Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:01042:01041
Extra
PDB:
ATOM 1 O3' A A1041 38.011 95.880 103.131 1.00 34.89 O
ATOM 2 P C A1042 38.707 94.865 104.176 1.00 35.60 P
ATOM 3 OP1 C A1042 40.185 94.883 104.015 1.00 34.74 O
ATOM 4 OP2 C A1042 37.982 93.576 104.032 1.00 36.16 O
ATOM 5 O5' C A1042 38.360 95.458 105.615 1.00 35.38 O
ATOM 6 C5' C A1042 38.803 94.764 106.811 1.00 37.16 C
ATOM 7 C4' C A1042 37.826 94.959 107.953 1.00 35.07 C
ATOM 8 O4' C A1042 37.843 96.338 108.406 1.00 36.29 O
ATOM 9 C3' C A1042 36.363 94.699 107.656 1.00 34.77 C
ATOM 10 O3' C A1042 36.054 93.317 107.677 1.00 37.41 O
ATOM 11 C2' C A1042 35.684 95.452 108.787 1.00 35.19 C
ATOM 12 O2' C A1042 35.782 94.773 110.020 1.00 33.93 O
ATOM 13 C1' C A1042 36.550 96.707 108.858 1.00 34.98 C
ATOM 14 N1 C A1042 36.035 97.792 107.999 1.00 35.20 N
ATOM 15 C2 C A1042 34.855 98.443 108.380 1.00 35.40 C
ATOM 16 O2 C A1042 34.271 98.080 109.416 1.00 35.88 O
ATOM 17 N3 C A1042 34.381 99.448 107.613 1.00 34.87 N
ATOM 18 C4 C A1042 35.031 99.809 106.506 1.00 33.91 C
ATOM 19 N4 C A1042 34.533 100.819 105.796 1.00 32.37 N
ATOM 20 C5 C A1042 36.223 99.154 106.085 1.00 32.04 C
ATOM 21 C6 C A1042 36.686 98.162 106.854 1.00 33.26 C
ATOM 22 P C A1043 34.778 92.782 106.867 1.00 36.53 P
ATOM 23 OP1 C A1043 34.808 91.301 106.906 1.00 37.15 O
ATOM 24 OP2 C A1043 34.729 93.481 105.562 1.00 37.80 O
ATOM 25 O5' C A1043 33.548 93.285 107.733 1.00 34.26 O
TER
ATOM 1 O3' A B1040 37.775 101.679 101.529 1.00 36.23 O
ATOM 2 P A B1041 37.608 101.297 103.082 1.00 34.55 P
ATOM 3 OP1 A B1041 36.184 101.556 103.408 1.00 36.10 O
ATOM 4 OP2 A B1041 38.671 101.935 103.897 1.00 36.75 O
ATOM 5 O5' A B1041 37.861 99.728 103.116 1.00 34.75 O
ATOM 6 C5' A B1041 37.022 98.833 102.381 1.00 32.34 C
ATOM 7 C4' A B1041 37.866 97.813 101.675 1.00 33.60 C
ATOM 8 O4' A B1041 38.804 98.509 100.811 1.00 35.87 O
ATOM 9 C3' A B1041 38.756 96.958 102.560 1.00 33.46 C
ATOM 10 O3' A B1041 38.011 95.880 103.131 1.00 34.89 O
ATOM 11 C2' A B1041 39.826 96.503 101.572 1.00 33.67 C
ATOM 12 O2' A B1041 39.406 95.460 100.722 1.00 32.25 O
ATOM 13 C1' A B1041 40.007 97.762 100.721 1.00 35.55 C
ATOM 14 N9 A B1041 41.124 98.598 101.164 1.00 36.73 N
ATOM 15 C8 A B1041 41.215 99.367 102.299 1.00 39.59 C
ATOM 16 N7 A B1041 42.372 99.968 102.438 1.00 39.02 N
ATOM 17 C5 A B1041 43.087 99.575 101.314 1.00 36.92 C
ATOM 18 C6 A B1041 44.387 99.862 100.877 1.00 35.41 C
ATOM 19 N6 A B1041 45.238 100.633 101.547 1.00 34.75 N
ATOM 20 N1 A B1041 44.791 99.317 99.712 1.00 35.78 N
ATOM 21 C2 A B1041 43.942 98.533 99.044 1.00 35.79 C
ATOM 22 N3 A B1041 42.701 98.183 99.355 1.00 36.86 N
ATOM 23 C4 A B1041 42.327 98.743 100.516 1.00 36.23 C
ATOM 24 P C B1042 38.707 94.865 104.176 1.00 35.60 P
ATOM 25 OP1 C B1042 40.185 94.883 104.015 1.00 34.74 O
ATOM 26 OP2 C B1042 37.982 93.576 104.032 1.00 36.16 O
ATOM 27 O5' C B1042 38.360 95.458 105.615 1.00 35.38 O
TER
ATOM 2 P C A1042 38.707 94.865 104.176 1.00 35.60 P
ATOM 3 OP1 C A1042 40.185 94.883 104.015 1.00 34.74 O
ATOM 4 OP2 C A1042 37.982 93.576 104.032 1.00 36.16 O
ATOM 5 O5' C A1042 38.360 95.458 105.615 1.00 35.38 O
ATOM 6 C5' C A1042 38.803 94.764 106.811 1.00 37.16 C
ATOM 7 C4' C A1042 37.826 94.959 107.953 1.00 35.07 C
ATOM 8 O4' C A1042 37.843 96.338 108.406 1.00 36.29 O
ATOM 9 C3' C A1042 36.363 94.699 107.656 1.00 34.77 C
ATOM 10 O3' C A1042 36.054 93.317 107.677 1.00 37.41 O
ATOM 11 C2' C A1042 35.684 95.452 108.787 1.00 35.19 C
ATOM 12 O2' C A1042 35.782 94.773 110.020 1.00 33.93 O
ATOM 13 C1' C A1042 36.550 96.707 108.858 1.00 34.98 C
ATOM 14 N1 C A1042 36.035 97.792 107.999 1.00 35.20 N
ATOM 15 C2 C A1042 34.855 98.443 108.380 1.00 35.40 C
ATOM 16 O2 C A1042 34.271 98.080 109.416 1.00 35.88 O
ATOM 17 N3 C A1042 34.381 99.448 107.613 1.00 34.87 N
ATOM 18 C4 C A1042 35.031 99.809 106.506 1.00 33.91 C
ATOM 19 N4 C A1042 34.533 100.819 105.796 1.00 32.37 N
ATOM 20 C5 C A1042 36.223 99.154 106.085 1.00 32.04 C
ATOM 21 C6 C A1042 36.686 98.162 106.854 1.00 33.26 C
ATOM 22 P C A1043 34.778 92.782 106.867 1.00 36.53 P
ATOM 23 OP1 C A1043 34.808 91.301 106.906 1.00 37.15 O
ATOM 24 OP2 C A1043 34.729 93.481 105.562 1.00 37.80 O
ATOM 25 O5' C A1043 33.548 93.285 107.733 1.00 34.26 O
TER
ATOM 1 O3' A B1040 37.775 101.679 101.529 1.00 36.23 O
ATOM 2 P A B1041 37.608 101.297 103.082 1.00 34.55 P
ATOM 3 OP1 A B1041 36.184 101.556 103.408 1.00 36.10 O
ATOM 4 OP2 A B1041 38.671 101.935 103.897 1.00 36.75 O
ATOM 5 O5' A B1041 37.861 99.728 103.116 1.00 34.75 O
ATOM 6 C5' A B1041 37.022 98.833 102.381 1.00 32.34 C
ATOM 7 C4' A B1041 37.866 97.813 101.675 1.00 33.60 C
ATOM 8 O4' A B1041 38.804 98.509 100.811 1.00 35.87 O
ATOM 9 C3' A B1041 38.756 96.958 102.560 1.00 33.46 C
ATOM 10 O3' A B1041 38.011 95.880 103.131 1.00 34.89 O
ATOM 11 C2' A B1041 39.826 96.503 101.572 1.00 33.67 C
ATOM 12 O2' A B1041 39.406 95.460 100.722 1.00 32.25 O
ATOM 13 C1' A B1041 40.007 97.762 100.721 1.00 35.55 C
ATOM 14 N9 A B1041 41.124 98.598 101.164 1.00 36.73 N
ATOM 15 C8 A B1041 41.215 99.367 102.299 1.00 39.59 C
ATOM 16 N7 A B1041 42.372 99.968 102.438 1.00 39.02 N
ATOM 17 C5 A B1041 43.087 99.575 101.314 1.00 36.92 C
ATOM 18 C6 A B1041 44.387 99.862 100.877 1.00 35.41 C
ATOM 19 N6 A B1041 45.238 100.633 101.547 1.00 34.75 N
ATOM 20 N1 A B1041 44.791 99.317 99.712 1.00 35.78 N
ATOM 21 C2 A B1041 43.942 98.533 99.044 1.00 35.79 C
ATOM 22 N3 A B1041 42.701 98.183 99.355 1.00 36.86 N
ATOM 23 C4 A B1041 42.327 98.743 100.516 1.00 36.23 C
ATOM 24 P C B1042 38.707 94.865 104.176 1.00 35.60 P
ATOM 25 OP1 C B1042 40.185 94.883 104.015 1.00 34.74 O
ATOM 26 OP2 C B1042 37.982 93.576 104.032 1.00 36.16 O
ATOM 27 O5' C B1042 38.360 95.458 105.615 1.00 35.38 O
TER
Atoms:
C2: (34.855,98.443,108.380)
OP1: (40.185,94.883,104.015)
OP2: (37.982,93.576,104.032)
C4: (35.031,99.809,106.506)
O5': (38.360,95.458,105.615)
C3': (36.363,94.699,107.656)
C1': (36.550,96.707,108.858)
O4': (37.843,96.338,108.406)
C5': (38.803,94.764,106.811)
P: (38.707,94.865,104.176)
O2: (34.271,98.080,109.416)
C4': (37.826,94.959,107.953)
C2': (35.684,95.452,108.787)
O2': (35.782,94.773,110.020)
N1: (36.035,97.792,107.999)
N3: (34.381,99.448,107.613)
N4: (34.533,100.819,105.796)
C6: (36.686,98.162,106.854)
C5: (36.223,99.154,106.085)
O3': (36.054,93.317,107.677)
OP1: (40.185,94.883,104.015)
OP2: (37.982,93.576,104.032)
C4: (35.031,99.809,106.506)
O5': (38.360,95.458,105.615)
C3': (36.363,94.699,107.656)
C1': (36.550,96.707,108.858)
O4': (37.843,96.338,108.406)
C5': (38.803,94.764,106.811)
P: (38.707,94.865,104.176)
O2: (34.271,98.080,109.416)
C4': (37.826,94.959,107.953)
C2': (35.684,95.452,108.787)
O2': (35.782,94.773,110.020)
N1: (36.035,97.792,107.999)
N3: (34.381,99.448,107.613)
N4: (34.533,100.819,105.796)
C6: (36.686,98.162,106.854)
C5: (36.223,99.154,106.085)
O3': (36.054,93.317,107.677)
OP1: (36.184,101.556,103.408)
OP2: (38.671,101.935,103.897)
C3': (38.756,96.958,102.560)
C1': (40.007,97.762,100.721)
C5': (37.022,98.833,102.381)
O4': (38.804,98.509,100.811)
C8: (41.215,99.367,102.299)
O2': (39.406,95.460,100.722)
C6: (44.387,99.862,100.877)
C5: (43.087,99.575,101.314)
C4: (42.327,98.743,100.516)
P: (37.608,101.297,103.082)
C4': (37.866,97.813,101.675)
C2': (39.826,96.503,101.572)
C2: (43.942,98.533,99.044)
N1: (44.791,99.317,99.712)
N3: (42.701,98.183,99.355)
N6: (45.238,100.633,101.547)
N7: (42.372,99.968,102.438)
N9: (41.124,98.598,101.164)
O5': (37.861,99.728,103.116)
O3': (38.011,95.880,103.131)
OP2: (38.671,101.935,103.897)
C3': (38.756,96.958,102.560)
C1': (40.007,97.762,100.721)
C5': (37.022,98.833,102.381)
O4': (38.804,98.509,100.811)
C8: (41.215,99.367,102.299)
O2': (39.406,95.460,100.722)
C6: (44.387,99.862,100.877)
C5: (43.087,99.575,101.314)
C4: (42.327,98.743,100.516)
P: (37.608,101.297,103.082)
C4': (37.866,97.813,101.675)
C2': (39.826,96.503,101.572)
C2: (43.942,98.533,99.044)
N1: (44.791,99.317,99.712)
N3: (42.701,98.183,99.355)
N6: (45.238,100.633,101.547)
N7: (42.372,99.968,102.438)
N9: (41.124,98.598,101.164)
O5': (37.861,99.728,103.116)
O3': (38.011,95.880,103.131)
Image (generated by PyMOL):