Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:11099:11098
Extra
PDB:
ATOM 1 O3' A A1098 49.924 -13.637 37.968 1.00 37.61 O
ATOM 2 P C A1099 50.603 -13.854 36.539 1.00 31.38 P
ATOM 3 OP1 C A1099 50.517 -15.305 36.226 1.00 31.51 O
ATOM 4 OP2 C A1099 51.947 -13.207 36.599 1.00 31.37 O
ATOM 5 O5' C A1099 49.654 -13.040 35.561 1.00 31.51 O
ATOM 6 C5' C A1099 48.695 -13.705 34.727 1.00 31.69 C
ATOM 7 C4' C A1099 48.523 -12.973 33.437 1.00 31.91 C
ATOM 8 O4' C A1099 48.284 -11.592 33.727 1.00 31.80 O
ATOM 9 C3' C A1099 49.749 -12.955 32.570 1.00 32.09 C
ATOM 10 O3' C A1099 49.858 -14.106 31.738 1.00 32.32 O
ATOM 11 C2' C A1099 49.629 -11.638 31.811 1.00 32.20 C
ATOM 12 O2' C A1099 48.737 -11.765 30.715 1.00 32.43 O
ATOM 13 C1' C A1099 48.969 -10.764 32.848 1.00 31.96 C
ATOM 14 N1 C A1099 49.910 -9.975 33.621 1.00 31.79 N
ATOM 15 C2 C A1099 50.744 -9.081 33.013 1.00 31.90 C
ATOM 16 O2 C A1099 50.690 -9.035 31.784 1.00 32.15 O
ATOM 17 N3 C A1099 51.596 -8.320 33.756 1.00 31.76 N
ATOM 18 C4 C A1099 51.600 -8.413 35.074 1.00 31.51 C
ATOM 19 N4 C A1099 52.423 -7.643 35.752 1.00 31.40 N
ATOM 20 C5 C A1099 50.732 -9.293 35.757 1.00 31.38 C
ATOM 21 C6 C A1099 49.926 -10.037 34.978 1.00 31.53 C
ATOM 22 P C A1100 51.276 -14.760 31.537 1.00 35.35 P
ATOM 23 OP1 C A1100 51.089 -16.049 30.895 1.00 35.55 O
ATOM 24 OP2 C A1100 51.930 -14.701 32.867 1.00 35.08 O
ATOM 25 O5' C A1100 51.983 -13.741 30.530 1.00 35.52 O
TER
ATOM 1 O3' A B1097 51.529 -8.317 41.080 1.00 37.26 O
ATOM 2 P A B1098 51.152 -8.360 39.553 1.00 37.24 P
ATOM 3 OP1 A B1098 52.372 -8.121 38.788 1.00 37.38 O
ATOM 4 OP2 A B1098 49.981 -7.445 39.373 1.00 37.24 O
ATOM 5 O5' A B1098 50.689 -9.837 39.348 1.00 37.28 O
ATOM 6 C5' A B1098 51.489 -10.922 39.716 1.00 37.26 C
ATOM 7 C4' A B1098 50.652 -12.137 39.732 1.00 37.28 C
ATOM 8 O4' A B1098 49.718 -12.008 40.837 1.00 37.09 O
ATOM 9 C3' A B1098 49.793 -12.318 38.469 1.00 37.48 C
ATOM 10 O3' A B1098 49.924 -13.637 37.968 1.00 37.61 O
ATOM 11 C2' A B1098 48.347 -12.079 38.944 1.00 37.37 C
ATOM 12 O2' A B1098 47.378 -12.885 38.292 1.00 37.51 O
ATOM 13 C1' A B1098 48.438 -12.417 40.420 1.00 37.15 C
ATOM 14 N9 A B1098 47.419 -11.776 41.240 1.00 37.00 N
ATOM 15 C8 A B1098 46.809 -10.619 40.973 1.00 37.01 C
ATOM 16 N7 A B1098 45.876 -10.306 41.838 1.00 36.87 N
ATOM 17 C5 A B1098 45.844 -11.335 42.709 1.00 36.77 C
ATOM 18 C6 A B1098 45.055 -11.555 43.826 1.00 36.62 C
ATOM 19 N6 A B1098 44.112 -10.727 44.296 1.00 36.54 N
ATOM 20 N1 A B1098 45.317 -12.679 44.488 1.00 36.56 N
ATOM 21 C2 A B1098 46.280 -13.489 44.067 1.00 36.65 C
ATOM 22 N3 A B1098 47.050 -13.370 43.022 1.00 36.79 N
ATOM 23 C4 A B1098 46.789 -12.251 42.363 1.00 36.84 C
ATOM 24 P C B1099 50.603 -13.854 36.539 1.00 31.38 P
ATOM 25 OP1 C B1099 50.517 -15.305 36.226 1.00 31.51 O
ATOM 26 OP2 C B1099 51.947 -13.207 36.599 1.00 31.37 O
ATOM 27 O5' C B1099 49.654 -13.040 35.561 1.00 31.51 O
TER
ATOM 2 P C A1099 50.603 -13.854 36.539 1.00 31.38 P
ATOM 3 OP1 C A1099 50.517 -15.305 36.226 1.00 31.51 O
ATOM 4 OP2 C A1099 51.947 -13.207 36.599 1.00 31.37 O
ATOM 5 O5' C A1099 49.654 -13.040 35.561 1.00 31.51 O
ATOM 6 C5' C A1099 48.695 -13.705 34.727 1.00 31.69 C
ATOM 7 C4' C A1099 48.523 -12.973 33.437 1.00 31.91 C
ATOM 8 O4' C A1099 48.284 -11.592 33.727 1.00 31.80 O
ATOM 9 C3' C A1099 49.749 -12.955 32.570 1.00 32.09 C
ATOM 10 O3' C A1099 49.858 -14.106 31.738 1.00 32.32 O
ATOM 11 C2' C A1099 49.629 -11.638 31.811 1.00 32.20 C
ATOM 12 O2' C A1099 48.737 -11.765 30.715 1.00 32.43 O
ATOM 13 C1' C A1099 48.969 -10.764 32.848 1.00 31.96 C
ATOM 14 N1 C A1099 49.910 -9.975 33.621 1.00 31.79 N
ATOM 15 C2 C A1099 50.744 -9.081 33.013 1.00 31.90 C
ATOM 16 O2 C A1099 50.690 -9.035 31.784 1.00 32.15 O
ATOM 17 N3 C A1099 51.596 -8.320 33.756 1.00 31.76 N
ATOM 18 C4 C A1099 51.600 -8.413 35.074 1.00 31.51 C
ATOM 19 N4 C A1099 52.423 -7.643 35.752 1.00 31.40 N
ATOM 20 C5 C A1099 50.732 -9.293 35.757 1.00 31.38 C
ATOM 21 C6 C A1099 49.926 -10.037 34.978 1.00 31.53 C
ATOM 22 P C A1100 51.276 -14.760 31.537 1.00 35.35 P
ATOM 23 OP1 C A1100 51.089 -16.049 30.895 1.00 35.55 O
ATOM 24 OP2 C A1100 51.930 -14.701 32.867 1.00 35.08 O
ATOM 25 O5' C A1100 51.983 -13.741 30.530 1.00 35.52 O
TER
ATOM 1 O3' A B1097 51.529 -8.317 41.080 1.00 37.26 O
ATOM 2 P A B1098 51.152 -8.360 39.553 1.00 37.24 P
ATOM 3 OP1 A B1098 52.372 -8.121 38.788 1.00 37.38 O
ATOM 4 OP2 A B1098 49.981 -7.445 39.373 1.00 37.24 O
ATOM 5 O5' A B1098 50.689 -9.837 39.348 1.00 37.28 O
ATOM 6 C5' A B1098 51.489 -10.922 39.716 1.00 37.26 C
ATOM 7 C4' A B1098 50.652 -12.137 39.732 1.00 37.28 C
ATOM 8 O4' A B1098 49.718 -12.008 40.837 1.00 37.09 O
ATOM 9 C3' A B1098 49.793 -12.318 38.469 1.00 37.48 C
ATOM 10 O3' A B1098 49.924 -13.637 37.968 1.00 37.61 O
ATOM 11 C2' A B1098 48.347 -12.079 38.944 1.00 37.37 C
ATOM 12 O2' A B1098 47.378 -12.885 38.292 1.00 37.51 O
ATOM 13 C1' A B1098 48.438 -12.417 40.420 1.00 37.15 C
ATOM 14 N9 A B1098 47.419 -11.776 41.240 1.00 37.00 N
ATOM 15 C8 A B1098 46.809 -10.619 40.973 1.00 37.01 C
ATOM 16 N7 A B1098 45.876 -10.306 41.838 1.00 36.87 N
ATOM 17 C5 A B1098 45.844 -11.335 42.709 1.00 36.77 C
ATOM 18 C6 A B1098 45.055 -11.555 43.826 1.00 36.62 C
ATOM 19 N6 A B1098 44.112 -10.727 44.296 1.00 36.54 N
ATOM 20 N1 A B1098 45.317 -12.679 44.488 1.00 36.56 N
ATOM 21 C2 A B1098 46.280 -13.489 44.067 1.00 36.65 C
ATOM 22 N3 A B1098 47.050 -13.370 43.022 1.00 36.79 N
ATOM 23 C4 A B1098 46.789 -12.251 42.363 1.00 36.84 C
ATOM 24 P C B1099 50.603 -13.854 36.539 1.00 31.38 P
ATOM 25 OP1 C B1099 50.517 -15.305 36.226 1.00 31.51 O
ATOM 26 OP2 C B1099 51.947 -13.207 36.599 1.00 31.37 O
ATOM 27 O5' C B1099 49.654 -13.040 35.561 1.00 31.51 O
TER
Atoms:
C2: (50.744,-9.081,33.013)
OP1: (50.517,-15.305,36.226)
OP2: (51.947,-13.207,36.599)
C4: (51.600,-8.413,35.074)
O5': (49.654,-13.040,35.561)
C3': (49.749,-12.955,32.570)
C1': (48.969,-10.764,32.848)
O4': (48.284,-11.592,33.727)
C5': (48.695,-13.705,34.727)
P: (50.603,-13.854,36.539)
O2: (50.690,-9.035,31.784)
C4': (48.523,-12.973,33.437)
C2': (49.629,-11.638,31.811)
O2': (48.737,-11.765,30.715)
N1: (49.910,-9.975,33.621)
N3: (51.596,-8.320,33.756)
N4: (52.423,-7.643,35.752)
C6: (49.926,-10.037,34.978)
C5: (50.732,-9.293,35.757)
O3': (49.858,-14.106,31.738)
OP1: (50.517,-15.305,36.226)
OP2: (51.947,-13.207,36.599)
C4: (51.600,-8.413,35.074)
O5': (49.654,-13.040,35.561)
C3': (49.749,-12.955,32.570)
C1': (48.969,-10.764,32.848)
O4': (48.284,-11.592,33.727)
C5': (48.695,-13.705,34.727)
P: (50.603,-13.854,36.539)
O2: (50.690,-9.035,31.784)
C4': (48.523,-12.973,33.437)
C2': (49.629,-11.638,31.811)
O2': (48.737,-11.765,30.715)
N1: (49.910,-9.975,33.621)
N3: (51.596,-8.320,33.756)
N4: (52.423,-7.643,35.752)
C6: (49.926,-10.037,34.978)
C5: (50.732,-9.293,35.757)
O3': (49.858,-14.106,31.738)
OP1: (52.372,-8.121,38.788)
OP2: (49.981,-7.445,39.373)
C3': (49.793,-12.318,38.469)
C1': (48.438,-12.417,40.420)
C5': (51.489,-10.922,39.716)
O4': (49.718,-12.008,40.837)
C8: (46.809,-10.619,40.973)
O2': (47.378,-12.885,38.292)
C6: (45.055,-11.555,43.826)
C5: (45.844,-11.335,42.709)
C4: (46.789,-12.251,42.363)
P: (51.152,-8.360,39.553)
C4': (50.652,-12.137,39.732)
C2': (48.347,-12.079,38.944)
C2: (46.280,-13.489,44.067)
N1: (45.317,-12.679,44.488)
N3: (47.050,-13.370,43.022)
N6: (44.112,-10.727,44.296)
N7: (45.876,-10.306,41.838)
N9: (47.419,-11.776,41.240)
O5': (50.689,-9.837,39.348)
O3': (49.924,-13.637,37.968)
OP2: (49.981,-7.445,39.373)
C3': (49.793,-12.318,38.469)
C1': (48.438,-12.417,40.420)
C5': (51.489,-10.922,39.716)
O4': (49.718,-12.008,40.837)
C8: (46.809,-10.619,40.973)
O2': (47.378,-12.885,38.292)
C6: (45.055,-11.555,43.826)
C5: (45.844,-11.335,42.709)
C4: (46.789,-12.251,42.363)
P: (51.152,-8.360,39.553)
C4': (50.652,-12.137,39.732)
C2': (48.347,-12.079,38.944)
C2: (46.280,-13.489,44.067)
N1: (45.317,-12.679,44.488)
N3: (47.050,-13.370,43.022)
N6: (44.112,-10.727,44.296)
N7: (45.876,-10.306,41.838)
N9: (47.419,-11.776,41.240)
O5': (50.689,-9.837,39.348)
O3': (49.924,-13.637,37.968)
Image (generated by PyMOL):