Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3OIJ:D9:D8
Extra
PDB:
ATOM 1 O3' A A 8 47.509 -12.168 2.741 1.00 52.13 O
ATOM 2 P C A 9 46.710 -13.095 1.697 1.00 73.32 P
ATOM 3 OP1 C A 9 47.212 -14.480 1.790 1.00 54.09 O
ATOM 4 OP2 C A 9 46.863 -12.358 0.421 1.00 59.38 O
ATOM 5 O5' C A 9 45.201 -13.060 2.233 1.00 61.95 O
ATOM 6 C5' C A 9 44.841 -13.326 3.586 1.00 50.87 C
ATOM 7 C4' C A 9 43.394 -12.995 3.844 1.00 59.74 C
ATOM 8 O4' C A 9 43.200 -11.555 3.890 1.00 60.37 O
ATOM 9 C3' C A 9 42.422 -13.495 2.784 1.00 59.28 C
ATOM 10 O3' C A 9 42.013 -14.826 3.039 1.00 58.90 O
ATOM 11 C2' C A 9 41.266 -12.504 2.848 1.00 58.34 C
ATOM 12 O2' C A 9 40.356 -12.878 3.873 1.00 55.94 O
ATOM 13 C1' C A 9 41.970 -11.217 3.276 1.00 57.04 C
ATOM 14 N1 C A 9 42.278 -10.208 2.242 1.00 58.22 N
ATOM 15 C2 C A 9 41.339 -9.208 1.960 1.00 56.92 C
ATOM 16 O2 C A 9 40.249 -9.218 2.535 1.00 62.61 O
ATOM 17 N3 C A 9 41.624 -8.252 1.056 1.00 52.49 N
ATOM 18 C4 C A 9 42.808 -8.265 0.456 1.00 58.33 C
ATOM 19 N4 C A 9 43.033 -7.301 -0.427 1.00 46.87 N
ATOM 20 C5 C A 9 43.798 -9.265 0.719 1.00 62.80 C
ATOM 21 C6 C A 9 43.499 -10.207 1.621 1.00 61.57 C
ATOM 22 P G A 10 41.727 -15.877 1.855 1.00 79.62 P
ATOM 23 OP1 G A 10 41.222 -17.101 2.554 1.00 71.90 O
ATOM 24 OP2 G A 10 42.995 -15.886 1.071 1.00 62.94 O
ATOM 25 O5' G A 10 40.556 -15.239 0.976 1.00 59.50 O
TER
ATOM 1 O3' A B 7 47.826 -6.364 0.715 1.00 60.54 O
ATOM 2 P A B 8 47.488 -7.542 -0.298 1.00 67.32 P
ATOM 3 OP1 A B 8 48.741 -7.713 -1.085 1.00 62.11 O
ATOM 4 OP2 A B 8 46.227 -7.143 -0.975 1.00 69.49 O
ATOM 5 O5' A B 8 47.259 -8.777 0.681 1.00 58.70 O
ATOM 6 C5' A B 8 48.385 -9.499 1.160 1.00 55.82 C
ATOM 7 C4' A B 8 48.259 -9.851 2.618 1.00 53.29 C
ATOM 8 O4' A B 8 47.961 -8.657 3.392 1.00 62.54 O
ATOM 9 C3' A B 8 47.144 -10.819 2.968 1.00 53.94 C
ATOM 10 O3' A B 8 47.509 -12.168 2.741 1.00 52.13 O
ATOM 11 C2' A B 8 46.869 -10.495 4.434 1.00 61.85 C
ATOM 12 O2' A B 8 47.837 -11.102 5.283 1.00 50.86 O
ATOM 13 C1' A B 8 47.096 -8.979 4.462 1.00 65.42 C
ATOM 14 N9 A B 8 45.846 -8.208 4.305 1.00 61.53 N
ATOM 15 C8 A B 8 44.977 -8.225 3.247 1.00 63.30 C
ATOM 16 N7 A B 8 43.946 -7.427 3.377 1.00 57.65 N
ATOM 17 C5 A B 8 44.143 -6.842 4.616 1.00 57.28 C
ATOM 18 C6 A B 8 43.404 -5.890 5.343 1.00 59.21 C
ATOM 19 N6 A B 8 42.268 -5.348 4.906 1.00 55.82 N
ATOM 20 N1 A B 8 43.877 -5.505 6.549 1.00 58.89 N
ATOM 21 C2 A B 8 45.021 -6.043 6.981 1.00 57.66 C
ATOM 22 N3 A B 8 45.806 -6.945 6.388 1.00 61.50 N
ATOM 23 C4 A B 8 45.308 -7.312 5.196 1.00 57.65 C
ATOM 24 P C B 9 46.710 -13.095 1.697 1.00 73.32 P
ATOM 25 OP1 C B 9 47.212 -14.480 1.790 1.00 54.09 O
ATOM 26 OP2 C B 9 46.863 -12.358 0.421 1.00 59.38 O
ATOM 27 O5' C B 9 45.201 -13.060 2.233 1.00 61.95 O
TER
ATOM 2 P C A 9 46.710 -13.095 1.697 1.00 73.32 P
ATOM 3 OP1 C A 9 47.212 -14.480 1.790 1.00 54.09 O
ATOM 4 OP2 C A 9 46.863 -12.358 0.421 1.00 59.38 O
ATOM 5 O5' C A 9 45.201 -13.060 2.233 1.00 61.95 O
ATOM 6 C5' C A 9 44.841 -13.326 3.586 1.00 50.87 C
ATOM 7 C4' C A 9 43.394 -12.995 3.844 1.00 59.74 C
ATOM 8 O4' C A 9 43.200 -11.555 3.890 1.00 60.37 O
ATOM 9 C3' C A 9 42.422 -13.495 2.784 1.00 59.28 C
ATOM 10 O3' C A 9 42.013 -14.826 3.039 1.00 58.90 O
ATOM 11 C2' C A 9 41.266 -12.504 2.848 1.00 58.34 C
ATOM 12 O2' C A 9 40.356 -12.878 3.873 1.00 55.94 O
ATOM 13 C1' C A 9 41.970 -11.217 3.276 1.00 57.04 C
ATOM 14 N1 C A 9 42.278 -10.208 2.242 1.00 58.22 N
ATOM 15 C2 C A 9 41.339 -9.208 1.960 1.00 56.92 C
ATOM 16 O2 C A 9 40.249 -9.218 2.535 1.00 62.61 O
ATOM 17 N3 C A 9 41.624 -8.252 1.056 1.00 52.49 N
ATOM 18 C4 C A 9 42.808 -8.265 0.456 1.00 58.33 C
ATOM 19 N4 C A 9 43.033 -7.301 -0.427 1.00 46.87 N
ATOM 20 C5 C A 9 43.798 -9.265 0.719 1.00 62.80 C
ATOM 21 C6 C A 9 43.499 -10.207 1.621 1.00 61.57 C
ATOM 22 P G A 10 41.727 -15.877 1.855 1.00 79.62 P
ATOM 23 OP1 G A 10 41.222 -17.101 2.554 1.00 71.90 O
ATOM 24 OP2 G A 10 42.995 -15.886 1.071 1.00 62.94 O
ATOM 25 O5' G A 10 40.556 -15.239 0.976 1.00 59.50 O
TER
ATOM 1 O3' A B 7 47.826 -6.364 0.715 1.00 60.54 O
ATOM 2 P A B 8 47.488 -7.542 -0.298 1.00 67.32 P
ATOM 3 OP1 A B 8 48.741 -7.713 -1.085 1.00 62.11 O
ATOM 4 OP2 A B 8 46.227 -7.143 -0.975 1.00 69.49 O
ATOM 5 O5' A B 8 47.259 -8.777 0.681 1.00 58.70 O
ATOM 6 C5' A B 8 48.385 -9.499 1.160 1.00 55.82 C
ATOM 7 C4' A B 8 48.259 -9.851 2.618 1.00 53.29 C
ATOM 8 O4' A B 8 47.961 -8.657 3.392 1.00 62.54 O
ATOM 9 C3' A B 8 47.144 -10.819 2.968 1.00 53.94 C
ATOM 10 O3' A B 8 47.509 -12.168 2.741 1.00 52.13 O
ATOM 11 C2' A B 8 46.869 -10.495 4.434 1.00 61.85 C
ATOM 12 O2' A B 8 47.837 -11.102 5.283 1.00 50.86 O
ATOM 13 C1' A B 8 47.096 -8.979 4.462 1.00 65.42 C
ATOM 14 N9 A B 8 45.846 -8.208 4.305 1.00 61.53 N
ATOM 15 C8 A B 8 44.977 -8.225 3.247 1.00 63.30 C
ATOM 16 N7 A B 8 43.946 -7.427 3.377 1.00 57.65 N
ATOM 17 C5 A B 8 44.143 -6.842 4.616 1.00 57.28 C
ATOM 18 C6 A B 8 43.404 -5.890 5.343 1.00 59.21 C
ATOM 19 N6 A B 8 42.268 -5.348 4.906 1.00 55.82 N
ATOM 20 N1 A B 8 43.877 -5.505 6.549 1.00 58.89 N
ATOM 21 C2 A B 8 45.021 -6.043 6.981 1.00 57.66 C
ATOM 22 N3 A B 8 45.806 -6.945 6.388 1.00 61.50 N
ATOM 23 C4 A B 8 45.308 -7.312 5.196 1.00 57.65 C
ATOM 24 P C B 9 46.710 -13.095 1.697 1.00 73.32 P
ATOM 25 OP1 C B 9 47.212 -14.480 1.790 1.00 54.09 O
ATOM 26 OP2 C B 9 46.863 -12.358 0.421 1.00 59.38 O
ATOM 27 O5' C B 9 45.201 -13.060 2.233 1.00 61.95 O
TER
Atoms:
C2: (41.339,-9.208,1.960)
OP1: (47.212,-14.480,1.790)
OP2: (46.863,-12.358,0.421)
C4: (42.808,-8.265,0.456)
O5': (45.201,-13.060,2.233)
C3': (42.422,-13.495,2.784)
C1': (41.970,-11.217,3.276)
O4': (43.200,-11.555,3.890)
C5': (44.841,-13.326,3.586)
P: (46.710,-13.095,1.697)
O2: (40.249,-9.218,2.535)
C4': (43.394,-12.995,3.844)
C2': (41.266,-12.504,2.848)
O2': (40.356,-12.878,3.873)
N1: (42.278,-10.208,2.242)
N3: (41.624,-8.252,1.056)
N4: (43.033,-7.301,-0.427)
C6: (43.499,-10.207,1.621)
C5: (43.798,-9.265,0.719)
O3': (42.013,-14.826,3.039)
OP1: (47.212,-14.480,1.790)
OP2: (46.863,-12.358,0.421)
C4: (42.808,-8.265,0.456)
O5': (45.201,-13.060,2.233)
C3': (42.422,-13.495,2.784)
C1': (41.970,-11.217,3.276)
O4': (43.200,-11.555,3.890)
C5': (44.841,-13.326,3.586)
P: (46.710,-13.095,1.697)
O2: (40.249,-9.218,2.535)
C4': (43.394,-12.995,3.844)
C2': (41.266,-12.504,2.848)
O2': (40.356,-12.878,3.873)
N1: (42.278,-10.208,2.242)
N3: (41.624,-8.252,1.056)
N4: (43.033,-7.301,-0.427)
C6: (43.499,-10.207,1.621)
C5: (43.798,-9.265,0.719)
O3': (42.013,-14.826,3.039)
OP1: (48.741,-7.713,-1.085)
OP2: (46.227,-7.143,-0.975)
C3': (47.144,-10.819,2.968)
C1': (47.096,-8.979,4.462)
C5': (48.385,-9.499,1.160)
O4': (47.961,-8.657,3.392)
C8: (44.977,-8.225,3.247)
O2': (47.837,-11.102,5.283)
C6: (43.404,-5.890,5.343)
C5: (44.143,-6.842,4.616)
C4: (45.308,-7.312,5.196)
P: (47.488,-7.542,-0.298)
C4': (48.259,-9.851,2.618)
C2': (46.869,-10.495,4.434)
C2: (45.021,-6.043,6.981)
N1: (43.877,-5.505,6.549)
N3: (45.806,-6.945,6.388)
N6: (42.268,-5.348,4.906)
N7: (43.946,-7.427,3.377)
N9: (45.846,-8.208,4.305)
O5': (47.259,-8.777,0.681)
O3': (47.509,-12.168,2.741)
OP2: (46.227,-7.143,-0.975)
C3': (47.144,-10.819,2.968)
C1': (47.096,-8.979,4.462)
C5': (48.385,-9.499,1.160)
O4': (47.961,-8.657,3.392)
C8: (44.977,-8.225,3.247)
O2': (47.837,-11.102,5.283)
C6: (43.404,-5.890,5.343)
C5: (44.143,-6.842,4.616)
C4: (45.308,-7.312,5.196)
P: (47.488,-7.542,-0.298)
C4': (48.259,-9.851,2.618)
C2': (46.869,-10.495,4.434)
C2: (45.021,-6.043,6.981)
N1: (43.877,-5.505,6.549)
N3: (45.806,-6.945,6.388)
N6: (42.268,-5.348,4.906)
N7: (43.946,-7.427,3.377)
N9: (45.846,-8.208,4.305)
O5': (47.259,-8.777,0.681)
O3': (47.509,-12.168,2.741)
Image (generated by PyMOL):