Doublet info:
Details
Nucleotide types:
UU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:11209:11220
Extra
PDB:
ATOM 1 O3' G A1208 -5.149 -4.902 -18.529 1.00260.96 O
ATOM 2 P U A1209 -4.765 -5.128 -16.986 1.00227.05 P
ATOM 3 OP1 U A1209 -3.863 -6.308 -16.930 1.00226.46 O
ATOM 4 OP2 U A1209 -6.036 -5.170 -16.225 1.00228.06 O
ATOM 5 O5' U A1209 -3.954 -3.800 -16.621 1.00226.30 O
ATOM 6 C5' U A1209 -4.289 -3.022 -15.476 1.00226.50 C
ATOM 7 C4' U A1209 -3.227 -1.990 -15.168 1.00225.57 C
ATOM 8 O4' U A1209 -2.411 -1.759 -16.347 1.00224.90 O
ATOM 9 C3' U A1209 -3.730 -0.602 -14.788 1.00225.85 C
ATOM 10 O3' U A1209 -4.105 -0.497 -13.427 1.00226.15 O
ATOM 11 C2' U A1209 -2.560 0.293 -15.164 1.00224.84 C
ATOM 12 O2' U A1209 -1.542 0.228 -14.177 1.00224.06 O
ATOM 13 C1' U A1209 -2.050 -0.396 -16.427 1.00224.49 C
ATOM 14 N1 U A1209 -2.650 0.172 -17.650 1.00224.90 N
ATOM 15 C2 U A1209 -2.214 1.412 -18.078 1.00224.45 C
ATOM 16 O2 U A1209 -1.365 2.067 -17.492 1.00223.73 O
ATOM 17 N3 U A1209 -2.822 1.859 -19.226 1.00224.87 N
ATOM 18 C4 U A1209 -3.789 1.210 -19.969 1.00225.68 C
ATOM 19 O4 U A1209 -4.236 1.747 -20.983 1.00225.97 O
ATOM 20 C5 U A1209 -4.180 -0.067 -19.459 1.00226.11 C
ATOM 21 C6 U A1209 -3.608 -0.528 -18.346 1.00225.71 C
ATOM 22 P G A1210 -5.593 -0.887 -12.967 1.00227.81 P
ATOM 23 OP1 G A1210 -5.502 -2.205 -12.288 1.00227.87 O
ATOM 24 OP2 G A1210 -6.470 -0.755 -14.160 1.00228.48 O
ATOM 25 O5' G A1210 -5.947 0.248 -11.906 1.00228.00 O
TER
ATOM 1 O3' C B1219 -3.641 11.332 -23.750 1.00253.04 O
ATOM 2 P U B1220 -2.700 10.170 -24.349 1.00204.30 P
ATOM 3 OP1 U B1220 -1.645 10.832 -25.154 1.00203.42 O
ATOM 4 OP2 U B1220 -3.587 9.181 -25.012 1.00205.07 O
ATOM 5 O5' U B1220 -2.060 9.533 -23.041 1.00203.86 O
ATOM 6 C5' U B1220 -1.710 10.350 -21.935 1.00203.53 C
ATOM 7 C4' U B1220 -1.746 9.577 -20.643 1.00203.63 C
ATOM 8 O4' U B1220 -3.076 9.048 -20.418 1.00204.71 O
ATOM 9 C3' U B1220 -0.841 8.360 -20.583 1.00203.02 C
ATOM 10 O3' U B1220 0.494 8.700 -20.265 1.00201.96 O
ATOM 11 C2' U B1220 -1.514 7.478 -19.538 1.00203.63 C
ATOM 12 O2' U B1220 -1.149 7.883 -18.227 1.00203.32 O
ATOM 13 C1' U B1220 -2.995 7.808 -19.750 1.00204.76 C
ATOM 14 N1 U B1220 -3.715 6.785 -20.555 1.00205.40 N
ATOM 15 C2 U B1220 -3.722 5.448 -20.179 1.00205.52 C
ATOM 16 O2 U B1220 -3.124 4.999 -19.214 1.00205.10 O
ATOM 17 N3 U B1220 -4.454 4.621 -21.003 1.00206.16 N
ATOM 18 C4 U B1220 -5.184 4.969 -22.124 1.00206.69 C
ATOM 19 O4 U B1220 -5.792 4.104 -22.760 1.00207.24 O
ATOM 20 C5 U B1220 -5.144 6.363 -22.433 1.00206.54 C
ATOM 21 C6 U B1220 -4.440 7.194 -21.655 1.00205.92 C
ATOM 22 P C B1221 1.660 8.481 -21.342 1.00201.92 P
ATOM 23 OP1 C B1221 2.467 9.731 -21.382 1.00201.19 O
ATOM 24 OP2 C B1221 1.018 8.006 -22.594 1.00202.45 O
ATOM 25 O5' C B1221 2.503 7.304 -20.684 1.00201.36 O
TER
ATOM 2 P U A1209 -4.765 -5.128 -16.986 1.00227.05 P
ATOM 3 OP1 U A1209 -3.863 -6.308 -16.930 1.00226.46 O
ATOM 4 OP2 U A1209 -6.036 -5.170 -16.225 1.00228.06 O
ATOM 5 O5' U A1209 -3.954 -3.800 -16.621 1.00226.30 O
ATOM 6 C5' U A1209 -4.289 -3.022 -15.476 1.00226.50 C
ATOM 7 C4' U A1209 -3.227 -1.990 -15.168 1.00225.57 C
ATOM 8 O4' U A1209 -2.411 -1.759 -16.347 1.00224.90 O
ATOM 9 C3' U A1209 -3.730 -0.602 -14.788 1.00225.85 C
ATOM 10 O3' U A1209 -4.105 -0.497 -13.427 1.00226.15 O
ATOM 11 C2' U A1209 -2.560 0.293 -15.164 1.00224.84 C
ATOM 12 O2' U A1209 -1.542 0.228 -14.177 1.00224.06 O
ATOM 13 C1' U A1209 -2.050 -0.396 -16.427 1.00224.49 C
ATOM 14 N1 U A1209 -2.650 0.172 -17.650 1.00224.90 N
ATOM 15 C2 U A1209 -2.214 1.412 -18.078 1.00224.45 C
ATOM 16 O2 U A1209 -1.365 2.067 -17.492 1.00223.73 O
ATOM 17 N3 U A1209 -2.822 1.859 -19.226 1.00224.87 N
ATOM 18 C4 U A1209 -3.789 1.210 -19.969 1.00225.68 C
ATOM 19 O4 U A1209 -4.236 1.747 -20.983 1.00225.97 O
ATOM 20 C5 U A1209 -4.180 -0.067 -19.459 1.00226.11 C
ATOM 21 C6 U A1209 -3.608 -0.528 -18.346 1.00225.71 C
ATOM 22 P G A1210 -5.593 -0.887 -12.967 1.00227.81 P
ATOM 23 OP1 G A1210 -5.502 -2.205 -12.288 1.00227.87 O
ATOM 24 OP2 G A1210 -6.470 -0.755 -14.160 1.00228.48 O
ATOM 25 O5' G A1210 -5.947 0.248 -11.906 1.00228.00 O
TER
ATOM 1 O3' C B1219 -3.641 11.332 -23.750 1.00253.04 O
ATOM 2 P U B1220 -2.700 10.170 -24.349 1.00204.30 P
ATOM 3 OP1 U B1220 -1.645 10.832 -25.154 1.00203.42 O
ATOM 4 OP2 U B1220 -3.587 9.181 -25.012 1.00205.07 O
ATOM 5 O5' U B1220 -2.060 9.533 -23.041 1.00203.86 O
ATOM 6 C5' U B1220 -1.710 10.350 -21.935 1.00203.53 C
ATOM 7 C4' U B1220 -1.746 9.577 -20.643 1.00203.63 C
ATOM 8 O4' U B1220 -3.076 9.048 -20.418 1.00204.71 O
ATOM 9 C3' U B1220 -0.841 8.360 -20.583 1.00203.02 C
ATOM 10 O3' U B1220 0.494 8.700 -20.265 1.00201.96 O
ATOM 11 C2' U B1220 -1.514 7.478 -19.538 1.00203.63 C
ATOM 12 O2' U B1220 -1.149 7.883 -18.227 1.00203.32 O
ATOM 13 C1' U B1220 -2.995 7.808 -19.750 1.00204.76 C
ATOM 14 N1 U B1220 -3.715 6.785 -20.555 1.00205.40 N
ATOM 15 C2 U B1220 -3.722 5.448 -20.179 1.00205.52 C
ATOM 16 O2 U B1220 -3.124 4.999 -19.214 1.00205.10 O
ATOM 17 N3 U B1220 -4.454 4.621 -21.003 1.00206.16 N
ATOM 18 C4 U B1220 -5.184 4.969 -22.124 1.00206.69 C
ATOM 19 O4 U B1220 -5.792 4.104 -22.760 1.00207.24 O
ATOM 20 C5 U B1220 -5.144 6.363 -22.433 1.00206.54 C
ATOM 21 C6 U B1220 -4.440 7.194 -21.655 1.00205.92 C
ATOM 22 P C B1221 1.660 8.481 -21.342 1.00201.92 P
ATOM 23 OP1 C B1221 2.467 9.731 -21.382 1.00201.19 O
ATOM 24 OP2 C B1221 1.018 8.006 -22.594 1.00202.45 O
ATOM 25 O5' C B1221 2.503 7.304 -20.684 1.00201.36 O
TER
Atoms:
C4: (-3.789,1.210,-19.969)
N3: (-2.822,1.859,-19.226)
OP1: (-3.863,-6.308,-16.930)
OP2: (-6.036,-5.170,-16.225)
C2: (-2.214,1.412,-18.078)
C1': (-2.050,-0.396,-16.427)
C3': (-3.730,-0.602,-14.788)
O5': (-3.954,-3.800,-16.621)
O4': (-2.411,-1.759,-16.347)
C5': (-4.289,-3.022,-15.476)
P: (-4.765,-5.128,-16.986)
C4': (-3.227,-1.990,-15.168)
C2': (-2.560,0.293,-15.164)
O2': (-1.542,0.228,-14.177)
N1: (-2.650,0.172,-17.650)
O4: (-4.236,1.747,-20.983)
O2: (-1.365,2.067,-17.492)
C6: (-3.608,-0.528,-18.346)
C5: (-4.180,-0.067,-19.459)
O3': (-4.105,-0.497,-13.427)
N3: (-2.822,1.859,-19.226)
OP1: (-3.863,-6.308,-16.930)
OP2: (-6.036,-5.170,-16.225)
C2: (-2.214,1.412,-18.078)
C1': (-2.050,-0.396,-16.427)
C3': (-3.730,-0.602,-14.788)
O5': (-3.954,-3.800,-16.621)
O4': (-2.411,-1.759,-16.347)
C5': (-4.289,-3.022,-15.476)
P: (-4.765,-5.128,-16.986)
C4': (-3.227,-1.990,-15.168)
C2': (-2.560,0.293,-15.164)
O2': (-1.542,0.228,-14.177)
N1: (-2.650,0.172,-17.650)
O4: (-4.236,1.747,-20.983)
O2: (-1.365,2.067,-17.492)
C6: (-3.608,-0.528,-18.346)
C5: (-4.180,-0.067,-19.459)
O3': (-4.105,-0.497,-13.427)
C4: (-5.184,4.969,-22.124)
N3: (-4.454,4.621,-21.003)
OP1: (-1.645,10.832,-25.154)
OP2: (-3.587,9.181,-25.012)
C2: (-3.722,5.448,-20.179)
C1': (-2.995,7.808,-19.750)
C3': (-0.841,8.360,-20.583)
O5': (-2.060,9.533,-23.041)
O4': (-3.076,9.048,-20.418)
C5': (-1.710,10.350,-21.935)
P: (-2.700,10.170,-24.349)
C4': (-1.746,9.577,-20.643)
C2': (-1.514,7.478,-19.538)
O2': (-1.149,7.883,-18.227)
N1: (-3.715,6.785,-20.555)
O4: (-5.792,4.104,-22.760)
O2: (-3.124,4.999,-19.214)
C6: (-4.440,7.194,-21.655)
C5: (-5.144,6.363,-22.433)
O3': (0.494,8.700,-20.265)
N3: (-4.454,4.621,-21.003)
OP1: (-1.645,10.832,-25.154)
OP2: (-3.587,9.181,-25.012)
C2: (-3.722,5.448,-20.179)
C1': (-2.995,7.808,-19.750)
C3': (-0.841,8.360,-20.583)
O5': (-2.060,9.533,-23.041)
O4': (-3.076,9.048,-20.418)
C5': (-1.710,10.350,-21.935)
P: (-2.700,10.170,-24.349)
C4': (-1.746,9.577,-20.643)
C2': (-1.514,7.478,-19.538)
O2': (-1.149,7.883,-18.227)
N1: (-3.715,6.785,-20.555)
O4: (-5.792,4.104,-22.760)
O2: (-3.124,4.999,-19.214)
C6: (-4.440,7.194,-21.655)
C5: (-5.144,6.363,-22.433)
O3': (0.494,8.700,-20.265)
Image (generated by PyMOL):