Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIT:01039:01038
Extra
PDB:
ATOM 1 O3' A A1038 34.622 111.103 106.207 1.00 32.30 O
ATOM 2 P C A1039 34.490 110.008 105.045 1.00 31.97 P
ATOM 3 OP1 C A1039 34.425 110.761 103.771 1.00 30.66 O
ATOM 4 OP2 C A1039 33.411 109.045 105.388 1.00 33.62 O
ATOM 5 O5' C A1039 35.851 109.197 105.133 1.00 35.62 O
ATOM 6 C5' C A1039 36.911 109.383 104.195 1.00 38.01 C
ATOM 7 C4' C A1039 37.999 108.389 104.488 1.00 42.51 C
ATOM 8 O4' C A1039 38.369 108.542 105.891 1.00 44.78 O
ATOM 9 C3' C A1039 37.572 106.928 104.427 1.00 44.86 C
ATOM 10 O3' C A1039 37.545 106.278 103.157 1.00 47.30 O
ATOM 11 C2' C A1039 38.652 106.290 105.282 1.00 47.81 C
ATOM 12 O2' C A1039 39.920 106.272 104.644 1.00 48.31 O
ATOM 13 C1' C A1039 38.697 107.272 106.443 1.00 46.84 C
ATOM 14 N1 C A1039 37.685 106.886 107.454 1.00 47.92 N
ATOM 15 C2 C A1039 38.074 106.032 108.498 1.00 48.93 C
ATOM 16 O2 C A1039 39.248 105.631 108.542 1.00 51.42 O
ATOM 17 N3 C A1039 37.162 105.666 109.430 1.00 47.90 N
ATOM 18 C4 C A1039 35.911 106.119 109.354 1.00 46.25 C
ATOM 19 N4 C A1039 35.056 105.751 110.310 1.00 44.96 N
ATOM 20 C5 C A1039 35.483 106.977 108.299 1.00 46.61 C
ATOM 21 C6 C A1039 36.393 107.334 107.381 1.00 47.12 C
ATOM 22 P A A1040 38.181 106.970 101.858 1.00 49.01 P
ATOM 23 OP1 A A1040 39.470 107.616 102.230 1.00 50.42 O
ATOM 24 OP2 A A1040 37.120 107.764 101.182 1.00 49.54 O
ATOM 25 O5' A A1040 38.552 105.723 100.946 1.00 42.63 O
TER
ATOM 1 O3' A B1037 31.564 109.277 111.232 1.00 35.48 O
ATOM 2 P A B1038 32.034 108.285 110.070 1.00 34.71 P
ATOM 3 OP1 A B1038 30.828 107.987 109.259 1.00 35.11 O
ATOM 4 OP2 A B1038 32.806 107.169 110.676 1.00 35.31 O
ATOM 5 O5' A B1038 33.037 109.166 109.205 1.00 33.85 O
ATOM 6 C5' A B1038 32.655 110.463 108.713 1.00 31.96 C
ATOM 7 C4' A B1038 33.880 111.307 108.485 1.00 32.13 C
ATOM 8 O4' A B1038 34.561 111.471 109.746 1.00 33.12 O
ATOM 9 C3' A B1038 34.921 110.704 107.549 1.00 32.04 C
ATOM 10 O3' A B1038 34.622 111.103 106.207 1.00 32.30 O
ATOM 11 C2' A B1038 36.228 111.343 108.027 1.00 32.34 C
ATOM 12 O2' A B1038 36.497 112.608 107.454 1.00 31.54 O
ATOM 13 C1' A B1038 35.953 111.555 109.518 1.00 33.02 C
ATOM 14 N9 A B1038 36.632 110.687 110.474 1.00 32.22 N
ATOM 15 C8 A B1038 36.599 109.318 110.588 1.00 32.87 C
ATOM 16 N7 A B1038 37.295 108.858 111.599 1.00 32.39 N
ATOM 17 C5 A B1038 37.833 110.000 112.179 1.00 29.56 C
ATOM 18 C6 A B1038 38.659 110.190 113.286 1.00 27.02 C
ATOM 19 N6 A B1038 39.118 109.198 114.045 1.00 27.72 N
ATOM 20 N1 A B1038 39.005 111.451 113.598 1.00 26.07 N
ATOM 21 C2 A B1038 38.547 112.449 112.840 1.00 27.94 C
ATOM 22 N3 A B1038 37.765 112.400 111.775 1.00 28.17 N
ATOM 23 C4 A B1038 37.439 111.129 111.492 1.00 30.01 C
ATOM 24 P C B1039 34.490 110.008 105.045 1.00 31.97 P
ATOM 25 OP1 C B1039 34.425 110.761 103.771 1.00 30.66 O
ATOM 26 OP2 C B1039 33.411 109.045 105.388 1.00 33.62 O
ATOM 27 O5' C B1039 35.851 109.197 105.133 1.00 35.62 O
TER
ATOM 2 P C A1039 34.490 110.008 105.045 1.00 31.97 P
ATOM 3 OP1 C A1039 34.425 110.761 103.771 1.00 30.66 O
ATOM 4 OP2 C A1039 33.411 109.045 105.388 1.00 33.62 O
ATOM 5 O5' C A1039 35.851 109.197 105.133 1.00 35.62 O
ATOM 6 C5' C A1039 36.911 109.383 104.195 1.00 38.01 C
ATOM 7 C4' C A1039 37.999 108.389 104.488 1.00 42.51 C
ATOM 8 O4' C A1039 38.369 108.542 105.891 1.00 44.78 O
ATOM 9 C3' C A1039 37.572 106.928 104.427 1.00 44.86 C
ATOM 10 O3' C A1039 37.545 106.278 103.157 1.00 47.30 O
ATOM 11 C2' C A1039 38.652 106.290 105.282 1.00 47.81 C
ATOM 12 O2' C A1039 39.920 106.272 104.644 1.00 48.31 O
ATOM 13 C1' C A1039 38.697 107.272 106.443 1.00 46.84 C
ATOM 14 N1 C A1039 37.685 106.886 107.454 1.00 47.92 N
ATOM 15 C2 C A1039 38.074 106.032 108.498 1.00 48.93 C
ATOM 16 O2 C A1039 39.248 105.631 108.542 1.00 51.42 O
ATOM 17 N3 C A1039 37.162 105.666 109.430 1.00 47.90 N
ATOM 18 C4 C A1039 35.911 106.119 109.354 1.00 46.25 C
ATOM 19 N4 C A1039 35.056 105.751 110.310 1.00 44.96 N
ATOM 20 C5 C A1039 35.483 106.977 108.299 1.00 46.61 C
ATOM 21 C6 C A1039 36.393 107.334 107.381 1.00 47.12 C
ATOM 22 P A A1040 38.181 106.970 101.858 1.00 49.01 P
ATOM 23 OP1 A A1040 39.470 107.616 102.230 1.00 50.42 O
ATOM 24 OP2 A A1040 37.120 107.764 101.182 1.00 49.54 O
ATOM 25 O5' A A1040 38.552 105.723 100.946 1.00 42.63 O
TER
ATOM 1 O3' A B1037 31.564 109.277 111.232 1.00 35.48 O
ATOM 2 P A B1038 32.034 108.285 110.070 1.00 34.71 P
ATOM 3 OP1 A B1038 30.828 107.987 109.259 1.00 35.11 O
ATOM 4 OP2 A B1038 32.806 107.169 110.676 1.00 35.31 O
ATOM 5 O5' A B1038 33.037 109.166 109.205 1.00 33.85 O
ATOM 6 C5' A B1038 32.655 110.463 108.713 1.00 31.96 C
ATOM 7 C4' A B1038 33.880 111.307 108.485 1.00 32.13 C
ATOM 8 O4' A B1038 34.561 111.471 109.746 1.00 33.12 O
ATOM 9 C3' A B1038 34.921 110.704 107.549 1.00 32.04 C
ATOM 10 O3' A B1038 34.622 111.103 106.207 1.00 32.30 O
ATOM 11 C2' A B1038 36.228 111.343 108.027 1.00 32.34 C
ATOM 12 O2' A B1038 36.497 112.608 107.454 1.00 31.54 O
ATOM 13 C1' A B1038 35.953 111.555 109.518 1.00 33.02 C
ATOM 14 N9 A B1038 36.632 110.687 110.474 1.00 32.22 N
ATOM 15 C8 A B1038 36.599 109.318 110.588 1.00 32.87 C
ATOM 16 N7 A B1038 37.295 108.858 111.599 1.00 32.39 N
ATOM 17 C5 A B1038 37.833 110.000 112.179 1.00 29.56 C
ATOM 18 C6 A B1038 38.659 110.190 113.286 1.00 27.02 C
ATOM 19 N6 A B1038 39.118 109.198 114.045 1.00 27.72 N
ATOM 20 N1 A B1038 39.005 111.451 113.598 1.00 26.07 N
ATOM 21 C2 A B1038 38.547 112.449 112.840 1.00 27.94 C
ATOM 22 N3 A B1038 37.765 112.400 111.775 1.00 28.17 N
ATOM 23 C4 A B1038 37.439 111.129 111.492 1.00 30.01 C
ATOM 24 P C B1039 34.490 110.008 105.045 1.00 31.97 P
ATOM 25 OP1 C B1039 34.425 110.761 103.771 1.00 30.66 O
ATOM 26 OP2 C B1039 33.411 109.045 105.388 1.00 33.62 O
ATOM 27 O5' C B1039 35.851 109.197 105.133 1.00 35.62 O
TER
Atoms:
C2: (38.074,106.032,108.498)
OP1: (34.425,110.761,103.771)
OP2: (33.411,109.045,105.388)
C4: (35.911,106.119,109.354)
O5': (35.851,109.197,105.133)
C3': (37.572,106.928,104.427)
C1': (38.697,107.272,106.443)
O4': (38.369,108.542,105.891)
C5': (36.911,109.383,104.195)
P: (34.490,110.008,105.045)
O2: (39.248,105.631,108.542)
C4': (37.999,108.389,104.488)
C2': (38.652,106.290,105.282)
O2': (39.920,106.272,104.644)
N1: (37.685,106.886,107.454)
N3: (37.162,105.666,109.430)
N4: (35.056,105.751,110.310)
C6: (36.393,107.334,107.381)
C5: (35.483,106.977,108.299)
O3': (37.545,106.278,103.157)
OP1: (34.425,110.761,103.771)
OP2: (33.411,109.045,105.388)
C4: (35.911,106.119,109.354)
O5': (35.851,109.197,105.133)
C3': (37.572,106.928,104.427)
C1': (38.697,107.272,106.443)
O4': (38.369,108.542,105.891)
C5': (36.911,109.383,104.195)
P: (34.490,110.008,105.045)
O2: (39.248,105.631,108.542)
C4': (37.999,108.389,104.488)
C2': (38.652,106.290,105.282)
O2': (39.920,106.272,104.644)
N1: (37.685,106.886,107.454)
N3: (37.162,105.666,109.430)
N4: (35.056,105.751,110.310)
C6: (36.393,107.334,107.381)
C5: (35.483,106.977,108.299)
O3': (37.545,106.278,103.157)
OP1: (30.828,107.987,109.259)
OP2: (32.806,107.169,110.676)
C3': (34.921,110.704,107.549)
C1': (35.953,111.555,109.518)
C5': (32.655,110.463,108.713)
O4': (34.561,111.471,109.746)
C8: (36.599,109.318,110.588)
O2': (36.497,112.608,107.454)
C6: (38.659,110.190,113.286)
C5: (37.833,110.000,112.179)
C4: (37.439,111.129,111.492)
P: (32.034,108.285,110.070)
C4': (33.880,111.307,108.485)
C2': (36.228,111.343,108.027)
C2: (38.547,112.449,112.840)
N1: (39.005,111.451,113.598)
N3: (37.765,112.400,111.775)
N6: (39.118,109.198,114.045)
N7: (37.295,108.858,111.599)
N9: (36.632,110.687,110.474)
O5': (33.037,109.166,109.205)
O3': (34.622,111.103,106.207)
OP2: (32.806,107.169,110.676)
C3': (34.921,110.704,107.549)
C1': (35.953,111.555,109.518)
C5': (32.655,110.463,108.713)
O4': (34.561,111.471,109.746)
C8: (36.599,109.318,110.588)
O2': (36.497,112.608,107.454)
C6: (38.659,110.190,113.286)
C5: (37.833,110.000,112.179)
C4: (37.439,111.129,111.492)
P: (32.034,108.285,110.070)
C4': (33.880,111.307,108.485)
C2': (36.228,111.343,108.027)
C2: (38.547,112.449,112.840)
N1: (39.005,111.451,113.598)
N3: (37.765,112.400,111.775)
N6: (39.118,109.198,114.045)
N7: (37.295,108.858,111.599)
N9: (36.632,110.687,110.474)
O5': (33.037,109.166,109.205)
O3': (34.622,111.103,106.207)
Image (generated by PyMOL):