Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJ9:01039:01038
Extra
PDB:
ATOM 1 O3' A A1038 34.639 111.425 106.530 1.00 44.86 O
ATOM 2 P C A1039 34.529 110.316 105.371 1.00 46.48 P
ATOM 3 OP1 C A1039 34.518 111.069 104.096 1.00 44.81 O
ATOM 4 OP2 C A1039 33.441 109.340 105.662 1.00 46.54 O
ATOM 5 O5' C A1039 35.896 109.514 105.479 1.00 50.01 O
ATOM 6 C5' C A1039 36.951 109.699 104.532 1.00 51.68 C
ATOM 7 C4' C A1039 38.042 108.709 104.812 1.00 54.60 C
ATOM 8 O4' C A1039 38.445 108.878 106.199 1.00 56.46 O
ATOM 9 C3' C A1039 37.633 107.241 104.775 1.00 56.57 C
ATOM 10 O3' C A1039 37.573 106.584 103.510 1.00 57.95 O
ATOM 11 C2' C A1039 38.759 106.633 105.594 1.00 58.69 C
ATOM 12 O2' C A1039 40.006 106.668 104.916 1.00 59.61 O
ATOM 13 C1' C A1039 38.815 107.619 106.751 1.00 57.43 C
ATOM 14 N1 C A1039 37.827 107.219 107.778 1.00 57.91 N
ATOM 15 C2 C A1039 38.250 106.396 108.835 1.00 58.51 C
ATOM 16 O2 C A1039 39.444 106.043 108.886 1.00 58.91 O
ATOM 17 N3 C A1039 37.346 106.007 109.770 1.00 57.44 N
ATOM 18 C4 C A1039 36.075 106.410 109.680 1.00 56.99 C
ATOM 19 N4 C A1039 35.220 106.015 110.629 1.00 56.49 N
ATOM 20 C5 C A1039 35.623 107.242 108.618 1.00 57.72 C
ATOM 21 C6 C A1039 36.521 107.622 107.700 1.00 57.65 C
ATOM 22 P A A1040 38.106 107.305 102.180 1.00 59.59 P
ATOM 23 OP1 A A1040 39.324 108.096 102.517 1.00 60.13 O
ATOM 24 OP2 A A1040 36.966 107.961 101.482 1.00 58.87 O
ATOM 25 O5' A A1040 38.593 106.079 101.294 1.00 55.49 O
TER
ATOM 1 O3' A B1037 31.555 109.555 111.625 1.00 39.86 O
ATOM 2 P A B1038 32.108 108.624 110.450 1.00 42.60 P
ATOM 3 OP1 A B1038 30.952 108.274 109.578 1.00 41.21 O
ATOM 4 OP2 A B1038 32.931 107.536 111.062 1.00 41.88 O
ATOM 5 O5' A B1038 33.123 109.559 109.656 1.00 40.83 O
ATOM 6 C5' A B1038 32.701 110.804 109.080 1.00 40.75 C
ATOM 7 C4' A B1038 33.901 111.667 108.809 1.00 40.37 C
ATOM 8 O4' A B1038 34.583 111.872 110.063 1.00 40.28 O
ATOM 9 C3' A B1038 34.940 111.046 107.883 1.00 41.77 C
ATOM 10 O3' A B1038 34.639 111.425 106.530 1.00 44.86 O
ATOM 11 C2' A B1038 36.247 111.692 108.348 1.00 39.99 C
ATOM 12 O2' A B1038 36.496 112.945 107.755 1.00 40.37 O
ATOM 13 C1' A B1038 35.972 111.943 109.832 1.00 40.44 C
ATOM 14 N9 A B1038 36.651 111.109 110.820 1.00 39.02 N
ATOM 15 C8 A B1038 36.626 109.746 110.981 1.00 38.83 C
ATOM 16 N7 A B1038 37.327 109.325 112.005 1.00 38.19 N
ATOM 17 C5 A B1038 37.853 110.489 112.548 1.00 35.05 C
ATOM 18 C6 A B1038 38.669 110.723 113.654 1.00 32.26 C
ATOM 19 N6 A B1038 39.112 109.767 114.459 1.00 32.97 N
ATOM 20 N1 A B1038 39.015 111.991 113.917 1.00 31.81 N
ATOM 21 C2 A B1038 38.554 112.961 113.123 1.00 34.72 C
ATOM 22 N3 A B1038 37.771 112.872 112.063 1.00 34.34 N
ATOM 23 C4 A B1038 37.453 111.591 111.824 1.00 36.30 C
ATOM 24 P C B1039 34.529 110.316 105.371 1.00 46.48 P
ATOM 25 OP1 C B1039 34.518 111.069 104.096 1.00 44.81 O
ATOM 26 OP2 C B1039 33.441 109.340 105.662 1.00 46.54 O
ATOM 27 O5' C B1039 35.896 109.514 105.479 1.00 50.01 O
TER
ATOM 2 P C A1039 34.529 110.316 105.371 1.00 46.48 P
ATOM 3 OP1 C A1039 34.518 111.069 104.096 1.00 44.81 O
ATOM 4 OP2 C A1039 33.441 109.340 105.662 1.00 46.54 O
ATOM 5 O5' C A1039 35.896 109.514 105.479 1.00 50.01 O
ATOM 6 C5' C A1039 36.951 109.699 104.532 1.00 51.68 C
ATOM 7 C4' C A1039 38.042 108.709 104.812 1.00 54.60 C
ATOM 8 O4' C A1039 38.445 108.878 106.199 1.00 56.46 O
ATOM 9 C3' C A1039 37.633 107.241 104.775 1.00 56.57 C
ATOM 10 O3' C A1039 37.573 106.584 103.510 1.00 57.95 O
ATOM 11 C2' C A1039 38.759 106.633 105.594 1.00 58.69 C
ATOM 12 O2' C A1039 40.006 106.668 104.916 1.00 59.61 O
ATOM 13 C1' C A1039 38.815 107.619 106.751 1.00 57.43 C
ATOM 14 N1 C A1039 37.827 107.219 107.778 1.00 57.91 N
ATOM 15 C2 C A1039 38.250 106.396 108.835 1.00 58.51 C
ATOM 16 O2 C A1039 39.444 106.043 108.886 1.00 58.91 O
ATOM 17 N3 C A1039 37.346 106.007 109.770 1.00 57.44 N
ATOM 18 C4 C A1039 36.075 106.410 109.680 1.00 56.99 C
ATOM 19 N4 C A1039 35.220 106.015 110.629 1.00 56.49 N
ATOM 20 C5 C A1039 35.623 107.242 108.618 1.00 57.72 C
ATOM 21 C6 C A1039 36.521 107.622 107.700 1.00 57.65 C
ATOM 22 P A A1040 38.106 107.305 102.180 1.00 59.59 P
ATOM 23 OP1 A A1040 39.324 108.096 102.517 1.00 60.13 O
ATOM 24 OP2 A A1040 36.966 107.961 101.482 1.00 58.87 O
ATOM 25 O5' A A1040 38.593 106.079 101.294 1.00 55.49 O
TER
ATOM 1 O3' A B1037 31.555 109.555 111.625 1.00 39.86 O
ATOM 2 P A B1038 32.108 108.624 110.450 1.00 42.60 P
ATOM 3 OP1 A B1038 30.952 108.274 109.578 1.00 41.21 O
ATOM 4 OP2 A B1038 32.931 107.536 111.062 1.00 41.88 O
ATOM 5 O5' A B1038 33.123 109.559 109.656 1.00 40.83 O
ATOM 6 C5' A B1038 32.701 110.804 109.080 1.00 40.75 C
ATOM 7 C4' A B1038 33.901 111.667 108.809 1.00 40.37 C
ATOM 8 O4' A B1038 34.583 111.872 110.063 1.00 40.28 O
ATOM 9 C3' A B1038 34.940 111.046 107.883 1.00 41.77 C
ATOM 10 O3' A B1038 34.639 111.425 106.530 1.00 44.86 O
ATOM 11 C2' A B1038 36.247 111.692 108.348 1.00 39.99 C
ATOM 12 O2' A B1038 36.496 112.945 107.755 1.00 40.37 O
ATOM 13 C1' A B1038 35.972 111.943 109.832 1.00 40.44 C
ATOM 14 N9 A B1038 36.651 111.109 110.820 1.00 39.02 N
ATOM 15 C8 A B1038 36.626 109.746 110.981 1.00 38.83 C
ATOM 16 N7 A B1038 37.327 109.325 112.005 1.00 38.19 N
ATOM 17 C5 A B1038 37.853 110.489 112.548 1.00 35.05 C
ATOM 18 C6 A B1038 38.669 110.723 113.654 1.00 32.26 C
ATOM 19 N6 A B1038 39.112 109.767 114.459 1.00 32.97 N
ATOM 20 N1 A B1038 39.015 111.991 113.917 1.00 31.81 N
ATOM 21 C2 A B1038 38.554 112.961 113.123 1.00 34.72 C
ATOM 22 N3 A B1038 37.771 112.872 112.063 1.00 34.34 N
ATOM 23 C4 A B1038 37.453 111.591 111.824 1.00 36.30 C
ATOM 24 P C B1039 34.529 110.316 105.371 1.00 46.48 P
ATOM 25 OP1 C B1039 34.518 111.069 104.096 1.00 44.81 O
ATOM 26 OP2 C B1039 33.441 109.340 105.662 1.00 46.54 O
ATOM 27 O5' C B1039 35.896 109.514 105.479 1.00 50.01 O
TER
Atoms:
C2: (38.250,106.396,108.835)
OP1: (34.518,111.069,104.096)
OP2: (33.441,109.340,105.662)
C4: (36.075,106.410,109.680)
O5': (35.896,109.514,105.479)
C3': (37.633,107.241,104.775)
C1': (38.815,107.619,106.751)
O4': (38.445,108.878,106.199)
C5': (36.951,109.699,104.532)
P: (34.529,110.316,105.371)
O2: (39.444,106.043,108.886)
C4': (38.042,108.709,104.812)
C2': (38.759,106.633,105.594)
O2': (40.006,106.668,104.916)
N1: (37.827,107.219,107.778)
N3: (37.346,106.007,109.770)
N4: (35.220,106.015,110.629)
C6: (36.521,107.622,107.700)
C5: (35.623,107.242,108.618)
O3': (37.573,106.584,103.510)
OP1: (34.518,111.069,104.096)
OP2: (33.441,109.340,105.662)
C4: (36.075,106.410,109.680)
O5': (35.896,109.514,105.479)
C3': (37.633,107.241,104.775)
C1': (38.815,107.619,106.751)
O4': (38.445,108.878,106.199)
C5': (36.951,109.699,104.532)
P: (34.529,110.316,105.371)
O2: (39.444,106.043,108.886)
C4': (38.042,108.709,104.812)
C2': (38.759,106.633,105.594)
O2': (40.006,106.668,104.916)
N1: (37.827,107.219,107.778)
N3: (37.346,106.007,109.770)
N4: (35.220,106.015,110.629)
C6: (36.521,107.622,107.700)
C5: (35.623,107.242,108.618)
O3': (37.573,106.584,103.510)
OP1: (30.952,108.274,109.578)
OP2: (32.931,107.536,111.062)
C3': (34.940,111.046,107.883)
C1': (35.972,111.943,109.832)
C5': (32.701,110.804,109.080)
O4': (34.583,111.872,110.063)
C8: (36.626,109.746,110.981)
O2': (36.496,112.945,107.755)
C6: (38.669,110.723,113.654)
C5: (37.853,110.489,112.548)
C4: (37.453,111.591,111.824)
P: (32.108,108.624,110.450)
C4': (33.901,111.667,108.809)
C2': (36.247,111.692,108.348)
C2: (38.554,112.961,113.123)
N1: (39.015,111.991,113.917)
N3: (37.771,112.872,112.063)
N6: (39.112,109.767,114.459)
N7: (37.327,109.325,112.005)
N9: (36.651,111.109,110.820)
O5': (33.123,109.559,109.656)
O3': (34.639,111.425,106.530)
OP2: (32.931,107.536,111.062)
C3': (34.940,111.046,107.883)
C1': (35.972,111.943,109.832)
C5': (32.701,110.804,109.080)
O4': (34.583,111.872,110.063)
C8: (36.626,109.746,110.981)
O2': (36.496,112.945,107.755)
C6: (38.669,110.723,113.654)
C5: (37.853,110.489,112.548)
C4: (37.453,111.591,111.824)
P: (32.108,108.624,110.450)
C4': (33.901,111.667,108.809)
C2': (36.247,111.692,108.348)
C2: (38.554,112.961,113.123)
N1: (39.015,111.991,113.917)
N3: (37.771,112.872,112.063)
N6: (39.112,109.767,114.459)
N7: (37.327,109.325,112.005)
N9: (36.651,111.109,110.820)
O5': (33.123,109.559,109.656)
O3': (34.639,111.425,106.530)
Image (generated by PyMOL):