 8.366 1.00 85.81 O
TER
ATOM 1 O3' G B 24 21.816 -95.106 18.959 1.00 78.81 O
ATOM 2 P C B 25 20.727 -94.780 20.081 1.00 78.81 P
ATOM 3 OP1 C B 25 21.298 -95.219 21.401 1.00 78.09 O
ATOM 4 OP2 C B 25 19.452 -95.353 19.628 1.00 79.67 O
ATOM 5 O5' C B 25 20.650 -93.207 20.036 1.00 78.00 O
ATOM 6 C5' C B 25 19.722 -92.523 20.826 1.00 77.32 C
ATOM 7 C4' C B 25 19.352 -91.205 20.225 1.00 77.07 C
ATOM 8 O4' C B 25 19.532 -91.204 18.779 1.00 77.96 O
ATOM 9 C3' C B 25 17.919 -90.835 20.377 1.00 77.08 C
ATOM 10 O3' C B 25 17.598 -90.488 21.690 1.00 76.14 O
ATOM 11 C2' C B 25 17.788 -89.726 19.368 1.00 77.17 C
ATOM 12 O2' C B 25 18.484 -88.576 19.815 1.00 76.15 O
ATOM 13 C1' C B 25 18.567 -90.346 18.202 1.00 78.08 C
ATOM 14 N1 C B 25 17.682 -91.160 17.362 1.00 79.23 N
ATOM 15 C2 C B 25 16.725 -90.572 16.522 1.00 79.65 C
ATOM 16 O2 C B 25 16.623 -89.341 16.410 1.00 79.10 O
ATOM 17 N3 C B 25 15.918 -91.388 15.824 1.00 80.71 N
ATOM 18 C4 C B 25 16.022 -92.704 15.936 1.00 81.32 C
ATOM 19 N4 C B 25 15.194 -93.456 15.226 1.00 82.37 N
ATOM 20 C5 C B 25 16.963 -93.324 16.777 1.00 80.91 C
ATOM 21 C6 C B 25 17.762 -92.515 17.469 1.00 79.86 C
ATOM 22 P A B 26 16.522 -91.367 22.464 1.00 74.39 P
ATOM 23 OP1 A B 26 16.655 -91.075 23.923 1.00 73.31 O
ATOM 24 OP2 A B 26 16.676 -92.752 21.992 1.00 75.38 O
ATOM 25 O5' A B 26 15.176 -90.750 21.910 1.00 74.71 O
TER
ATOM 2 P U A 53 6.810 -94.035 7.700 1.00 94.80 P
ATOM 3 OP1 U A 53 6.046 -93.571 6.515 1.00 95.52 O
ATOM 4 OP2 U A 53 7.246 -95.453 7.762 1.00 95.47 O
ATOM 5 O5' U A 53 8.052 -93.059 7.957 1.00 93.80 O
ATOM 6 C5' U A 53 8.202 -91.828 7.228 1.00 93.57 C
ATOM 7 C4' U A 53 8.269 -90.597 8.141 1.00 92.26 C
ATOM 8 O4' U A 53 8.575 -91.001 9.511 1.00 91.49 O
ATOM 9 C3' U A 53 9.326 -89.548 7.759 1.00 91.72 C
ATOM 10 O3' U A 53 8.861 -88.235 8.071 1.00 90.91 O
ATOM 11 C2' U A 53 10.468 -89.888 8.696 1.00 91.03 C
ATOM 12 O2' U A 53 11.369 -88.819 8.932 1.00 90.11 O
ATOM 13 C1' U A 53 9.705 -90.287 9.963 1.00 90.55 C
ATOM 14 N1 U A 53 10.478 -91.161 10.867 1.00 90.25 N
ATOM 15 C2 U A 53 11.325 -90.571 11.809 1.00 89.12 C
ATOM 16 O2 U A 53 11.449 -89.359 11.956 1.00 88.35 O
ATOM 17 N3 U A 53 12.034 -91.459 12.581 1.00 88.94 N
ATOM 18 C4 U A 53 11.976 -92.836 12.506 1.00 89.75 C
ATOM 19 O4 U A 53 12.662 -93.517 13.262 1.00 89.48 O
ATOM 20 C5 U A 53 11.077 -93.358 11.524 1.00 90.89 C
ATOM 21 C6 U A 53 10.377 -92.524 10.749 1.00 91.10 C
ATOM 22 P A A 54 7.616 -87.592 7.295 1.00 86.22 P
ATOM 23 OP1 A A 54 7.317 -88.454 6.149 1.00 87.52 O
ATOM 24 OP2 A A 54 7.929 -86.162 7.047 1.00 85.57 O
ATOM 25 O5' A A 54 6.462 -87.703 8.366 1.00 85.81 O
TER
ATOM 1 O3' G B 24 21.816 -95.106 18.959 1.00 78.81 O
ATOM 2 P C B 25 20.727 -94.780 20.081 1.00 78.81 P
ATOM 3 OP1 C B 25 21.298 -95.219 21.401 1.00 78.09 O
ATOM 4 OP2 C B 25 19.452 -95.353 19.628 1.00 79.67 O
ATOM 5 O5' C B 25 20.650 -93.207 20.036 1.00 78.00 O
ATOM 6 C5' C B 25 19.722 -92.523 20.826 1.00 77.32 C
ATOM 7 C4' C B 25 19.352 -91.205 20.225 1.00 77.07 C
ATOM 8 O4' C B 25 19.532 -91.204 18.779 1.00 77.96 O
ATOM 9 C3' C B 25 17.919 -90.835 20.377 1.00 77.08 C
ATOM 10 O3' C B 25 17.598 -90.488 21.690 1.00 76.14 O
ATOM 11 C2' C B 25 17.788 -89.726 19.368 1.00 77.17 C
ATOM 12 O2' C B 25 18.484 -88.576 19.815 1.00 76.15 O
ATOM 13 C1' C B 25 18.567 -90.346 18.202 1.00 78.08 C
ATOM 14 N1 C B 25 17.682 -91.160 17.362 1.00 79.23 N
ATOM 15 C2 C B 25 16.725 -90.572 16.522 1.00 79.65 C
ATOM 16 O2 C B 25 16.623 -89.341 16.410 1.00 79.10 O
ATOM 17 N3 C B 25 15.918 -91.388 15.824 1.00 80.71 N
ATOM 18 C4 C B 25 16.022 -92.704 15.936 1.00 81.32 C
ATOM 19 N4 C B 25 15.194 -93.456 15.226 1.00 82.37 N
ATOM 20 C5 C B 25 16.963 -93.324 16.777 1.00 80.91 C
ATOM 21 C6 C B 25 17.762 -92.515 17.469 1.00 79.86 C
ATOM 22 P A B 26 16.522 -91.367 22.464 1.00 74.39 P
ATOM 23 OP1 A B 26 16.655 -91.075 23.923 1.00 73.31 O
ATOM 24 OP2 A B 26 16.676 -92.752 21.992 1.00 75.38 O
ATOM 25 O5' A B 26 15.176 -90.750 21.910 1.00 74.71 O
TER
Atoms:
C4: (11.976,-92.836,12.506)
N3: (12.034,-91.459,12.581)
OP1: (6.046,-93.571,6.515)
OP2: (7.246,-95.453,7.762)
C2: (11.325,-90.571,11.809)
C1': (9.705,-90.287,9.963)
C3': (9.326,-89.548,7.759)
O5': (8.052,-93.059,7.957)
O4': (8.575,-91.001,9.511)
C5': (8.202,-91.828,7.228)
P: (6.810,-94.035,7.700)
C4': (8.269,-90.597,8.141)
C2': (10.468,-89.888,8.696)
O2': (11.369,-88.819,8.932)
N1: (10.478,-91.161,10.867)
O4: (12.662,-93.517,13.262)
O2: (11.449,-89.359,11.956)
C6: (10.377,-92.524,10.749)
C5: (11.077,-93.358,11.524)
O3': (8.861,-88.235,8.071)
N3: (12.034,-91.459,12.581)
OP1: (6.046,-93.571,6.515)
OP2: (7.246,-95.453,7.762)
C2: (11.325,-90.571,11.809)
C1': (9.705,-90.287,9.963)
C3': (9.326,-89.548,7.759)
O5': (8.052,-93.059,7.957)
O4': (8.575,-91.001,9.511)
C5': (8.202,-91.828,7.228)
P: (6.810,-94.035,7.700)
C4': (8.269,-90.597,8.141)
C2': (10.468,-89.888,8.696)
O2': (11.369,-88.819,8.932)
N1: (10.478,-91.161,10.867)
O4: (12.662,-93.517,13.262)
O2: (11.449,-89.359,11.956)
C6: (10.377,-92.524,10.749)
C5: (11.077,-93.358,11.524)
O3': (8.861,-88.235,8.071)
C2: (16.725,-90.572,16.522)
OP1: (21.298,-95.219,21.401)
OP2: (19.452,-95.353,19.628)
C4: (16.022,-92.704,15.936)
O5': (20.650,-93.207,20.036)
C3': (17.919,-90.835,20.377)
C1': (18.567,-90.346,18.202)
O4': (19.532,-91.204,18.779)
C5': (19.722,-92.523,20.826)
P: (20.727,-94.780,20.081)
O2: (16.623,-89.341,16.410)
C4': (19.352,-91.205,20.225)
C2': (17.788,-89.726,19.368)
O2': (18.484,-88.576,19.815)
N1: (17.682,-91.160,17.362)
N3: (15.918,-91.388,15.824)
N4: (15.194,-93.456,15.226)
C6: (17.762,-92.515,17.469)
C5: (16.963,-93.324,16.777)
O3': (17.598,-90.488,21.690)
OP1: (21.298,-95.219,21.401)
OP2: (19.452,-95.353,19.628)
C4: (16.022,-92.704,15.936)
O5': (20.650,-93.207,20.036)
C3': (17.919,-90.835,20.377)
C1': (18.567,-90.346,18.202)
O4': (19.532,-91.204,18.779)
C5': (19.722,-92.523,20.826)
P: (20.727,-94.780,20.081)
O2: (16.623,-89.341,16.410)
C4': (19.352,-91.205,20.225)
C2': (17.788,-89.726,19.368)
O2': (18.484,-88.576,19.815)
N1: (17.682,-91.160,17.362)
N3: (15.918,-91.388,15.824)
N4: (15.194,-93.456,15.226)
C6: (17.762,-92.515,17.469)
C5: (16.963,-93.324,16.777)
O3': (17.598,-90.488,21.690)
Image (generated by PyMOL):