Doublet info:
Details
Nucleotide types:
UU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJ9:016:0505
Extra
PDB:
ATOM 1 O3' A A 15 33.132 133.225 66.470 1.00 40.59 O
ATOM 2 P U A 16 32.766 132.754 64.971 1.00 42.19 P
ATOM 3 OP1 U A 16 33.226 131.348 64.778 1.00 40.00 O
ATOM 4 OP2 U A 16 33.213 133.808 64.017 1.00 41.90 O
ATOM 5 O5' U A 16 31.176 132.732 64.984 1.00 40.43 O
ATOM 6 C5' U A 16 30.477 131.845 65.861 1.00 39.17 C
ATOM 7 C4' U A 16 29.011 132.163 65.857 1.00 41.20 C
ATOM 8 O4' U A 16 28.804 133.494 66.384 1.00 42.58 O
ATOM 9 C3' U A 16 28.353 132.197 64.491 1.00 41.33 C
ATOM 10 O3' U A 16 28.001 130.890 64.094 1.00 42.16 O
ATOM 11 C2' U A 16 27.133 133.056 64.759 1.00 42.08 C
ATOM 12 O2' U A 16 26.160 132.337 65.488 1.00 40.72 O
ATOM 13 C1' U A 16 27.726 134.107 65.697 1.00 43.70 C
ATOM 14 N1 U A 16 28.231 135.316 65.025 1.00 45.56 N
ATOM 15 C2 U A 16 27.308 136.236 64.585 1.00 46.68 C
ATOM 16 O2 U A 16 26.107 136.046 64.637 1.00 48.10 O
ATOM 17 N3 U A 16 27.841 137.388 64.069 1.00 47.30 N
ATOM 18 C4 U A 16 29.170 137.698 63.928 1.00 46.71 C
ATOM 19 O4 U A 16 29.487 138.839 63.597 1.00 47.45 O
ATOM 20 C5 U A 16 30.065 136.670 64.343 1.00 46.41 C
ATOM 21 C6 U A 16 29.580 135.544 64.865 1.00 46.41 C
ATOM 22 P U A 17 28.289 130.413 62.596 1.00 45.15 P
ATOM 23 OP1 U A 17 28.216 128.928 62.585 1.00 44.89 O
ATOM 24 OP2 U A 17 29.512 131.090 62.103 1.00 47.03 O
ATOM 25 O5' U A 17 27.065 131.013 61.775 1.00 47.14 O
TER
ATOM 1 O3' A B 504 23.317 146.393 61.370 1.00 48.49 O
ATOM 2 P U B 505 23.256 146.182 62.958 1.00 48.56 P
ATOM 3 OP1 U B 505 21.990 146.770 63.457 1.00 48.19 O
ATOM 4 OP2 U B 505 24.546 146.633 63.535 1.00 50.66 O
ATOM 5 O5' U B 505 23.140 144.606 63.124 1.00 46.35 O
ATOM 6 C5' U B 505 21.913 143.929 62.828 1.00 45.46 C
ATOM 7 C4' U B 505 22.114 142.441 62.924 1.00 45.90 C
ATOM 8 O4' U B 505 23.211 142.064 62.061 1.00 43.59 O
ATOM 9 C3' U B 505 22.500 141.930 64.300 1.00 44.21 C
ATOM 10 O3' U B 505 21.316 141.620 65.027 1.00 45.43 O
ATOM 11 C2' U B 505 23.247 140.648 63.972 1.00 43.75 C
ATOM 12 O2' U B 505 22.345 139.598 63.716 1.00 41.69 O
ATOM 13 C1' U B 505 23.943 141.018 62.659 1.00 45.54 C
ATOM 14 N1 U B 505 25.350 141.437 62.754 1.00 48.00 N
ATOM 15 C2 U B 505 26.321 140.457 62.899 1.00 48.19 C
ATOM 16 O2 U B 505 26.062 139.273 62.992 1.00 49.10 O
ATOM 17 N3 U B 505 27.611 140.920 62.931 1.00 49.68 N
ATOM 18 C4 U B 505 28.026 142.233 62.837 1.00 50.63 C
ATOM 19 O4 U B 505 29.231 142.488 62.782 1.00 52.06 O
ATOM 20 C5 U B 505 26.968 143.181 62.713 1.00 51.40 C
ATOM 21 C6 U B 505 25.699 142.763 62.678 1.00 50.22 C
ATOM 22 P G B 506 21.027 142.313 66.451 1.00 49.17 P
ATOM 23 OP1 G B 506 19.888 141.565 67.049 1.00 48.24 O
ATOM 24 OP2 G B 506 20.935 143.795 66.275 1.00 46.53 O
ATOM 25 O5' G B 506 22.310 141.986 67.329 1.00 47.99 O
TER
ATOM 2 P U A 16 32.766 132.754 64.971 1.00 42.19 P
ATOM 3 OP1 U A 16 33.226 131.348 64.778 1.00 40.00 O
ATOM 4 OP2 U A 16 33.213 133.808 64.017 1.00 41.90 O
ATOM 5 O5' U A 16 31.176 132.732 64.984 1.00 40.43 O
ATOM 6 C5' U A 16 30.477 131.845 65.861 1.00 39.17 C
ATOM 7 C4' U A 16 29.011 132.163 65.857 1.00 41.20 C
ATOM 8 O4' U A 16 28.804 133.494 66.384 1.00 42.58 O
ATOM 9 C3' U A 16 28.353 132.197 64.491 1.00 41.33 C
ATOM 10 O3' U A 16 28.001 130.890 64.094 1.00 42.16 O
ATOM 11 C2' U A 16 27.133 133.056 64.759 1.00 42.08 C
ATOM 12 O2' U A 16 26.160 132.337 65.488 1.00 40.72 O
ATOM 13 C1' U A 16 27.726 134.107 65.697 1.00 43.70 C
ATOM 14 N1 U A 16 28.231 135.316 65.025 1.00 45.56 N
ATOM 15 C2 U A 16 27.308 136.236 64.585 1.00 46.68 C
ATOM 16 O2 U A 16 26.107 136.046 64.637 1.00 48.10 O
ATOM 17 N3 U A 16 27.841 137.388 64.069 1.00 47.30 N
ATOM 18 C4 U A 16 29.170 137.698 63.928 1.00 46.71 C
ATOM 19 O4 U A 16 29.487 138.839 63.597 1.00 47.45 O
ATOM 20 C5 U A 16 30.065 136.670 64.343 1.00 46.41 C
ATOM 21 C6 U A 16 29.580 135.544 64.865 1.00 46.41 C
ATOM 22 P U A 17 28.289 130.413 62.596 1.00 45.15 P
ATOM 23 OP1 U A 17 28.216 128.928 62.585 1.00 44.89 O
ATOM 24 OP2 U A 17 29.512 131.090 62.103 1.00 47.03 O
ATOM 25 O5' U A 17 27.065 131.013 61.775 1.00 47.14 O
TER
ATOM 1 O3' A B 504 23.317 146.393 61.370 1.00 48.49 O
ATOM 2 P U B 505 23.256 146.182 62.958 1.00 48.56 P
ATOM 3 OP1 U B 505 21.990 146.770 63.457 1.00 48.19 O
ATOM 4 OP2 U B 505 24.546 146.633 63.535 1.00 50.66 O
ATOM 5 O5' U B 505 23.140 144.606 63.124 1.00 46.35 O
ATOM 6 C5' U B 505 21.913 143.929 62.828 1.00 45.46 C
ATOM 7 C4' U B 505 22.114 142.441 62.924 1.00 45.90 C
ATOM 8 O4' U B 505 23.211 142.064 62.061 1.00 43.59 O
ATOM 9 C3' U B 505 22.500 141.930 64.300 1.00 44.21 C
ATOM 10 O3' U B 505 21.316 141.620 65.027 1.00 45.43 O
ATOM 11 C2' U B 505 23.247 140.648 63.972 1.00 43.75 C
ATOM 12 O2' U B 505 22.345 139.598 63.716 1.00 41.69 O
ATOM 13 C1' U B 505 23.943 141.018 62.659 1.00 45.54 C
ATOM 14 N1 U B 505 25.350 141.437 62.754 1.00 48.00 N
ATOM 15 C2 U B 505 26.321 140.457 62.899 1.00 48.19 C
ATOM 16 O2 U B 505 26.062 139.273 62.992 1.00 49.10 O
ATOM 17 N3 U B 505 27.611 140.920 62.931 1.00 49.68 N
ATOM 18 C4 U B 505 28.026 142.233 62.837 1.00 50.63 C
ATOM 19 O4 U B 505 29.231 142.488 62.782 1.00 52.06 O
ATOM 20 C5 U B 505 26.968 143.181 62.713 1.00 51.40 C
ATOM 21 C6 U B 505 25.699 142.763 62.678 1.00 50.22 C
ATOM 22 P G B 506 21.027 142.313 66.451 1.00 49.17 P
ATOM 23 OP1 G B 506 19.888 141.565 67.049 1.00 48.24 O
ATOM 24 OP2 G B 506 20.935 143.795 66.275 1.00 46.53 O
ATOM 25 O5' G B 506 22.310 141.986 67.329 1.00 47.99 O
TER
Atoms:
C4: (29.170,137.698,63.928)
N3: (27.841,137.388,64.069)
OP1: (33.226,131.348,64.778)
OP2: (33.213,133.808,64.017)
C2: (27.308,136.236,64.585)
C1': (27.726,134.107,65.697)
C3': (28.353,132.197,64.491)
O5': (31.176,132.732,64.984)
O4': (28.804,133.494,66.384)
C5': (30.477,131.845,65.861)
P: (32.766,132.754,64.971)
C4': (29.011,132.163,65.857)
C2': (27.133,133.056,64.759)
O2': (26.160,132.337,65.488)
N1: (28.231,135.316,65.025)
O4: (29.487,138.839,63.597)
O2: (26.107,136.046,64.637)
C6: (29.580,135.544,64.865)
C5: (30.065,136.670,64.343)
O3': (28.001,130.890,64.094)
N3: (27.841,137.388,64.069)
OP1: (33.226,131.348,64.778)
OP2: (33.213,133.808,64.017)
C2: (27.308,136.236,64.585)
C1': (27.726,134.107,65.697)
C3': (28.353,132.197,64.491)
O5': (31.176,132.732,64.984)
O4': (28.804,133.494,66.384)
C5': (30.477,131.845,65.861)
P: (32.766,132.754,64.971)
C4': (29.011,132.163,65.857)
C2': (27.133,133.056,64.759)
O2': (26.160,132.337,65.488)
N1: (28.231,135.316,65.025)
O4: (29.487,138.839,63.597)
O2: (26.107,136.046,64.637)
C6: (29.580,135.544,64.865)
C5: (30.065,136.670,64.343)
O3': (28.001,130.890,64.094)
C4: (28.026,142.233,62.837)
N3: (27.611,140.920,62.931)
OP1: (21.990,146.770,63.457)
OP2: (24.546,146.633,63.535)
C2: (26.321,140.457,62.899)
C1': (23.943,141.018,62.659)
C3': (22.500,141.930,64.300)
O5': (23.140,144.606,63.124)
O4': (23.211,142.064,62.061)
C5': (21.913,143.929,62.828)
P: (23.256,146.182,62.958)
C4': (22.114,142.441,62.924)
C2': (23.247,140.648,63.972)
O2': (22.345,139.598,63.716)
N1: (25.350,141.437,62.754)
O4: (29.231,142.488,62.782)
O2: (26.062,139.273,62.992)
C6: (25.699,142.763,62.678)
C5: (26.968,143.181,62.713)
O3': (21.316,141.620,65.027)
N3: (27.611,140.920,62.931)
OP1: (21.990,146.770,63.457)
OP2: (24.546,146.633,63.535)
C2: (26.321,140.457,62.899)
C1': (23.943,141.018,62.659)
C3': (22.500,141.930,64.300)
O5': (23.140,144.606,63.124)
O4': (23.211,142.064,62.061)
C5': (21.913,143.929,62.828)
P: (23.256,146.182,62.958)
C4': (22.114,142.441,62.924)
C2': (23.247,140.648,63.972)
O2': (22.345,139.598,63.716)
N1: (25.350,141.437,62.754)
O4: (29.231,142.488,62.782)
O2: (26.062,139.273,62.992)
C6: (25.699,142.763,62.678)
C5: (26.968,143.181,62.713)
O3': (21.316,141.620,65.027)
Image (generated by PyMOL):