Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:01039:01038
Extra
PDB:
ATOM 1 O3' A A1038 34.581 111.283 106.257 1.00 34.32 O
ATOM 2 P C A1039 34.330 110.180 105.115 1.00 33.94 P
ATOM 3 OP1 C A1039 34.210 110.924 103.847 1.00 29.05 O
ATOM 4 OP2 C A1039 33.242 109.247 105.530 1.00 36.17 O
ATOM 5 O5' C A1039 35.653 109.305 105.123 1.00 35.64 O
ATOM 6 C5' C A1039 36.779 109.631 104.320 1.00 39.59 C
ATOM 7 C4' C A1039 37.867 108.632 104.588 1.00 43.82 C
ATOM 8 O4' C A1039 38.238 108.742 105.991 1.00 44.94 O
ATOM 9 C3' C A1039 37.438 107.172 104.481 1.00 46.11 C
ATOM 10 O3' C A1039 37.390 106.559 103.193 1.00 48.48 O
ATOM 11 C2' C A1039 38.522 106.510 105.309 1.00 48.12 C
ATOM 12 O2' C A1039 39.782 106.521 104.654 1.00 47.54 O
ATOM 13 C1' C A1039 38.572 107.457 106.501 1.00 46.50 C
ATOM 14 N1 C A1039 37.566 107.052 107.507 1.00 47.37 N
ATOM 15 C2 C A1039 37.949 106.159 108.527 1.00 48.88 C
ATOM 16 O2 C A1039 39.115 105.734 108.552 1.00 51.41 O
ATOM 17 N3 C A1039 37.036 105.784 109.455 1.00 47.65 N
ATOM 18 C4 C A1039 35.791 106.260 109.396 1.00 46.05 C
ATOM 19 N4 C A1039 34.932 105.878 110.341 1.00 44.87 N
ATOM 20 C5 C A1039 35.373 107.156 108.369 1.00 46.94 C
ATOM 21 C6 C A1039 36.283 107.523 107.455 1.00 46.20 C
ATOM 22 P A A1040 38.053 107.264 101.913 1.00 51.48 P
ATOM 23 OP1 A A1040 39.313 107.945 102.326 1.00 51.74 O
ATOM 24 OP2 A A1040 37.003 108.030 101.194 1.00 50.89 O
ATOM 25 O5' A A1040 38.475 106.014 101.022 1.00 44.26 O
TER
ATOM 1 O3' A B1037 31.436 109.490 111.264 1.00 35.72 O
ATOM 2 P A B1038 31.900 108.498 110.088 1.00 35.02 P
ATOM 3 OP1 A B1038 30.705 108.200 109.263 1.00 35.25 O
ATOM 4 OP2 A B1038 32.671 107.378 110.695 1.00 33.43 O
ATOM 5 O5' A B1038 32.914 109.376 109.224 1.00 34.89 O
ATOM 6 C5' A B1038 32.548 110.685 108.740 1.00 33.64 C
ATOM 7 C4' A B1038 33.786 111.517 108.525 1.00 34.63 C
ATOM 8 O4' A B1038 34.447 111.672 109.800 1.00 35.90 O
ATOM 9 C3' A B1038 34.832 110.885 107.612 1.00 34.53 C
ATOM 10 O3' A B1038 34.581 111.283 106.257 1.00 34.32 O
ATOM 11 C2' A B1038 36.149 111.478 108.120 1.00 33.32 C
ATOM 12 O2' A B1038 36.487 112.710 107.522 1.00 34.00 O
ATOM 13 C1' A B1038 35.844 111.726 109.602 1.00 34.00 C
ATOM 14 N9 A B1038 36.488 110.863 110.588 1.00 32.57 N
ATOM 15 C8 A B1038 36.408 109.498 110.732 1.00 34.25 C
ATOM 16 N7 A B1038 37.107 109.032 111.741 1.00 33.67 N
ATOM 17 C5 A B1038 37.691 110.166 112.292 1.00 30.31 C
ATOM 18 C6 A B1038 38.553 110.348 113.379 1.00 27.63 C
ATOM 19 N6 A B1038 39.012 109.352 114.133 1.00 28.38 N
ATOM 20 N1 A B1038 38.937 111.603 113.669 1.00 26.05 N
ATOM 21 C2 A B1038 38.488 112.605 112.907 1.00 27.68 C
ATOM 22 N3 A B1038 37.683 112.563 111.857 1.00 29.33 N
ATOM 23 C4 A B1038 37.315 111.298 111.596 1.00 30.43 C
ATOM 24 P C B1039 34.330 110.180 105.115 1.00 33.94 P
ATOM 25 OP1 C B1039 34.210 110.924 103.847 1.00 29.05 O
ATOM 26 OP2 C B1039 33.242 109.247 105.530 1.00 36.17 O
ATOM 27 O5' C B1039 35.653 109.305 105.123 1.00 35.64 O
TER
ATOM 2 P C A1039 34.330 110.180 105.115 1.00 33.94 P
ATOM 3 OP1 C A1039 34.210 110.924 103.847 1.00 29.05 O
ATOM 4 OP2 C A1039 33.242 109.247 105.530 1.00 36.17 O
ATOM 5 O5' C A1039 35.653 109.305 105.123 1.00 35.64 O
ATOM 6 C5' C A1039 36.779 109.631 104.320 1.00 39.59 C
ATOM 7 C4' C A1039 37.867 108.632 104.588 1.00 43.82 C
ATOM 8 O4' C A1039 38.238 108.742 105.991 1.00 44.94 O
ATOM 9 C3' C A1039 37.438 107.172 104.481 1.00 46.11 C
ATOM 10 O3' C A1039 37.390 106.559 103.193 1.00 48.48 O
ATOM 11 C2' C A1039 38.522 106.510 105.309 1.00 48.12 C
ATOM 12 O2' C A1039 39.782 106.521 104.654 1.00 47.54 O
ATOM 13 C1' C A1039 38.572 107.457 106.501 1.00 46.50 C
ATOM 14 N1 C A1039 37.566 107.052 107.507 1.00 47.37 N
ATOM 15 C2 C A1039 37.949 106.159 108.527 1.00 48.88 C
ATOM 16 O2 C A1039 39.115 105.734 108.552 1.00 51.41 O
ATOM 17 N3 C A1039 37.036 105.784 109.455 1.00 47.65 N
ATOM 18 C4 C A1039 35.791 106.260 109.396 1.00 46.05 C
ATOM 19 N4 C A1039 34.932 105.878 110.341 1.00 44.87 N
ATOM 20 C5 C A1039 35.373 107.156 108.369 1.00 46.94 C
ATOM 21 C6 C A1039 36.283 107.523 107.455 1.00 46.20 C
ATOM 22 P A A1040 38.053 107.264 101.913 1.00 51.48 P
ATOM 23 OP1 A A1040 39.313 107.945 102.326 1.00 51.74 O
ATOM 24 OP2 A A1040 37.003 108.030 101.194 1.00 50.89 O
ATOM 25 O5' A A1040 38.475 106.014 101.022 1.00 44.26 O
TER
ATOM 1 O3' A B1037 31.436 109.490 111.264 1.00 35.72 O
ATOM 2 P A B1038 31.900 108.498 110.088 1.00 35.02 P
ATOM 3 OP1 A B1038 30.705 108.200 109.263 1.00 35.25 O
ATOM 4 OP2 A B1038 32.671 107.378 110.695 1.00 33.43 O
ATOM 5 O5' A B1038 32.914 109.376 109.224 1.00 34.89 O
ATOM 6 C5' A B1038 32.548 110.685 108.740 1.00 33.64 C
ATOM 7 C4' A B1038 33.786 111.517 108.525 1.00 34.63 C
ATOM 8 O4' A B1038 34.447 111.672 109.800 1.00 35.90 O
ATOM 9 C3' A B1038 34.832 110.885 107.612 1.00 34.53 C
ATOM 10 O3' A B1038 34.581 111.283 106.257 1.00 34.32 O
ATOM 11 C2' A B1038 36.149 111.478 108.120 1.00 33.32 C
ATOM 12 O2' A B1038 36.487 112.710 107.522 1.00 34.00 O
ATOM 13 C1' A B1038 35.844 111.726 109.602 1.00 34.00 C
ATOM 14 N9 A B1038 36.488 110.863 110.588 1.00 32.57 N
ATOM 15 C8 A B1038 36.408 109.498 110.732 1.00 34.25 C
ATOM 16 N7 A B1038 37.107 109.032 111.741 1.00 33.67 N
ATOM 17 C5 A B1038 37.691 110.166 112.292 1.00 30.31 C
ATOM 18 C6 A B1038 38.553 110.348 113.379 1.00 27.63 C
ATOM 19 N6 A B1038 39.012 109.352 114.133 1.00 28.38 N
ATOM 20 N1 A B1038 38.937 111.603 113.669 1.00 26.05 N
ATOM 21 C2 A B1038 38.488 112.605 112.907 1.00 27.68 C
ATOM 22 N3 A B1038 37.683 112.563 111.857 1.00 29.33 N
ATOM 23 C4 A B1038 37.315 111.298 111.596 1.00 30.43 C
ATOM 24 P C B1039 34.330 110.180 105.115 1.00 33.94 P
ATOM 25 OP1 C B1039 34.210 110.924 103.847 1.00 29.05 O
ATOM 26 OP2 C B1039 33.242 109.247 105.530 1.00 36.17 O
ATOM 27 O5' C B1039 35.653 109.305 105.123 1.00 35.64 O
TER
Atoms:
C2: (37.949,106.159,108.527)
OP1: (34.210,110.924,103.847)
OP2: (33.242,109.247,105.530)
C4: (35.791,106.260,109.396)
O5': (35.653,109.305,105.123)
C3': (37.438,107.172,104.481)
C1': (38.572,107.457,106.501)
O4': (38.238,108.742,105.991)
C5': (36.779,109.631,104.320)
P: (34.330,110.180,105.115)
O2: (39.115,105.734,108.552)
C4': (37.867,108.632,104.588)
C2': (38.522,106.510,105.309)
O2': (39.782,106.521,104.654)
N1: (37.566,107.052,107.507)
N3: (37.036,105.784,109.455)
N4: (34.932,105.878,110.341)
C6: (36.283,107.523,107.455)
C5: (35.373,107.156,108.369)
O3': (37.390,106.559,103.193)
OP1: (34.210,110.924,103.847)
OP2: (33.242,109.247,105.530)
C4: (35.791,106.260,109.396)
O5': (35.653,109.305,105.123)
C3': (37.438,107.172,104.481)
C1': (38.572,107.457,106.501)
O4': (38.238,108.742,105.991)
C5': (36.779,109.631,104.320)
P: (34.330,110.180,105.115)
O2: (39.115,105.734,108.552)
C4': (37.867,108.632,104.588)
C2': (38.522,106.510,105.309)
O2': (39.782,106.521,104.654)
N1: (37.566,107.052,107.507)
N3: (37.036,105.784,109.455)
N4: (34.932,105.878,110.341)
C6: (36.283,107.523,107.455)
C5: (35.373,107.156,108.369)
O3': (37.390,106.559,103.193)
OP1: (30.705,108.200,109.263)
OP2: (32.671,107.378,110.695)
C3': (34.832,110.885,107.612)
C1': (35.844,111.726,109.602)
C5': (32.548,110.685,108.740)
O4': (34.447,111.672,109.800)
C8: (36.408,109.498,110.732)
O2': (36.487,112.710,107.522)
C6: (38.553,110.348,113.379)
C5: (37.691,110.166,112.292)
C4: (37.315,111.298,111.596)
P: (31.900,108.498,110.088)
C4': (33.786,111.517,108.525)
C2': (36.149,111.478,108.120)
C2: (38.488,112.605,112.907)
N1: (38.937,111.603,113.669)
N3: (37.683,112.563,111.857)
N6: (39.012,109.352,114.133)
N7: (37.107,109.032,111.741)
N9: (36.488,110.863,110.588)
O5': (32.914,109.376,109.224)
O3': (34.581,111.283,106.257)
OP2: (32.671,107.378,110.695)
C3': (34.832,110.885,107.612)
C1': (35.844,111.726,109.602)
C5': (32.548,110.685,108.740)
O4': (34.447,111.672,109.800)
C8: (36.408,109.498,110.732)
O2': (36.487,112.710,107.522)
C6: (38.553,110.348,113.379)
C5: (37.691,110.166,112.292)
C4: (37.315,111.298,111.596)
P: (31.900,108.498,110.088)
C4': (33.786,111.517,108.525)
C2': (36.149,111.478,108.120)
C2: (38.488,112.605,112.907)
N1: (38.937,111.603,113.669)
N3: (37.683,112.563,111.857)
N6: (39.012,109.352,114.133)
N7: (37.107,109.032,111.741)
N9: (36.488,110.863,110.588)
O5': (32.914,109.376,109.224)
O3': (34.581,111.283,106.257)
Image (generated by PyMOL):