Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YFG:A59:A58
Extra
PDB:
ATOM 1 O3' A A 58 1.928 16.063 -29.411 1.00 21.25 O
ATOM 2 P C A 59 1.996 14.842 -28.428 1.00 20.76 P
ATOM 3 OP1 C A 59 0.591 14.379 -28.223 1.00 20.71 O
ATOM 4 OP2 C A 59 2.809 15.285 -27.267 1.00 20.67 O
ATOM 5 O5' C A 59 2.837 13.758 -29.261 1.00 20.09 O
ATOM 6 C5' C A 59 2.439 12.360 -29.179 1.00 18.95 C
ATOM 7 C4' C A 59 3.537 11.601 -29.861 1.00 18.12 C
ATOM 8 O4' C A 59 4.213 12.419 -30.790 1.00 17.37 O
ATOM 9 C3' C A 59 4.651 11.129 -28.933 1.00 18.16 C
ATOM 10 O3' C A 59 4.247 9.957 -28.236 1.00 18.82 O
ATOM 11 C2' C A 59 5.788 10.892 -29.902 1.00 17.58 C
ATOM 12 O2' C A 59 5.550 9.671 -30.626 1.00 18.30 O
ATOM 13 C1' C A 59 5.589 12.025 -30.858 1.00 16.44 C
ATOM 14 N1 C A 59 6.465 13.148 -30.571 1.00 15.20 N
ATOM 15 C2 C A 59 7.807 12.872 -30.448 1.00 15.10 C
ATOM 16 O2 C A 59 8.211 11.720 -30.558 1.00 15.33 O
ATOM 17 N3 C A 59 8.631 13.926 -30.189 1.00 15.31 N
ATOM 18 C4 C A 59 8.165 15.186 -30.066 1.00 15.11 C
ATOM 19 N4 C A 59 8.984 16.191 -29.820 1.00 15.43 N
ATOM 20 C5 C A 59 6.772 15.452 -30.216 1.00 15.11 C
ATOM 21 C6 C A 59 5.965 14.408 -30.476 1.00 14.99 C
ATOM 22 P C A 60 4.122 10.173 -26.666 1.00 19.74 P
ATOM 23 OP1 C A 60 2.974 9.287 -26.298 1.00 19.59 O
ATOM 24 OP2 C A 60 3.923 11.621 -26.352 1.00 19.80 O
ATOM 25 O5' C A 60 5.612 9.819 -26.216 1.00 19.38 O
TER
ATOM 1 O3' A B 57 6.329 20.790 -28.851 1.00 21.51 O
ATOM 2 P A B 58 6.442 19.273 -29.274 1.00 21.82 P
ATOM 3 OP1 A B 58 6.727 18.387 -28.100 1.00 22.25 O
ATOM 4 OP2 A B 58 7.608 19.047 -30.189 1.00 21.84 O
ATOM 5 O5' A B 58 4.964 19.017 -29.807 1.00 21.66 O
ATOM 6 C5' A B 58 4.111 18.978 -28.632 1.00 21.80 C
ATOM 7 C4' A B 58 2.900 18.200 -29.056 1.00 22.20 C
ATOM 8 O4' A B 58 2.218 18.909 -30.066 1.00 22.66 O
ATOM 9 C3' A B 58 3.167 16.811 -29.629 1.00 22.06 C
ATOM 10 O3' A B 58 1.928 16.063 -29.411 1.00 21.25 O
ATOM 11 C2' A B 58 3.287 17.097 -31.145 1.00 22.65 C
ATOM 12 O2' A B 58 2.815 15.905 -31.800 1.00 23.11 O
ATOM 13 C1' A B 58 2.229 18.141 -31.309 1.00 22.95 C
ATOM 14 N9 A B 58 2.542 19.096 -32.374 1.00 23.25 N
ATOM 15 C8 A B 58 3.719 19.717 -32.674 1.00 23.59 C
ATOM 16 N7 A B 58 3.633 20.534 -33.712 1.00 23.72 N
ATOM 17 C5 A B 58 2.309 20.426 -34.108 1.00 23.58 C
ATOM 18 C6 A B 58 1.592 21.036 -35.145 1.00 23.67 C
ATOM 19 N6 A B 58 2.110 21.893 -36.006 1.00 24.11 N
ATOM 20 N1 A B 58 0.279 20.692 -35.241 1.00 23.65 N
ATOM 21 C2 A B 58 -0.279 19.805 -34.381 1.00 23.74 C
ATOM 22 N3 A B 58 0.335 19.195 -33.370 1.00 23.60 N
ATOM 23 C4 A B 58 1.632 19.549 -33.288 1.00 23.54 C
ATOM 24 P C B 59 1.996 14.842 -28.428 1.00 20.76 P
ATOM 25 OP1 C B 59 0.591 14.379 -28.223 1.00 20.71 O
ATOM 26 OP2 C B 59 2.809 15.285 -27.267 1.00 20.67 O
ATOM 27 O5' C B 59 2.837 13.758 -29.261 1.00 20.09 O
TER
ATOM 2 P C A 59 1.996 14.842 -28.428 1.00 20.76 P
ATOM 3 OP1 C A 59 0.591 14.379 -28.223 1.00 20.71 O
ATOM 4 OP2 C A 59 2.809 15.285 -27.267 1.00 20.67 O
ATOM 5 O5' C A 59 2.837 13.758 -29.261 1.00 20.09 O
ATOM 6 C5' C A 59 2.439 12.360 -29.179 1.00 18.95 C
ATOM 7 C4' C A 59 3.537 11.601 -29.861 1.00 18.12 C
ATOM 8 O4' C A 59 4.213 12.419 -30.790 1.00 17.37 O
ATOM 9 C3' C A 59 4.651 11.129 -28.933 1.00 18.16 C
ATOM 10 O3' C A 59 4.247 9.957 -28.236 1.00 18.82 O
ATOM 11 C2' C A 59 5.788 10.892 -29.902 1.00 17.58 C
ATOM 12 O2' C A 59 5.550 9.671 -30.626 1.00 18.30 O
ATOM 13 C1' C A 59 5.589 12.025 -30.858 1.00 16.44 C
ATOM 14 N1 C A 59 6.465 13.148 -30.571 1.00 15.20 N
ATOM 15 C2 C A 59 7.807 12.872 -30.448 1.00 15.10 C
ATOM 16 O2 C A 59 8.211 11.720 -30.558 1.00 15.33 O
ATOM 17 N3 C A 59 8.631 13.926 -30.189 1.00 15.31 N
ATOM 18 C4 C A 59 8.165 15.186 -30.066 1.00 15.11 C
ATOM 19 N4 C A 59 8.984 16.191 -29.820 1.00 15.43 N
ATOM 20 C5 C A 59 6.772 15.452 -30.216 1.00 15.11 C
ATOM 21 C6 C A 59 5.965 14.408 -30.476 1.00 14.99 C
ATOM 22 P C A 60 4.122 10.173 -26.666 1.00 19.74 P
ATOM 23 OP1 C A 60 2.974 9.287 -26.298 1.00 19.59 O
ATOM 24 OP2 C A 60 3.923 11.621 -26.352 1.00 19.80 O
ATOM 25 O5' C A 60 5.612 9.819 -26.216 1.00 19.38 O
TER
ATOM 1 O3' A B 57 6.329 20.790 -28.851 1.00 21.51 O
ATOM 2 P A B 58 6.442 19.273 -29.274 1.00 21.82 P
ATOM 3 OP1 A B 58 6.727 18.387 -28.100 1.00 22.25 O
ATOM 4 OP2 A B 58 7.608 19.047 -30.189 1.00 21.84 O
ATOM 5 O5' A B 58 4.964 19.017 -29.807 1.00 21.66 O
ATOM 6 C5' A B 58 4.111 18.978 -28.632 1.00 21.80 C
ATOM 7 C4' A B 58 2.900 18.200 -29.056 1.00 22.20 C
ATOM 8 O4' A B 58 2.218 18.909 -30.066 1.00 22.66 O
ATOM 9 C3' A B 58 3.167 16.811 -29.629 1.00 22.06 C
ATOM 10 O3' A B 58 1.928 16.063 -29.411 1.00 21.25 O
ATOM 11 C2' A B 58 3.287 17.097 -31.145 1.00 22.65 C
ATOM 12 O2' A B 58 2.815 15.905 -31.800 1.00 23.11 O
ATOM 13 C1' A B 58 2.229 18.141 -31.309 1.00 22.95 C
ATOM 14 N9 A B 58 2.542 19.096 -32.374 1.00 23.25 N
ATOM 15 C8 A B 58 3.719 19.717 -32.674 1.00 23.59 C
ATOM 16 N7 A B 58 3.633 20.534 -33.712 1.00 23.72 N
ATOM 17 C5 A B 58 2.309 20.426 -34.108 1.00 23.58 C
ATOM 18 C6 A B 58 1.592 21.036 -35.145 1.00 23.67 C
ATOM 19 N6 A B 58 2.110 21.893 -36.006 1.00 24.11 N
ATOM 20 N1 A B 58 0.279 20.692 -35.241 1.00 23.65 N
ATOM 21 C2 A B 58 -0.279 19.805 -34.381 1.00 23.74 C
ATOM 22 N3 A B 58 0.335 19.195 -33.370 1.00 23.60 N
ATOM 23 C4 A B 58 1.632 19.549 -33.288 1.00 23.54 C
ATOM 24 P C B 59 1.996 14.842 -28.428 1.00 20.76 P
ATOM 25 OP1 C B 59 0.591 14.379 -28.223 1.00 20.71 O
ATOM 26 OP2 C B 59 2.809 15.285 -27.267 1.00 20.67 O
ATOM 27 O5' C B 59 2.837 13.758 -29.261 1.00 20.09 O
TER
Atoms:
C2: (7.807,12.872,-30.448)
OP1: (0.591,14.379,-28.223)
OP2: (2.809,15.285,-27.267)
C4: (8.165,15.186,-30.066)
O5': (2.837,13.758,-29.261)
C3': (4.651,11.129,-28.933)
C1': (5.589,12.025,-30.858)
O4': (4.213,12.419,-30.790)
C5': (2.439,12.360,-29.179)
P: (1.996,14.842,-28.428)
O2: (8.211,11.720,-30.558)
C4': (3.537,11.601,-29.861)
C2': (5.788,10.892,-29.902)
O2': (5.550,9.671,-30.626)
N1: (6.465,13.148,-30.571)
N3: (8.631,13.926,-30.189)
N4: (8.984,16.191,-29.820)
C6: (5.965,14.408,-30.476)
C5: (6.772,15.452,-30.216)
O3': (4.247,9.957,-28.236)
OP1: (0.591,14.379,-28.223)
OP2: (2.809,15.285,-27.267)
C4: (8.165,15.186,-30.066)
O5': (2.837,13.758,-29.261)
C3': (4.651,11.129,-28.933)
C1': (5.589,12.025,-30.858)
O4': (4.213,12.419,-30.790)
C5': (2.439,12.360,-29.179)
P: (1.996,14.842,-28.428)
O2: (8.211,11.720,-30.558)
C4': (3.537,11.601,-29.861)
C2': (5.788,10.892,-29.902)
O2': (5.550,9.671,-30.626)
N1: (6.465,13.148,-30.571)
N3: (8.631,13.926,-30.189)
N4: (8.984,16.191,-29.820)
C6: (5.965,14.408,-30.476)
C5: (6.772,15.452,-30.216)
O3': (4.247,9.957,-28.236)
OP1: (6.727,18.387,-28.100)
OP2: (7.608,19.047,-30.189)
C3': (3.167,16.811,-29.629)
C1': (2.229,18.141,-31.309)
C5': (4.111,18.978,-28.632)
O4': (2.218,18.909,-30.066)
C8: (3.719,19.717,-32.674)
O2': (2.815,15.905,-31.800)
C6: (1.592,21.036,-35.145)
C5: (2.309,20.426,-34.108)
C4: (1.632,19.549,-33.288)
P: (6.442,19.273,-29.274)
C4': (2.900,18.200,-29.056)
C2': (3.287,17.097,-31.145)
C2: (-0.279,19.805,-34.381)
N1: (0.279,20.692,-35.241)
N3: (0.335,19.195,-33.370)
N6: (2.110,21.893,-36.006)
N7: (3.633,20.534,-33.712)
N9: (2.542,19.096,-32.374)
O5': (4.964,19.017,-29.807)
O3': (1.928,16.063,-29.411)
OP2: (7.608,19.047,-30.189)
C3': (3.167,16.811,-29.629)
C1': (2.229,18.141,-31.309)
C5': (4.111,18.978,-28.632)
O4': (2.218,18.909,-30.066)
C8: (3.719,19.717,-32.674)
O2': (2.815,15.905,-31.800)
C6: (1.592,21.036,-35.145)
C5: (2.309,20.426,-34.108)
C4: (1.632,19.549,-33.288)
P: (6.442,19.273,-29.274)
C4': (2.900,18.200,-29.056)
C2': (3.287,17.097,-31.145)
C2: (-0.279,19.805,-34.381)
N1: (0.279,20.692,-35.241)
N3: (0.335,19.195,-33.370)
N6: (2.110,21.893,-36.006)
N7: (3.633,20.534,-33.712)
N9: (2.542,19.096,-32.374)
O5': (4.964,19.017,-29.807)
O3': (1.928,16.063,-29.411)
Image (generated by PyMOL):