Doublet info:
Details
Nucleotide types:
UU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YRJ:A5:B18
Extra
PDB:
ATOM 1 O3' G A 4 34.367 13.796 12.062 1.00 31.89 O
ATOM 2 P U A 5 34.121 12.434 12.874 1.00 33.65 P
ATOM 3 OP1 U A 5 33.780 12.823 14.254 1.00 35.63 O
ATOM 4 OP2 U A 5 35.244 11.475 12.617 1.00 33.84 O
ATOM 5 O5' U A 5 32.801 11.842 12.224 1.00 30.96 O
ATOM 6 C5' U A 5 31.602 12.577 12.256 1.00 31.59 C
ATOM 7 C4' U A 5 30.527 11.809 11.544 1.00 34.39 C
ATOM 8 O4' U A 5 30.854 11.659 10.132 1.00 32.56 O
ATOM 9 C3' U A 5 30.355 10.380 12.015 1.00 34.53 C
ATOM 10 O3' U A 5 29.689 10.351 13.272 1.00 33.64 O
ATOM 11 C2' U A 5 29.588 9.772 10.840 1.00 35.83 C
ATOM 12 O2' U A 5 28.204 10.052 10.767 1.00 39.57 O
ATOM 13 C1' U A 5 30.276 10.455 9.653 1.00 35.93 C
ATOM 14 N1 U A 5 31.331 9.581 9.119 1.00 37.12 N
ATOM 15 C2 U A 5 30.910 8.448 8.449 1.00 36.72 C
ATOM 16 O2 U A 5 29.729 8.200 8.248 1.00 36.39 O
ATOM 17 N3 U A 5 31.918 7.621 8.018 1.00 37.53 N
ATOM 18 C4 U A 5 33.276 7.820 8.167 1.00 34.79 C
ATOM 19 O4 U A 5 34.056 6.961 7.759 1.00 36.19 O
ATOM 20 C5 U A 5 33.631 9.022 8.847 1.00 31.26 C
ATOM 21 C6 U A 5 32.671 9.844 9.290 1.00 35.12 C
ATOM 22 P C A 6 30.147 9.305 14.409 1.00 35.95 P
ATOM 23 OP1 C A 6 29.395 9.641 15.640 1.00 37.97 O
ATOM 24 OP2 C A 6 31.615 9.158 14.491 1.00 33.84 O
ATOM 25 O5' C A 6 29.536 7.945 13.872 1.00 29.43 O
TER
ATOM 1 O3' G B 17 33.042 -0.464 1.263 1.00 33.22 O
ATOM 2 P U B 18 32.192 0.648 0.463 1.00 31.86 P
ATOM 3 OP1 U B 18 31.185 -0.159 -0.228 1.00 35.54 O
ATOM 4 OP2 U B 18 33.072 1.538 -0.331 1.00 30.23 O
ATOM 5 O5' U B 18 31.424 1.473 1.591 1.00 30.24 O
ATOM 6 C5' U B 18 30.280 0.913 2.222 1.00 28.75 C
ATOM 7 C4' U B 18 29.734 1.839 3.281 1.00 28.15 C
ATOM 8 O4' U B 18 30.675 1.980 4.375 1.00 28.33 O
ATOM 9 C3' U B 18 29.388 3.244 2.842 1.00 26.91 C
ATOM 10 O3' U B 18 28.039 3.224 2.433 1.00 29.95 O
ATOM 11 C2' U B 18 29.498 4.024 4.154 1.00 28.12 C
ATOM 12 O2' U B 18 28.386 3.930 5.007 1.00 28.58 O
ATOM 13 C1' U B 18 30.635 3.303 4.864 1.00 25.54 C
ATOM 14 N1 U B 18 31.927 3.932 4.590 1.00 23.62 N
ATOM 15 C2 U B 18 32.256 5.010 5.341 1.00 25.08 C
ATOM 16 O2 U B 18 31.491 5.502 6.153 1.00 26.15 O
ATOM 17 N3 U B 18 33.514 5.508 5.111 1.00 26.76 N
ATOM 18 C4 U B 18 34.431 5.035 4.208 1.00 22.65 C
ATOM 19 O4 U B 18 35.576 5.473 4.232 1.00 17.76 O
ATOM 20 C5 U B 18 33.969 3.935 3.425 1.00 23.45 C
ATOM 21 C6 U B 18 32.770 3.438 3.638 1.00 21.01 C
ATOM 22 P C B 19 27.589 3.890 1.037 1.00 37.47 P
ATOM 23 OP1 C B 19 26.206 3.338 0.919 1.00 37.61 O
ATOM 24 OP2 C B 19 28.559 3.726 -0.097 1.00 36.54 O
ATOM 25 O5' C B 19 27.511 5.452 1.302 1.00 35.30 O
TER
ATOM 2 P U A 5 34.121 12.434 12.874 1.00 33.65 P
ATOM 3 OP1 U A 5 33.780 12.823 14.254 1.00 35.63 O
ATOM 4 OP2 U A 5 35.244 11.475 12.617 1.00 33.84 O
ATOM 5 O5' U A 5 32.801 11.842 12.224 1.00 30.96 O
ATOM 6 C5' U A 5 31.602 12.577 12.256 1.00 31.59 C
ATOM 7 C4' U A 5 30.527 11.809 11.544 1.00 34.39 C
ATOM 8 O4' U A 5 30.854 11.659 10.132 1.00 32.56 O
ATOM 9 C3' U A 5 30.355 10.380 12.015 1.00 34.53 C
ATOM 10 O3' U A 5 29.689 10.351 13.272 1.00 33.64 O
ATOM 11 C2' U A 5 29.588 9.772 10.840 1.00 35.83 C
ATOM 12 O2' U A 5 28.204 10.052 10.767 1.00 39.57 O
ATOM 13 C1' U A 5 30.276 10.455 9.653 1.00 35.93 C
ATOM 14 N1 U A 5 31.331 9.581 9.119 1.00 37.12 N
ATOM 15 C2 U A 5 30.910 8.448 8.449 1.00 36.72 C
ATOM 16 O2 U A 5 29.729 8.200 8.248 1.00 36.39 O
ATOM 17 N3 U A 5 31.918 7.621 8.018 1.00 37.53 N
ATOM 18 C4 U A 5 33.276 7.820 8.167 1.00 34.79 C
ATOM 19 O4 U A 5 34.056 6.961 7.759 1.00 36.19 O
ATOM 20 C5 U A 5 33.631 9.022 8.847 1.00 31.26 C
ATOM 21 C6 U A 5 32.671 9.844 9.290 1.00 35.12 C
ATOM 22 P C A 6 30.147 9.305 14.409 1.00 35.95 P
ATOM 23 OP1 C A 6 29.395 9.641 15.640 1.00 37.97 O
ATOM 24 OP2 C A 6 31.615 9.158 14.491 1.00 33.84 O
ATOM 25 O5' C A 6 29.536 7.945 13.872 1.00 29.43 O
TER
ATOM 1 O3' G B 17 33.042 -0.464 1.263 1.00 33.22 O
ATOM 2 P U B 18 32.192 0.648 0.463 1.00 31.86 P
ATOM 3 OP1 U B 18 31.185 -0.159 -0.228 1.00 35.54 O
ATOM 4 OP2 U B 18 33.072 1.538 -0.331 1.00 30.23 O
ATOM 5 O5' U B 18 31.424 1.473 1.591 1.00 30.24 O
ATOM 6 C5' U B 18 30.280 0.913 2.222 1.00 28.75 C
ATOM 7 C4' U B 18 29.734 1.839 3.281 1.00 28.15 C
ATOM 8 O4' U B 18 30.675 1.980 4.375 1.00 28.33 O
ATOM 9 C3' U B 18 29.388 3.244 2.842 1.00 26.91 C
ATOM 10 O3' U B 18 28.039 3.224 2.433 1.00 29.95 O
ATOM 11 C2' U B 18 29.498 4.024 4.154 1.00 28.12 C
ATOM 12 O2' U B 18 28.386 3.930 5.007 1.00 28.58 O
ATOM 13 C1' U B 18 30.635 3.303 4.864 1.00 25.54 C
ATOM 14 N1 U B 18 31.927 3.932 4.590 1.00 23.62 N
ATOM 15 C2 U B 18 32.256 5.010 5.341 1.00 25.08 C
ATOM 16 O2 U B 18 31.491 5.502 6.153 1.00 26.15 O
ATOM 17 N3 U B 18 33.514 5.508 5.111 1.00 26.76 N
ATOM 18 C4 U B 18 34.431 5.035 4.208 1.00 22.65 C
ATOM 19 O4 U B 18 35.576 5.473 4.232 1.00 17.76 O
ATOM 20 C5 U B 18 33.969 3.935 3.425 1.00 23.45 C
ATOM 21 C6 U B 18 32.770 3.438 3.638 1.00 21.01 C
ATOM 22 P C B 19 27.589 3.890 1.037 1.00 37.47 P
ATOM 23 OP1 C B 19 26.206 3.338 0.919 1.00 37.61 O
ATOM 24 OP2 C B 19 28.559 3.726 -0.097 1.00 36.54 O
ATOM 25 O5' C B 19 27.511 5.452 1.302 1.00 35.30 O
TER
Atoms:
C4: (33.276,7.820,8.167)
N3: (31.918,7.621,8.018)
OP1: (33.780,12.823,14.254)
OP2: (35.244,11.475,12.617)
C2: (30.910,8.448,8.449)
C1': (30.276,10.455,9.653)
C3': (30.355,10.380,12.015)
O5': (32.801,11.842,12.224)
O4': (30.854,11.659,10.132)
C5': (31.602,12.577,12.256)
P: (34.121,12.434,12.874)
C4': (30.527,11.809,11.544)
C2': (29.588,9.772,10.840)
O2': (28.204,10.052,10.767)
N1: (31.331,9.581,9.119)
O4: (34.056,6.961,7.759)
O2: (29.729,8.200,8.248)
C6: (32.671,9.844,9.290)
C5: (33.631,9.022,8.847)
O3': (29.689,10.351,13.272)
N3: (31.918,7.621,8.018)
OP1: (33.780,12.823,14.254)
OP2: (35.244,11.475,12.617)
C2: (30.910,8.448,8.449)
C1': (30.276,10.455,9.653)
C3': (30.355,10.380,12.015)
O5': (32.801,11.842,12.224)
O4': (30.854,11.659,10.132)
C5': (31.602,12.577,12.256)
P: (34.121,12.434,12.874)
C4': (30.527,11.809,11.544)
C2': (29.588,9.772,10.840)
O2': (28.204,10.052,10.767)
N1: (31.331,9.581,9.119)
O4: (34.056,6.961,7.759)
O2: (29.729,8.200,8.248)
C6: (32.671,9.844,9.290)
C5: (33.631,9.022,8.847)
O3': (29.689,10.351,13.272)
C4: (34.431,5.035,4.208)
N3: (33.514,5.508,5.111)
OP1: (31.185,-0.159,-0.228)
OP2: (33.072,1.538,-0.331)
C2: (32.256,5.010,5.341)
C1': (30.635,3.303,4.864)
C3': (29.388,3.244,2.842)
O5': (31.424,1.473,1.591)
O4': (30.675,1.980,4.375)
C5': (30.280,0.913,2.222)
P: (32.192,0.648,0.463)
C4': (29.734,1.839,3.281)
C2': (29.498,4.024,4.154)
O2': (28.386,3.930,5.007)
N1: (31.927,3.932,4.590)
O4: (35.576,5.473,4.232)
O2: (31.491,5.502,6.153)
C6: (32.770,3.438,3.638)
C5: (33.969,3.935,3.425)
O3': (28.039,3.224,2.433)
N3: (33.514,5.508,5.111)
OP1: (31.185,-0.159,-0.228)
OP2: (33.072,1.538,-0.331)
C2: (32.256,5.010,5.341)
C1': (30.635,3.303,4.864)
C3': (29.388,3.244,2.842)
O5': (31.424,1.473,1.591)
O4': (30.675,1.980,4.375)
C5': (30.280,0.913,2.222)
P: (32.192,0.648,0.463)
C4': (29.734,1.839,3.281)
C2': (29.498,4.024,4.154)
O2': (28.386,3.930,5.007)
N1: (31.927,3.932,4.590)
O4: (35.576,5.473,4.232)
O2: (31.491,5.502,6.153)
C6: (32.770,3.438,3.638)
C5: (33.969,3.935,3.425)
O3': (28.039,3.224,2.433)
Image (generated by PyMOL):