Doublet info:
Details
Nucleotide types:
CU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1K9M:A1088:A1087
Extra
PDB:
ATOM 1 O3' U A1087 45.011 105.428 117.628 1.00 40.60 O
ATOM 2 P C A1088 44.982 105.784 119.181 1.00 42.03 P
ATOM 3 OP1 C A1088 44.362 107.132 119.337 1.00 41.76 O
ATOM 4 OP2 C A1088 46.349 105.541 119.695 1.00 41.99 O
ATOM 5 O5' C A1088 44.001 104.693 119.807 1.00 41.09 O
ATOM 6 C5' C A1088 42.813 105.068 120.526 1.00 38.54 C
ATOM 7 C4' C A1088 42.169 103.853 121.138 1.00 39.27 C
ATOM 8 O4' C A1088 41.918 102.871 120.107 1.00 38.41 O
ATOM 9 C3' C A1088 43.029 103.105 122.136 1.00 41.19 C
ATOM 10 O3' C A1088 42.967 103.715 123.419 1.00 46.63 O
ATOM 11 C2' C A1088 42.374 101.728 122.140 1.00 40.79 C
ATOM 12 O2' C A1088 41.183 101.682 122.902 1.00 40.25 O
ATOM 13 C1' C A1088 42.008 101.566 120.662 1.00 38.08 C
ATOM 14 N1 C A1088 43.009 100.767 119.911 1.00 35.69 N
ATOM 15 C2 C A1088 43.099 99.403 120.180 1.00 33.89 C
ATOM 16 O2 C A1088 42.334 98.909 121.008 1.00 34.41 O
ATOM 17 N3 C A1088 44.013 98.656 119.531 1.00 33.05 N
ATOM 18 C4 C A1088 44.820 99.218 118.635 1.00 33.25 C
ATOM 19 N4 C A1088 45.709 98.436 118.028 1.00 31.53 N
ATOM 20 C5 C A1088 44.748 100.605 118.325 1.00 33.26 C
ATOM 21 C6 C A1088 43.836 101.337 118.981 1.00 34.39 C
ATOM 22 P U A1089 44.205 104.582 123.962 1.00 51.95 P
ATOM 23 OP1 U A1089 43.844 104.906 125.361 1.00 49.52 O
ATOM 24 OP2 U A1089 44.541 105.684 123.007 1.00 51.76 O
ATOM 25 O5' U A1089 45.413 103.553 124.000 1.00 54.45 O
TER
ATOM 1 O3' C B1086 49.553 101.155 115.441 1.00 35.66 O
ATOM 2 P U B1087 48.346 100.930 116.459 1.00 35.49 P
ATOM 3 OP1 U B1087 48.974 100.888 117.773 1.00 35.88 O
ATOM 4 OP2 U B1087 47.556 99.761 115.989 1.00 36.48 O
ATOM 5 O5' U B1087 47.481 102.257 116.318 1.00 36.26 O
ATOM 6 C5' U B1087 48.030 103.548 116.627 1.00 38.78 C
ATOM 7 C4' U B1087 46.956 104.603 116.518 1.00 40.98 C
ATOM 8 O4' U B1087 46.628 104.826 115.118 1.00 42.09 O
ATOM 9 C3' U B1087 45.642 104.239 117.194 1.00 40.93 C
ATOM 10 O3' U B1087 45.011 105.428 117.628 1.00 40.60 O
ATOM 11 C2' U B1087 44.840 103.654 116.038 1.00 42.16 C
ATOM 12 O2' U B1087 43.450 103.690 116.255 1.00 42.26 O
ATOM 13 C1' U B1087 45.248 104.606 114.921 1.00 43.18 C
ATOM 14 N1 U B1087 45.022 104.138 113.546 1.00 45.45 N
ATOM 15 C2 U B1087 44.445 105.038 112.665 1.00 46.22 C
ATOM 16 O2 U B1087 44.181 106.182 112.971 1.00 47.55 O
ATOM 17 N3 U B1087 44.196 104.545 111.412 1.00 45.47 N
ATOM 18 C4 U B1087 44.468 103.281 110.953 1.00 45.58 C
ATOM 19 O4 U B1087 44.254 103.018 109.775 1.00 44.43 O
ATOM 20 C5 U B1087 45.085 102.412 111.906 1.00 46.12 C
ATOM 21 C6 U B1087 45.344 102.859 113.138 1.00 45.95 C
ATOM 22 P C B1088 44.982 105.784 119.181 1.00 42.03 P
ATOM 23 OP1 C B1088 44.362 107.132 119.337 1.00 41.76 O
ATOM 24 OP2 C B1088 46.349 105.541 119.695 1.00 41.99 O
ATOM 25 O5' C B1088 44.001 104.693 119.807 1.00 41.09 O
TER
ATOM 2 P C A1088 44.982 105.784 119.181 1.00 42.03 P
ATOM 3 OP1 C A1088 44.362 107.132 119.337 1.00 41.76 O
ATOM 4 OP2 C A1088 46.349 105.541 119.695 1.00 41.99 O
ATOM 5 O5' C A1088 44.001 104.693 119.807 1.00 41.09 O
ATOM 6 C5' C A1088 42.813 105.068 120.526 1.00 38.54 C
ATOM 7 C4' C A1088 42.169 103.853 121.138 1.00 39.27 C
ATOM 8 O4' C A1088 41.918 102.871 120.107 1.00 38.41 O
ATOM 9 C3' C A1088 43.029 103.105 122.136 1.00 41.19 C
ATOM 10 O3' C A1088 42.967 103.715 123.419 1.00 46.63 O
ATOM 11 C2' C A1088 42.374 101.728 122.140 1.00 40.79 C
ATOM 12 O2' C A1088 41.183 101.682 122.902 1.00 40.25 O
ATOM 13 C1' C A1088 42.008 101.566 120.662 1.00 38.08 C
ATOM 14 N1 C A1088 43.009 100.767 119.911 1.00 35.69 N
ATOM 15 C2 C A1088 43.099 99.403 120.180 1.00 33.89 C
ATOM 16 O2 C A1088 42.334 98.909 121.008 1.00 34.41 O
ATOM 17 N3 C A1088 44.013 98.656 119.531 1.00 33.05 N
ATOM 18 C4 C A1088 44.820 99.218 118.635 1.00 33.25 C
ATOM 19 N4 C A1088 45.709 98.436 118.028 1.00 31.53 N
ATOM 20 C5 C A1088 44.748 100.605 118.325 1.00 33.26 C
ATOM 21 C6 C A1088 43.836 101.337 118.981 1.00 34.39 C
ATOM 22 P U A1089 44.205 104.582 123.962 1.00 51.95 P
ATOM 23 OP1 U A1089 43.844 104.906 125.361 1.00 49.52 O
ATOM 24 OP2 U A1089 44.541 105.684 123.007 1.00 51.76 O
ATOM 25 O5' U A1089 45.413 103.553 124.000 1.00 54.45 O
TER
ATOM 1 O3' C B1086 49.553 101.155 115.441 1.00 35.66 O
ATOM 2 P U B1087 48.346 100.930 116.459 1.00 35.49 P
ATOM 3 OP1 U B1087 48.974 100.888 117.773 1.00 35.88 O
ATOM 4 OP2 U B1087 47.556 99.761 115.989 1.00 36.48 O
ATOM 5 O5' U B1087 47.481 102.257 116.318 1.00 36.26 O
ATOM 6 C5' U B1087 48.030 103.548 116.627 1.00 38.78 C
ATOM 7 C4' U B1087 46.956 104.603 116.518 1.00 40.98 C
ATOM 8 O4' U B1087 46.628 104.826 115.118 1.00 42.09 O
ATOM 9 C3' U B1087 45.642 104.239 117.194 1.00 40.93 C
ATOM 10 O3' U B1087 45.011 105.428 117.628 1.00 40.60 O
ATOM 11 C2' U B1087 44.840 103.654 116.038 1.00 42.16 C
ATOM 12 O2' U B1087 43.450 103.690 116.255 1.00 42.26 O
ATOM 13 C1' U B1087 45.248 104.606 114.921 1.00 43.18 C
ATOM 14 N1 U B1087 45.022 104.138 113.546 1.00 45.45 N
ATOM 15 C2 U B1087 44.445 105.038 112.665 1.00 46.22 C
ATOM 16 O2 U B1087 44.181 106.182 112.971 1.00 47.55 O
ATOM 17 N3 U B1087 44.196 104.545 111.412 1.00 45.47 N
ATOM 18 C4 U B1087 44.468 103.281 110.953 1.00 45.58 C
ATOM 19 O4 U B1087 44.254 103.018 109.775 1.00 44.43 O
ATOM 20 C5 U B1087 45.085 102.412 111.906 1.00 46.12 C
ATOM 21 C6 U B1087 45.344 102.859 113.138 1.00 45.95 C
ATOM 22 P C B1088 44.982 105.784 119.181 1.00 42.03 P
ATOM 23 OP1 C B1088 44.362 107.132 119.337 1.00 41.76 O
ATOM 24 OP2 C B1088 46.349 105.541 119.695 1.00 41.99 O
ATOM 25 O5' C B1088 44.001 104.693 119.807 1.00 41.09 O
TER
Atoms:
C2: (43.099,99.403,120.180)
OP1: (44.362,107.132,119.337)
OP2: (46.349,105.541,119.695)
C4: (44.820,99.218,118.635)
O5': (44.001,104.693,119.807)
C3': (43.029,103.105,122.136)
C1': (42.008,101.566,120.662)
O4': (41.918,102.871,120.107)
C5': (42.813,105.068,120.526)
P: (44.982,105.784,119.181)
O2: (42.334,98.909,121.008)
C4': (42.169,103.853,121.138)
C2': (42.374,101.728,122.140)
O2': (41.183,101.682,122.902)
N1: (43.009,100.767,119.911)
N3: (44.013,98.656,119.531)
N4: (45.709,98.436,118.028)
C6: (43.836,101.337,118.981)
C5: (44.748,100.605,118.325)
O3': (42.967,103.715,123.419)
OP1: (44.362,107.132,119.337)
OP2: (46.349,105.541,119.695)
C4: (44.820,99.218,118.635)
O5': (44.001,104.693,119.807)
C3': (43.029,103.105,122.136)
C1': (42.008,101.566,120.662)
O4': (41.918,102.871,120.107)
C5': (42.813,105.068,120.526)
P: (44.982,105.784,119.181)
O2: (42.334,98.909,121.008)
C4': (42.169,103.853,121.138)
C2': (42.374,101.728,122.140)
O2': (41.183,101.682,122.902)
N1: (43.009,100.767,119.911)
N3: (44.013,98.656,119.531)
N4: (45.709,98.436,118.028)
C6: (43.836,101.337,118.981)
C5: (44.748,100.605,118.325)
O3': (42.967,103.715,123.419)
C4: (44.468,103.281,110.953)
N3: (44.196,104.545,111.412)
OP1: (48.974,100.888,117.773)
OP2: (47.556,99.761,115.989)
C2: (44.445,105.038,112.665)
C1': (45.248,104.606,114.921)
C3': (45.642,104.239,117.194)
O5': (47.481,102.257,116.318)
O4': (46.628,104.826,115.118)
C5': (48.030,103.548,116.627)
P: (48.346,100.930,116.459)
C4': (46.956,104.603,116.518)
C2': (44.840,103.654,116.038)
O2': (43.450,103.690,116.255)
N1: (45.022,104.138,113.546)
O4: (44.254,103.018,109.775)
O2: (44.181,106.182,112.971)
C6: (45.344,102.859,113.138)
C5: (45.085,102.412,111.906)
O3': (45.011,105.428,117.628)
N3: (44.196,104.545,111.412)
OP1: (48.974,100.888,117.773)
OP2: (47.556,99.761,115.989)
C2: (44.445,105.038,112.665)
C1': (45.248,104.606,114.921)
C3': (45.642,104.239,117.194)
O5': (47.481,102.257,116.318)
O4': (46.628,104.826,115.118)
C5': (48.030,103.548,116.627)
P: (48.346,100.930,116.459)
C4': (46.956,104.603,116.518)
C2': (44.840,103.654,116.038)
O2': (43.450,103.690,116.255)
N1: (45.022,104.138,113.546)
O4: (44.254,103.018,109.775)
O2: (44.181,106.182,112.971)
C6: (45.344,102.859,113.138)
C5: (45.085,102.412,111.906)
O3': (45.011,105.428,117.628)
Image (generated by PyMOL):