Doublet info:
Details
Nucleotide types:
UU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12988:13003
Extra
PDB:
ATOM 1 O3' C A2987 82.630 63.471 12.992 1.00111.96 O
ATOM 2 P U A2988 81.047 63.695 13.190 1.00100.97 P
ATOM 3 OP1 U A2988 80.886 64.764 14.204 1.00101.13 O
ATOM 4 OP2 U A2988 80.427 62.349 13.457 1.00100.26 O
ATOM 5 O5' U A2988 80.598 64.234 11.761 1.00101.55 O
ATOM 6 C5' U A2988 81.171 65.411 11.211 1.00102.28 C
ATOM 7 C4' U A2988 81.070 65.405 9.710 1.00102.70 C
ATOM 8 O4' U A2988 81.706 64.206 9.198 1.00102.41 O
ATOM 9 C3' U A2988 79.660 65.334 9.143 1.00102.70 C
ATOM 10 O3' U A2988 79.008 66.585 9.091 1.00103.19 O
ATOM 11 C2' U A2988 79.875 64.703 7.778 1.00102.87 C
ATOM 12 O2' U A2988 80.378 65.661 6.860 1.00103.62 O
ATOM 13 C1' U A2988 80.983 63.708 8.090 1.00102.46 C
ATOM 14 N1 U A2988 80.465 62.374 8.446 1.00101.74 N
ATOM 15 C2 U A2988 79.856 61.589 7.483 1.00101.66 C
ATOM 16 O2 U A2988 79.684 61.963 6.341 1.00102.16 O
ATOM 17 N3 U A2988 79.451 60.352 7.937 1.00100.97 N
ATOM 18 C4 U A2988 79.612 59.857 9.233 1.00100.39 C
ATOM 19 O4 U A2988 79.213 58.729 9.532 1.00 99.81 O
ATOM 20 C5 U A2988 80.260 60.729 10.161 1.00100.53 C
ATOM 21 C6 U A2988 80.661 61.925 9.737 1.00101.18 C
ATOM 22 P U A2989 77.402 66.646 8.985 1.00 99.28 P
ATOM 23 OP1 U A2989 77.016 68.069 9.208 1.00 99.81 O
ATOM 24 OP2 U A2989 76.851 65.583 9.901 1.00 98.49 O
ATOM 25 O5' U A2989 77.125 66.259 7.468 1.00 99.55 O
TER
ATOM 1 O3' U B3002 74.849 56.801 -1.669 1.00 85.98 O
ATOM 2 P U B3003 76.427 57.015 -1.905 1.00 88.23 P
ATOM 3 OP1 U B3003 76.645 56.977 -3.362 1.00 88.79 O
ATOM 4 OP2 U B3003 77.149 56.039 -1.047 1.00 87.60 O
ATOM 5 O5' U B3003 76.669 58.480 -1.351 1.00 88.60 O
ATOM 6 C5' U B3003 76.052 59.597 -1.955 1.00 89.21 C
ATOM 7 C4' U B3003 76.655 60.863 -1.435 1.00 89.57 C
ATOM 8 O4' U B3003 76.278 61.043 -0.053 1.00 89.10 O
ATOM 9 C3' U B3003 78.176 60.893 -1.391 1.00 89.69 C
ATOM 10 O3' U B3003 78.764 61.186 -2.644 1.00 90.33 O
ATOM 11 C2' U B3003 78.466 61.941 -0.333 1.00 89.75 C
ATOM 12 O2' U B3003 78.383 63.243 -0.890 1.00 90.48 O
ATOM 13 C1' U B3003 77.293 61.749 0.623 1.00 89.22 C
ATOM 14 N1 U B3003 77.670 61.002 1.809 1.00 88.53 N
ATOM 15 C2 U B3003 78.368 61.767 2.711 1.00 88.59 C
ATOM 16 O2 U B3003 78.656 62.942 2.501 1.00 89.17 O
ATOM 17 N3 U B3003 78.716 61.098 3.849 1.00 87.96 N
ATOM 18 C4 U B3003 78.442 59.789 4.160 1.00 87.31 C
ATOM 19 O4 U B3003 78.844 59.370 5.247 1.00 86.81 O
ATOM 20 C5 U B3003 77.706 59.057 3.162 1.00 87.29 C
ATOM 21 C6 U B3003 77.345 59.677 2.024 1.00 87.90 C
ATOM 22 P G B3004 80.239 60.640 -2.978 1.00 92.98 P
ATOM 23 OP1 G B3004 80.498 60.959 -4.414 1.00 93.68 O
ATOM 24 OP2 G B3004 80.299 59.204 -2.528 1.00 92.25 O
ATOM 25 O5' G B3004 81.173 61.533 -2.037 1.00 93.07 O
TER
ATOM 2 P U A2988 81.047 63.695 13.190 1.00100.97 P
ATOM 3 OP1 U A2988 80.886 64.764 14.204 1.00101.13 O
ATOM 4 OP2 U A2988 80.427 62.349 13.457 1.00100.26 O
ATOM 5 O5' U A2988 80.598 64.234 11.761 1.00101.55 O
ATOM 6 C5' U A2988 81.171 65.411 11.211 1.00102.28 C
ATOM 7 C4' U A2988 81.070 65.405 9.710 1.00102.70 C
ATOM 8 O4' U A2988 81.706 64.206 9.198 1.00102.41 O
ATOM 9 C3' U A2988 79.660 65.334 9.143 1.00102.70 C
ATOM 10 O3' U A2988 79.008 66.585 9.091 1.00103.19 O
ATOM 11 C2' U A2988 79.875 64.703 7.778 1.00102.87 C
ATOM 12 O2' U A2988 80.378 65.661 6.860 1.00103.62 O
ATOM 13 C1' U A2988 80.983 63.708 8.090 1.00102.46 C
ATOM 14 N1 U A2988 80.465 62.374 8.446 1.00101.74 N
ATOM 15 C2 U A2988 79.856 61.589 7.483 1.00101.66 C
ATOM 16 O2 U A2988 79.684 61.963 6.341 1.00102.16 O
ATOM 17 N3 U A2988 79.451 60.352 7.937 1.00100.97 N
ATOM 18 C4 U A2988 79.612 59.857 9.233 1.00100.39 C
ATOM 19 O4 U A2988 79.213 58.729 9.532 1.00 99.81 O
ATOM 20 C5 U A2988 80.260 60.729 10.161 1.00100.53 C
ATOM 21 C6 U A2988 80.661 61.925 9.737 1.00101.18 C
ATOM 22 P U A2989 77.402 66.646 8.985 1.00 99.28 P
ATOM 23 OP1 U A2989 77.016 68.069 9.208 1.00 99.81 O
ATOM 24 OP2 U A2989 76.851 65.583 9.901 1.00 98.49 O
ATOM 25 O5' U A2989 77.125 66.259 7.468 1.00 99.55 O
TER
ATOM 1 O3' U B3002 74.849 56.801 -1.669 1.00 85.98 O
ATOM 2 P U B3003 76.427 57.015 -1.905 1.00 88.23 P
ATOM 3 OP1 U B3003 76.645 56.977 -3.362 1.00 88.79 O
ATOM 4 OP2 U B3003 77.149 56.039 -1.047 1.00 87.60 O
ATOM 5 O5' U B3003 76.669 58.480 -1.351 1.00 88.60 O
ATOM 6 C5' U B3003 76.052 59.597 -1.955 1.00 89.21 C
ATOM 7 C4' U B3003 76.655 60.863 -1.435 1.00 89.57 C
ATOM 8 O4' U B3003 76.278 61.043 -0.053 1.00 89.10 O
ATOM 9 C3' U B3003 78.176 60.893 -1.391 1.00 89.69 C
ATOM 10 O3' U B3003 78.764 61.186 -2.644 1.00 90.33 O
ATOM 11 C2' U B3003 78.466 61.941 -0.333 1.00 89.75 C
ATOM 12 O2' U B3003 78.383 63.243 -0.890 1.00 90.48 O
ATOM 13 C1' U B3003 77.293 61.749 0.623 1.00 89.22 C
ATOM 14 N1 U B3003 77.670 61.002 1.809 1.00 88.53 N
ATOM 15 C2 U B3003 78.368 61.767 2.711 1.00 88.59 C
ATOM 16 O2 U B3003 78.656 62.942 2.501 1.00 89.17 O
ATOM 17 N3 U B3003 78.716 61.098 3.849 1.00 87.96 N
ATOM 18 C4 U B3003 78.442 59.789 4.160 1.00 87.31 C
ATOM 19 O4 U B3003 78.844 59.370 5.247 1.00 86.81 O
ATOM 20 C5 U B3003 77.706 59.057 3.162 1.00 87.29 C
ATOM 21 C6 U B3003 77.345 59.677 2.024 1.00 87.90 C
ATOM 22 P G B3004 80.239 60.640 -2.978 1.00 92.98 P
ATOM 23 OP1 G B3004 80.498 60.959 -4.414 1.00 93.68 O
ATOM 24 OP2 G B3004 80.299 59.204 -2.528 1.00 92.25 O
ATOM 25 O5' G B3004 81.173 61.533 -2.037 1.00 93.07 O
TER
Atoms:
C4: (79.612,59.857,9.233)
N3: (79.451,60.352,7.937)
OP1: (80.886,64.764,14.204)
OP2: (80.427,62.349,13.457)
C2: (79.856,61.589,7.483)
C1': (80.983,63.708,8.090)
C3': (79.660,65.334,9.143)
O5': (80.598,64.234,11.761)
O4': (81.706,64.206,9.198)
C5': (81.171,65.411,11.211)
P: (81.047,63.695,13.190)
C4': (81.070,65.405,9.710)
C2': (79.875,64.703,7.778)
O2': (80.378,65.661,6.860)
N1: (80.465,62.374,8.446)
O4: (79.213,58.729,9.532)
O2: (79.684,61.963,6.341)
C6: (80.661,61.925,9.737)
C5: (80.260,60.729,10.161)
O3': (79.008,66.585,9.091)
N3: (79.451,60.352,7.937)
OP1: (80.886,64.764,14.204)
OP2: (80.427,62.349,13.457)
C2: (79.856,61.589,7.483)
C1': (80.983,63.708,8.090)
C3': (79.660,65.334,9.143)
O5': (80.598,64.234,11.761)
O4': (81.706,64.206,9.198)
C5': (81.171,65.411,11.211)
P: (81.047,63.695,13.190)
C4': (81.070,65.405,9.710)
C2': (79.875,64.703,7.778)
O2': (80.378,65.661,6.860)
N1: (80.465,62.374,8.446)
O4: (79.213,58.729,9.532)
O2: (79.684,61.963,6.341)
C6: (80.661,61.925,9.737)
C5: (80.260,60.729,10.161)
O3': (79.008,66.585,9.091)
C4: (78.442,59.789,4.160)
N3: (78.716,61.098,3.849)
OP1: (76.645,56.977,-3.362)
OP2: (77.149,56.039,-1.047)
C2: (78.368,61.767,2.711)
C1': (77.293,61.749,0.623)
C3': (78.176,60.893,-1.391)
O5': (76.669,58.480,-1.351)
O4': (76.278,61.043,-0.053)
C5': (76.052,59.597,-1.955)
P: (76.427,57.015,-1.905)
C4': (76.655,60.863,-1.435)
C2': (78.466,61.941,-0.333)
O2': (78.383,63.243,-0.890)
N1: (77.670,61.002,1.809)
O4: (78.844,59.370,5.247)
O2: (78.656,62.942,2.501)
C6: (77.345,59.677,2.024)
C5: (77.706,59.057,3.162)
O3': (78.764,61.186,-2.644)
N3: (78.716,61.098,3.849)
OP1: (76.645,56.977,-3.362)
OP2: (77.149,56.039,-1.047)
C2: (78.368,61.767,2.711)
C1': (77.293,61.749,0.623)
C3': (78.176,60.893,-1.391)
O5': (76.669,58.480,-1.351)
O4': (76.278,61.043,-0.053)
C5': (76.052,59.597,-1.955)
P: (76.427,57.015,-1.905)
C4': (76.655,60.863,-1.435)
C2': (78.466,61.941,-0.333)
O2': (78.383,63.243,-0.890)
N1: (77.670,61.002,1.809)
O4: (78.844,59.370,5.247)
O2: (78.656,62.942,2.501)
C6: (77.345,59.677,2.024)
C5: (77.706,59.057,3.162)
O3': (78.764,61.186,-2.644)
Image (generated by PyMOL):