Doublet info:
Details
Nucleotide types:
CU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YI2:01088:01087
Extra
PDB:
ATOM 1 O3' U A1087 45.071 105.513 117.238 1.00 43.92 O
ATOM 2 P C A1088 45.117 105.854 118.803 1.00 48.63 P
ATOM 3 OP1 C A1088 44.548 107.223 118.993 1.00 46.54 O
ATOM 4 OP2 C A1088 46.497 105.557 119.279 1.00 46.92 O
ATOM 5 O5' C A1088 44.139 104.774 119.455 1.00 47.98 O
ATOM 6 C5' C A1088 42.845 105.144 119.959 1.00 45.74 C
ATOM 7 C4' C A1088 42.171 103.947 120.582 1.00 47.31 C
ATOM 8 O4' C A1088 41.927 102.943 119.563 1.00 45.26 O
ATOM 9 C3' C A1088 42.974 103.206 121.637 1.00 48.52 C
ATOM 10 O3' C A1088 42.866 103.824 122.915 1.00 52.33 O
ATOM 11 C2' C A1088 42.300 101.841 121.636 1.00 48.94 C
ATOM 12 O2' C A1088 41.106 101.824 122.388 1.00 50.97 O
ATOM 13 C1' C A1088 41.978 101.655 120.148 1.00 45.34 C
ATOM 14 N1 C A1088 42.978 100.837 119.433 1.00 45.07 N
ATOM 15 C2 C A1088 43.080 99.476 119.753 1.00 45.23 C
ATOM 16 O2 C A1088 42.310 98.996 120.602 1.00 47.61 O
ATOM 17 N3 C A1088 44.010 98.718 119.135 1.00 44.52 N
ATOM 18 C4 C A1088 44.820 99.261 118.229 1.00 43.74 C
ATOM 19 N4 C A1088 45.741 98.471 117.666 1.00 40.62 N
ATOM 20 C5 C A1088 44.727 100.637 117.865 1.00 43.77 C
ATOM 21 C6 C A1088 43.801 101.382 118.486 1.00 44.02 C
ATOM 22 P U A1089 44.114 104.638 123.528 1.00 57.61 P
ATOM 23 OP1 U A1089 43.773 104.991 124.929 1.00 56.06 O
ATOM 24 OP2 U A1089 44.510 105.715 122.575 1.00 56.89 O
ATOM 25 O5' U A1089 45.289 103.572 123.580 1.00 59.61 O
TER
ATOM 1 O3' C B1086 49.723 101.350 115.027 1.00 42.51 O
ATOM 2 P U B1087 48.555 101.024 116.086 1.00 44.28 P
ATOM 3 OP1 U B1087 49.169 101.027 117.433 1.00 42.65 O
ATOM 4 OP2 U B1087 47.823 99.810 115.613 1.00 41.83 O
ATOM 5 O5' U B1087 47.587 102.282 116.000 1.00 41.41 O
ATOM 6 C5' U B1087 48.063 103.583 116.339 1.00 40.99 C
ATOM 7 C4' U B1087 46.985 104.606 116.111 1.00 42.74 C
ATOM 8 O4' U B1087 46.715 104.702 114.683 1.00 44.29 O
ATOM 9 C3' U B1087 45.643 104.306 116.776 1.00 43.36 C
ATOM 10 O3' U B1087 45.071 105.513 117.238 1.00 43.92 O
ATOM 11 C2' U B1087 44.804 103.781 115.618 1.00 44.43 C
ATOM 12 O2' U B1087 43.421 103.973 115.816 1.00 45.28 O
ATOM 13 C1' U B1087 45.320 104.657 114.482 1.00 43.72 C
ATOM 14 N1 U B1087 45.042 104.201 113.111 1.00 42.61 N
ATOM 15 C2 U B1087 44.492 105.126 112.241 1.00 42.33 C
ATOM 16 O2 U B1087 44.237 106.274 112.567 1.00 43.98 O
ATOM 17 N3 U B1087 44.249 104.663 110.974 1.00 41.53 N
ATOM 18 C4 U B1087 44.489 103.397 110.494 1.00 41.52 C
ATOM 19 O4 U B1087 44.228 103.142 109.318 1.00 40.84 O
ATOM 20 C5 U B1087 45.055 102.490 111.451 1.00 42.93 C
ATOM 21 C6 U B1087 45.308 102.914 112.697 1.00 43.04 C
ATOM 22 P C B1088 45.117 105.854 118.803 1.00 48.63 P
ATOM 23 OP1 C B1088 44.548 107.223 118.993 1.00 46.54 O
ATOM 24 OP2 C B1088 46.497 105.557 119.279 1.00 46.92 O
ATOM 25 O5' C B1088 44.139 104.774 119.455 1.00 47.98 O
TER
ATOM 2 P C A1088 45.117 105.854 118.803 1.00 48.63 P
ATOM 3 OP1 C A1088 44.548 107.223 118.993 1.00 46.54 O
ATOM 4 OP2 C A1088 46.497 105.557 119.279 1.00 46.92 O
ATOM 5 O5' C A1088 44.139 104.774 119.455 1.00 47.98 O
ATOM 6 C5' C A1088 42.845 105.144 119.959 1.00 45.74 C
ATOM 7 C4' C A1088 42.171 103.947 120.582 1.00 47.31 C
ATOM 8 O4' C A1088 41.927 102.943 119.563 1.00 45.26 O
ATOM 9 C3' C A1088 42.974 103.206 121.637 1.00 48.52 C
ATOM 10 O3' C A1088 42.866 103.824 122.915 1.00 52.33 O
ATOM 11 C2' C A1088 42.300 101.841 121.636 1.00 48.94 C
ATOM 12 O2' C A1088 41.106 101.824 122.388 1.00 50.97 O
ATOM 13 C1' C A1088 41.978 101.655 120.148 1.00 45.34 C
ATOM 14 N1 C A1088 42.978 100.837 119.433 1.00 45.07 N
ATOM 15 C2 C A1088 43.080 99.476 119.753 1.00 45.23 C
ATOM 16 O2 C A1088 42.310 98.996 120.602 1.00 47.61 O
ATOM 17 N3 C A1088 44.010 98.718 119.135 1.00 44.52 N
ATOM 18 C4 C A1088 44.820 99.261 118.229 1.00 43.74 C
ATOM 19 N4 C A1088 45.741 98.471 117.666 1.00 40.62 N
ATOM 20 C5 C A1088 44.727 100.637 117.865 1.00 43.77 C
ATOM 21 C6 C A1088 43.801 101.382 118.486 1.00 44.02 C
ATOM 22 P U A1089 44.114 104.638 123.528 1.00 57.61 P
ATOM 23 OP1 U A1089 43.773 104.991 124.929 1.00 56.06 O
ATOM 24 OP2 U A1089 44.510 105.715 122.575 1.00 56.89 O
ATOM 25 O5' U A1089 45.289 103.572 123.580 1.00 59.61 O
TER
ATOM 1 O3' C B1086 49.723 101.350 115.027 1.00 42.51 O
ATOM 2 P U B1087 48.555 101.024 116.086 1.00 44.28 P
ATOM 3 OP1 U B1087 49.169 101.027 117.433 1.00 42.65 O
ATOM 4 OP2 U B1087 47.823 99.810 115.613 1.00 41.83 O
ATOM 5 O5' U B1087 47.587 102.282 116.000 1.00 41.41 O
ATOM 6 C5' U B1087 48.063 103.583 116.339 1.00 40.99 C
ATOM 7 C4' U B1087 46.985 104.606 116.111 1.00 42.74 C
ATOM 8 O4' U B1087 46.715 104.702 114.683 1.00 44.29 O
ATOM 9 C3' U B1087 45.643 104.306 116.776 1.00 43.36 C
ATOM 10 O3' U B1087 45.071 105.513 117.238 1.00 43.92 O
ATOM 11 C2' U B1087 44.804 103.781 115.618 1.00 44.43 C
ATOM 12 O2' U B1087 43.421 103.973 115.816 1.00 45.28 O
ATOM 13 C1' U B1087 45.320 104.657 114.482 1.00 43.72 C
ATOM 14 N1 U B1087 45.042 104.201 113.111 1.00 42.61 N
ATOM 15 C2 U B1087 44.492 105.126 112.241 1.00 42.33 C
ATOM 16 O2 U B1087 44.237 106.274 112.567 1.00 43.98 O
ATOM 17 N3 U B1087 44.249 104.663 110.974 1.00 41.53 N
ATOM 18 C4 U B1087 44.489 103.397 110.494 1.00 41.52 C
ATOM 19 O4 U B1087 44.228 103.142 109.318 1.00 40.84 O
ATOM 20 C5 U B1087 45.055 102.490 111.451 1.00 42.93 C
ATOM 21 C6 U B1087 45.308 102.914 112.697 1.00 43.04 C
ATOM 22 P C B1088 45.117 105.854 118.803 1.00 48.63 P
ATOM 23 OP1 C B1088 44.548 107.223 118.993 1.00 46.54 O
ATOM 24 OP2 C B1088 46.497 105.557 119.279 1.00 46.92 O
ATOM 25 O5' C B1088 44.139 104.774 119.455 1.00 47.98 O
TER
Atoms:
C2: (43.080,99.476,119.753)
OP1: (44.548,107.223,118.993)
OP2: (46.497,105.557,119.279)
C4: (44.820,99.261,118.229)
O5': (44.139,104.774,119.455)
C3': (42.974,103.206,121.637)
C1': (41.978,101.655,120.148)
O4': (41.927,102.943,119.563)
C5': (42.845,105.144,119.959)
P: (45.117,105.854,118.803)
O2: (42.310,98.996,120.602)
C4': (42.171,103.947,120.582)
C2': (42.300,101.841,121.636)
O2': (41.106,101.824,122.388)
N1: (42.978,100.837,119.433)
N3: (44.010,98.718,119.135)
N4: (45.741,98.471,117.666)
C6: (43.801,101.382,118.486)
C5: (44.727,100.637,117.865)
O3': (42.866,103.824,122.915)
OP1: (44.548,107.223,118.993)
OP2: (46.497,105.557,119.279)
C4: (44.820,99.261,118.229)
O5': (44.139,104.774,119.455)
C3': (42.974,103.206,121.637)
C1': (41.978,101.655,120.148)
O4': (41.927,102.943,119.563)
C5': (42.845,105.144,119.959)
P: (45.117,105.854,118.803)
O2: (42.310,98.996,120.602)
C4': (42.171,103.947,120.582)
C2': (42.300,101.841,121.636)
O2': (41.106,101.824,122.388)
N1: (42.978,100.837,119.433)
N3: (44.010,98.718,119.135)
N4: (45.741,98.471,117.666)
C6: (43.801,101.382,118.486)
C5: (44.727,100.637,117.865)
O3': (42.866,103.824,122.915)
C4: (44.489,103.397,110.494)
N3: (44.249,104.663,110.974)
OP1: (49.169,101.027,117.433)
OP2: (47.823,99.810,115.613)
C2: (44.492,105.126,112.241)
C1': (45.320,104.657,114.482)
C3': (45.643,104.306,116.776)
O5': (47.587,102.282,116.000)
O4': (46.715,104.702,114.683)
C5': (48.063,103.583,116.339)
P: (48.555,101.024,116.086)
C4': (46.985,104.606,116.111)
C2': (44.804,103.781,115.618)
O2': (43.421,103.973,115.816)
N1: (45.042,104.201,113.111)
O4: (44.228,103.142,109.318)
O2: (44.237,106.274,112.567)
C6: (45.308,102.914,112.697)
C5: (45.055,102.490,111.451)
O3': (45.071,105.513,117.238)
N3: (44.249,104.663,110.974)
OP1: (49.169,101.027,117.433)
OP2: (47.823,99.810,115.613)
C2: (44.492,105.126,112.241)
C1': (45.320,104.657,114.482)
C3': (45.643,104.306,116.776)
O5': (47.587,102.282,116.000)
O4': (46.715,104.702,114.683)
C5': (48.063,103.583,116.339)
P: (48.555,101.024,116.086)
C4': (46.985,104.606,116.111)
C2': (44.804,103.781,115.618)
O2': (43.421,103.973,115.816)
N1: (45.042,104.201,113.111)
O4: (44.228,103.142,109.318)
O2: (44.237,106.274,112.567)
C6: (45.308,102.914,112.697)
C5: (45.055,102.490,111.451)
O3': (45.071,105.513,117.238)
Image (generated by PyMOL):