Doublet info:
Details
Nucleotide types:
UU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1Y39:D39:D50
Extra
PDB:
ATOM 1 O3' G A 38 117.785 70.425 2.254 1.00 62.23 O
ATOM 2 P U A 39 116.190 70.590 2.351 1.00 64.60 P
ATOM 3 OP1 U A 39 115.943 72.052 2.486 1.00 64.25 O
ATOM 4 OP2 U A 39 115.639 69.651 3.373 1.00 62.95 O
ATOM 5 O5' U A 39 115.693 70.125 0.912 1.00 64.73 O
ATOM 6 C5' U A 39 114.705 70.867 0.213 1.00 67.28 C
ATOM 7 C4' U A 39 114.787 70.592 -1.267 1.00 68.48 C
ATOM 8 O4' U A 39 115.861 71.342 -1.886 1.00 68.56 O
ATOM 9 C3' U A 39 115.101 69.165 -1.651 1.00 70.63 C
ATOM 10 O3' U A 39 113.967 68.325 -1.501 1.00 74.09 O
ATOM 11 C2' U A 39 115.541 69.326 -3.103 1.00 69.64 C
ATOM 12 O2' U A 39 114.450 69.427 -3.992 1.00 70.45 O
ATOM 13 C1' U A 39 116.288 70.661 -3.055 1.00 68.37 C
ATOM 14 N1 U A 39 117.752 70.526 -3.025 1.00 67.75 N
ATOM 15 C2 U A 39 118.394 70.253 -4.220 1.00 67.64 C
ATOM 16 O2 U A 39 117.796 70.117 -5.272 1.00 68.28 O
ATOM 17 N3 U A 39 119.762 70.143 -4.135 1.00 66.89 N
ATOM 18 C4 U A 39 120.537 70.276 -3.002 1.00 66.52 C
ATOM 19 O4 U A 39 121.757 70.199 -3.092 1.00 65.78 O
ATOM 20 C5 U A 39 119.803 70.553 -1.808 1.00 67.46 C
ATOM 21 C6 U A 39 118.467 70.667 -1.859 1.00 67.83 C
ATOM 22 P G A 40 114.162 66.731 -1.502 1.00 78.51 P
ATOM 23 OP1 G A 40 112.988 66.098 -0.846 1.00 79.14 O
ATOM 24 OP2 G A 40 115.531 66.429 -0.995 1.00 77.70 O
ATOM 25 O5' G A 40 114.113 66.369 -3.052 1.00 78.85 O
TER
ATOM 1 O3' C B 49 127.506 69.780 -11.665 1.00 71.55 O
ATOM 2 P U B 50 127.195 71.249 -11.098 1.00 73.03 P
ATOM 3 OP1 U B 50 127.336 72.162 -12.261 1.00 74.09 O
ATOM 4 OP2 U B 50 127.993 71.493 -9.866 1.00 72.83 O
ATOM 5 O5' U B 50 125.667 71.185 -10.643 1.00 72.08 O
ATOM 6 C5' U B 50 124.650 70.813 -11.557 1.00 70.28 C
ATOM 7 C4' U B 50 123.337 70.612 -10.832 1.00 70.48 C
ATOM 8 O4' U B 50 123.476 69.535 -9.864 1.00 70.43 O
ATOM 9 C3' U B 50 122.805 71.751 -9.976 1.00 68.99 C
ATOM 10 O3' U B 50 122.155 72.758 -10.725 1.00 69.10 O
ATOM 11 C2' U B 50 121.786 71.022 -9.118 1.00 68.53 C
ATOM 12 O2' U B 50 120.597 70.741 -9.835 1.00 66.51 O
ATOM 13 C1' U B 50 122.550 69.737 -8.798 1.00 68.59 C
ATOM 14 N1 U B 50 123.307 69.868 -7.545 1.00 67.32 N
ATOM 15 C2 U B 50 122.612 69.720 -6.359 1.00 66.06 C
ATOM 16 O2 U B 50 121.417 69.478 -6.317 1.00 65.59 O
ATOM 17 N3 U B 50 123.370 69.866 -5.224 1.00 65.03 N
ATOM 18 C4 U B 50 124.723 70.138 -5.155 1.00 64.73 C
ATOM 19 O4 U B 50 125.266 70.244 -4.054 1.00 63.55 O
ATOM 20 C5 U B 50 125.371 70.275 -6.425 1.00 65.51 C
ATOM 21 C6 U B 50 124.659 70.138 -7.548 1.00 66.53 C
ATOM 22 P C B 51 121.993 74.228 -10.096 1.00 69.33 P
ATOM 23 OP1 C B 51 121.491 75.075 -11.208 1.00 70.27 O
ATOM 24 OP2 C B 51 123.242 74.615 -9.378 1.00 67.87 O
ATOM 25 O5' C B 51 120.835 74.076 -9.011 1.00 68.25 O
TER
ATOM 2 P U A 39 116.190 70.590 2.351 1.00 64.60 P
ATOM 3 OP1 U A 39 115.943 72.052 2.486 1.00 64.25 O
ATOM 4 OP2 U A 39 115.639 69.651 3.373 1.00 62.95 O
ATOM 5 O5' U A 39 115.693 70.125 0.912 1.00 64.73 O
ATOM 6 C5' U A 39 114.705 70.867 0.213 1.00 67.28 C
ATOM 7 C4' U A 39 114.787 70.592 -1.267 1.00 68.48 C
ATOM 8 O4' U A 39 115.861 71.342 -1.886 1.00 68.56 O
ATOM 9 C3' U A 39 115.101 69.165 -1.651 1.00 70.63 C
ATOM 10 O3' U A 39 113.967 68.325 -1.501 1.00 74.09 O
ATOM 11 C2' U A 39 115.541 69.326 -3.103 1.00 69.64 C
ATOM 12 O2' U A 39 114.450 69.427 -3.992 1.00 70.45 O
ATOM 13 C1' U A 39 116.288 70.661 -3.055 1.00 68.37 C
ATOM 14 N1 U A 39 117.752 70.526 -3.025 1.00 67.75 N
ATOM 15 C2 U A 39 118.394 70.253 -4.220 1.00 67.64 C
ATOM 16 O2 U A 39 117.796 70.117 -5.272 1.00 68.28 O
ATOM 17 N3 U A 39 119.762 70.143 -4.135 1.00 66.89 N
ATOM 18 C4 U A 39 120.537 70.276 -3.002 1.00 66.52 C
ATOM 19 O4 U A 39 121.757 70.199 -3.092 1.00 65.78 O
ATOM 20 C5 U A 39 119.803 70.553 -1.808 1.00 67.46 C
ATOM 21 C6 U A 39 118.467 70.667 -1.859 1.00 67.83 C
ATOM 22 P G A 40 114.162 66.731 -1.502 1.00 78.51 P
ATOM 23 OP1 G A 40 112.988 66.098 -0.846 1.00 79.14 O
ATOM 24 OP2 G A 40 115.531 66.429 -0.995 1.00 77.70 O
ATOM 25 O5' G A 40 114.113 66.369 -3.052 1.00 78.85 O
TER
ATOM 1 O3' C B 49 127.506 69.780 -11.665 1.00 71.55 O
ATOM 2 P U B 50 127.195 71.249 -11.098 1.00 73.03 P
ATOM 3 OP1 U B 50 127.336 72.162 -12.261 1.00 74.09 O
ATOM 4 OP2 U B 50 127.993 71.493 -9.866 1.00 72.83 O
ATOM 5 O5' U B 50 125.667 71.185 -10.643 1.00 72.08 O
ATOM 6 C5' U B 50 124.650 70.813 -11.557 1.00 70.28 C
ATOM 7 C4' U B 50 123.337 70.612 -10.832 1.00 70.48 C
ATOM 8 O4' U B 50 123.476 69.535 -9.864 1.00 70.43 O
ATOM 9 C3' U B 50 122.805 71.751 -9.976 1.00 68.99 C
ATOM 10 O3' U B 50 122.155 72.758 -10.725 1.00 69.10 O
ATOM 11 C2' U B 50 121.786 71.022 -9.118 1.00 68.53 C
ATOM 12 O2' U B 50 120.597 70.741 -9.835 1.00 66.51 O
ATOM 13 C1' U B 50 122.550 69.737 -8.798 1.00 68.59 C
ATOM 14 N1 U B 50 123.307 69.868 -7.545 1.00 67.32 N
ATOM 15 C2 U B 50 122.612 69.720 -6.359 1.00 66.06 C
ATOM 16 O2 U B 50 121.417 69.478 -6.317 1.00 65.59 O
ATOM 17 N3 U B 50 123.370 69.866 -5.224 1.00 65.03 N
ATOM 18 C4 U B 50 124.723 70.138 -5.155 1.00 64.73 C
ATOM 19 O4 U B 50 125.266 70.244 -4.054 1.00 63.55 O
ATOM 20 C5 U B 50 125.371 70.275 -6.425 1.00 65.51 C
ATOM 21 C6 U B 50 124.659 70.138 -7.548 1.00 66.53 C
ATOM 22 P C B 51 121.993 74.228 -10.096 1.00 69.33 P
ATOM 23 OP1 C B 51 121.491 75.075 -11.208 1.00 70.27 O
ATOM 24 OP2 C B 51 123.242 74.615 -9.378 1.00 67.87 O
ATOM 25 O5' C B 51 120.835 74.076 -9.011 1.00 68.25 O
TER
Atoms:
C4: (120.537,70.276,-3.002)
N3: (119.762,70.143,-4.135)
OP1: (115.943,72.052,2.486)
OP2: (115.639,69.651,3.373)
C2: (118.394,70.253,-4.220)
C1': (116.288,70.661,-3.055)
C3': (115.101,69.165,-1.651)
O5': (115.693,70.125,0.912)
O4': (115.861,71.342,-1.886)
C5': (114.705,70.867,0.213)
P: (116.190,70.590,2.351)
C4': (114.787,70.592,-1.267)
C2': (115.541,69.326,-3.103)
O2': (114.450,69.427,-3.992)
N1: (117.752,70.526,-3.025)
O4: (121.757,70.199,-3.092)
O2: (117.796,70.117,-5.272)
C6: (118.467,70.667,-1.859)
C5: (119.803,70.553,-1.808)
O3': (113.967,68.325,-1.501)
N3: (119.762,70.143,-4.135)
OP1: (115.943,72.052,2.486)
OP2: (115.639,69.651,3.373)
C2: (118.394,70.253,-4.220)
C1': (116.288,70.661,-3.055)
C3': (115.101,69.165,-1.651)
O5': (115.693,70.125,0.912)
O4': (115.861,71.342,-1.886)
C5': (114.705,70.867,0.213)
P: (116.190,70.590,2.351)
C4': (114.787,70.592,-1.267)
C2': (115.541,69.326,-3.103)
O2': (114.450,69.427,-3.992)
N1: (117.752,70.526,-3.025)
O4: (121.757,70.199,-3.092)
O2: (117.796,70.117,-5.272)
C6: (118.467,70.667,-1.859)
C5: (119.803,70.553,-1.808)
O3': (113.967,68.325,-1.501)
C4: (124.723,70.138,-5.155)
N3: (123.370,69.866,-5.224)
OP1: (127.336,72.162,-12.261)
OP2: (127.993,71.493,-9.866)
C2: (122.612,69.720,-6.359)
C1': (122.550,69.737,-8.798)
C3': (122.805,71.751,-9.976)
O5': (125.667,71.185,-10.643)
O4': (123.476,69.535,-9.864)
C5': (124.650,70.813,-11.557)
P: (127.195,71.249,-11.098)
C4': (123.337,70.612,-10.832)
C2': (121.786,71.022,-9.118)
O2': (120.597,70.741,-9.835)
N1: (123.307,69.868,-7.545)
O4: (125.266,70.244,-4.054)
O2: (121.417,69.478,-6.317)
C6: (124.659,70.138,-7.548)
C5: (125.371,70.275,-6.425)
O3': (122.155,72.758,-10.725)
N3: (123.370,69.866,-5.224)
OP1: (127.336,72.162,-12.261)
OP2: (127.993,71.493,-9.866)
C2: (122.612,69.720,-6.359)
C1': (122.550,69.737,-8.798)
C3': (122.805,71.751,-9.976)
O5': (125.667,71.185,-10.643)
O4': (123.476,69.535,-9.864)
C5': (124.650,70.813,-11.557)
P: (127.195,71.249,-11.098)
C4': (123.337,70.612,-10.832)
C2': (121.786,71.022,-9.118)
O2': (120.597,70.741,-9.835)
N1: (123.307,69.868,-7.545)
O4: (125.266,70.244,-4.054)
O2: (121.417,69.478,-6.317)
C6: (124.659,70.138,-7.548)
C5: (125.371,70.275,-6.425)
O3': (122.155,72.758,-10.725)
Image (generated by PyMOL):