Doublet info:
Details
Nucleotide types:
CU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:02023:02022
Extra
PDB:
ATOM 1 O3' U A2022 35.224 121.887 104.119 1.00 34.19 O
ATOM 2 P C A2023 34.321 120.997 105.096 1.00 33.78 P
ATOM 3 OP1 C A2023 32.970 120.948 104.485 1.00 32.50 O
ATOM 4 OP2 C A2023 34.486 121.549 106.466 1.00 31.15 O
ATOM 5 O5' C A2023 34.996 119.554 105.043 1.00 29.84 O
ATOM 6 C5' C A2023 34.583 118.573 104.064 1.00 31.19 C
ATOM 7 C4' C A2023 34.925 117.178 104.543 1.00 30.69 C
ATOM 8 O4' C A2023 36.357 116.976 104.508 1.00 30.77 O
ATOM 9 C3' C A2023 34.505 116.895 105.972 1.00 31.81 C
ATOM 10 O3' C A2023 33.165 116.418 105.988 1.00 30.46 O
ATOM 11 C2' C A2023 35.526 115.865 106.442 1.00 31.20 C
ATOM 12 O2' C A2023 35.208 114.548 106.050 1.00 31.09 O
ATOM 13 C1' C A2023 36.778 116.309 105.680 1.00 31.74 C
ATOM 14 N1 C A2023 37.708 117.201 106.399 1.00 32.91 N
ATOM 15 C2 C A2023 38.508 116.674 107.422 1.00 32.78 C
ATOM 16 O2 C A2023 38.355 115.494 107.759 1.00 31.85 O
ATOM 17 N3 C A2023 39.420 117.474 108.024 1.00 32.77 N
ATOM 18 C4 C A2023 39.531 118.753 107.658 1.00 32.32 C
ATOM 19 N4 C A2023 40.450 119.500 108.263 1.00 32.23 N
ATOM 20 C5 C A2023 38.704 119.323 106.650 1.00 33.40 C
ATOM 21 C6 C A2023 37.815 118.522 106.054 1.00 32.98 C
ATOM 22 P U A2024 32.159 116.912 107.131 1.00 33.51 P
ATOM 23 OP1 U A2024 30.851 116.259 106.850 1.00 32.17 O
ATOM 24 OP2 U A2024 32.235 118.394 107.242 1.00 31.64 O
ATOM 25 O5' U A2024 32.763 116.276 108.458 1.00 31.02 O
TER
ATOM 1 O3' G B2021 40.370 124.635 107.326 1.00 31.31 O
ATOM 2 P U B2022 40.151 123.140 106.805 1.00 32.25 P
ATOM 3 OP1 U B2022 39.694 122.378 107.984 1.00 33.82 O
ATOM 4 OP2 U B2022 41.373 122.718 106.078 1.00 32.60 O
ATOM 5 O5' U B2022 38.955 123.237 105.757 1.00 31.90 O
ATOM 6 C5' U B2022 37.673 123.750 106.141 1.00 32.11 C
ATOM 7 C4' U B2022 36.683 123.570 105.019 1.00 33.71 C
ATOM 8 O4' U B2022 37.059 124.412 103.890 1.00 35.15 O
ATOM 9 C3' U B2022 36.568 122.151 104.469 1.00 35.48 C
ATOM 10 O3' U B2022 35.224 121.887 104.119 1.00 34.19 O
ATOM 11 C2' U B2022 37.431 122.200 103.213 1.00 36.54 C
ATOM 12 O2' U B2022 37.084 121.256 102.215 1.00 40.11 O
ATOM 13 C1' U B2022 37.168 123.620 102.722 1.00 33.25 C
ATOM 14 N1 U B2022 38.278 124.118 101.900 1.00 32.94 N
ATOM 15 C2 U B2022 38.030 124.377 100.559 1.00 31.27 C
ATOM 16 O2 U B2022 36.936 124.278 100.053 1.00 29.28 O
ATOM 17 N3 U B2022 39.126 124.763 99.834 1.00 30.95 N
ATOM 18 C4 U B2022 40.414 124.922 100.298 1.00 30.49 C
ATOM 19 O4 U B2022 41.313 125.148 99.494 1.00 32.15 O
ATOM 20 C5 U B2022 40.584 124.681 101.698 1.00 28.77 C
ATOM 21 C6 U B2022 39.540 124.298 102.433 1.00 31.86 C
ATOM 22 P C B2023 34.321 120.997 105.096 1.00 33.78 P
ATOM 23 OP1 C B2023 32.970 120.948 104.485 1.00 32.50 O
ATOM 24 OP2 C B2023 34.486 121.549 106.466 1.00 31.15 O
ATOM 25 O5' C B2023 34.996 119.554 105.043 1.00 29.84 O
TER
ATOM 2 P C A2023 34.321 120.997 105.096 1.00 33.78 P
ATOM 3 OP1 C A2023 32.970 120.948 104.485 1.00 32.50 O
ATOM 4 OP2 C A2023 34.486 121.549 106.466 1.00 31.15 O
ATOM 5 O5' C A2023 34.996 119.554 105.043 1.00 29.84 O
ATOM 6 C5' C A2023 34.583 118.573 104.064 1.00 31.19 C
ATOM 7 C4' C A2023 34.925 117.178 104.543 1.00 30.69 C
ATOM 8 O4' C A2023 36.357 116.976 104.508 1.00 30.77 O
ATOM 9 C3' C A2023 34.505 116.895 105.972 1.00 31.81 C
ATOM 10 O3' C A2023 33.165 116.418 105.988 1.00 30.46 O
ATOM 11 C2' C A2023 35.526 115.865 106.442 1.00 31.20 C
ATOM 12 O2' C A2023 35.208 114.548 106.050 1.00 31.09 O
ATOM 13 C1' C A2023 36.778 116.309 105.680 1.00 31.74 C
ATOM 14 N1 C A2023 37.708 117.201 106.399 1.00 32.91 N
ATOM 15 C2 C A2023 38.508 116.674 107.422 1.00 32.78 C
ATOM 16 O2 C A2023 38.355 115.494 107.759 1.00 31.85 O
ATOM 17 N3 C A2023 39.420 117.474 108.024 1.00 32.77 N
ATOM 18 C4 C A2023 39.531 118.753 107.658 1.00 32.32 C
ATOM 19 N4 C A2023 40.450 119.500 108.263 1.00 32.23 N
ATOM 20 C5 C A2023 38.704 119.323 106.650 1.00 33.40 C
ATOM 21 C6 C A2023 37.815 118.522 106.054 1.00 32.98 C
ATOM 22 P U A2024 32.159 116.912 107.131 1.00 33.51 P
ATOM 23 OP1 U A2024 30.851 116.259 106.850 1.00 32.17 O
ATOM 24 OP2 U A2024 32.235 118.394 107.242 1.00 31.64 O
ATOM 25 O5' U A2024 32.763 116.276 108.458 1.00 31.02 O
TER
ATOM 1 O3' G B2021 40.370 124.635 107.326 1.00 31.31 O
ATOM 2 P U B2022 40.151 123.140 106.805 1.00 32.25 P
ATOM 3 OP1 U B2022 39.694 122.378 107.984 1.00 33.82 O
ATOM 4 OP2 U B2022 41.373 122.718 106.078 1.00 32.60 O
ATOM 5 O5' U B2022 38.955 123.237 105.757 1.00 31.90 O
ATOM 6 C5' U B2022 37.673 123.750 106.141 1.00 32.11 C
ATOM 7 C4' U B2022 36.683 123.570 105.019 1.00 33.71 C
ATOM 8 O4' U B2022 37.059 124.412 103.890 1.00 35.15 O
ATOM 9 C3' U B2022 36.568 122.151 104.469 1.00 35.48 C
ATOM 10 O3' U B2022 35.224 121.887 104.119 1.00 34.19 O
ATOM 11 C2' U B2022 37.431 122.200 103.213 1.00 36.54 C
ATOM 12 O2' U B2022 37.084 121.256 102.215 1.00 40.11 O
ATOM 13 C1' U B2022 37.168 123.620 102.722 1.00 33.25 C
ATOM 14 N1 U B2022 38.278 124.118 101.900 1.00 32.94 N
ATOM 15 C2 U B2022 38.030 124.377 100.559 1.00 31.27 C
ATOM 16 O2 U B2022 36.936 124.278 100.053 1.00 29.28 O
ATOM 17 N3 U B2022 39.126 124.763 99.834 1.00 30.95 N
ATOM 18 C4 U B2022 40.414 124.922 100.298 1.00 30.49 C
ATOM 19 O4 U B2022 41.313 125.148 99.494 1.00 32.15 O
ATOM 20 C5 U B2022 40.584 124.681 101.698 1.00 28.77 C
ATOM 21 C6 U B2022 39.540 124.298 102.433 1.00 31.86 C
ATOM 22 P C B2023 34.321 120.997 105.096 1.00 33.78 P
ATOM 23 OP1 C B2023 32.970 120.948 104.485 1.00 32.50 O
ATOM 24 OP2 C B2023 34.486 121.549 106.466 1.00 31.15 O
ATOM 25 O5' C B2023 34.996 119.554 105.043 1.00 29.84 O
TER
Atoms:
C2: (38.508,116.674,107.422)
OP1: (32.970,120.948,104.485)
OP2: (34.486,121.549,106.466)
C4: (39.531,118.753,107.658)
O5': (34.996,119.554,105.043)
C3': (34.505,116.895,105.972)
C1': (36.778,116.309,105.680)
O4': (36.357,116.976,104.508)
C5': (34.583,118.573,104.064)
P: (34.321,120.997,105.096)
O2: (38.355,115.494,107.759)
C4': (34.925,117.178,104.543)
C2': (35.526,115.865,106.442)
O2': (35.208,114.548,106.050)
N1: (37.708,117.201,106.399)
N3: (39.420,117.474,108.024)
N4: (40.450,119.500,108.263)
C6: (37.815,118.522,106.054)
C5: (38.704,119.323,106.650)
O3': (33.165,116.418,105.988)
OP1: (32.970,120.948,104.485)
OP2: (34.486,121.549,106.466)
C4: (39.531,118.753,107.658)
O5': (34.996,119.554,105.043)
C3': (34.505,116.895,105.972)
C1': (36.778,116.309,105.680)
O4': (36.357,116.976,104.508)
C5': (34.583,118.573,104.064)
P: (34.321,120.997,105.096)
O2: (38.355,115.494,107.759)
C4': (34.925,117.178,104.543)
C2': (35.526,115.865,106.442)
O2': (35.208,114.548,106.050)
N1: (37.708,117.201,106.399)
N3: (39.420,117.474,108.024)
N4: (40.450,119.500,108.263)
C6: (37.815,118.522,106.054)
C5: (38.704,119.323,106.650)
O3': (33.165,116.418,105.988)
C4: (40.414,124.922,100.298)
N3: (39.126,124.763,99.834)
OP1: (39.694,122.378,107.984)
OP2: (41.373,122.718,106.078)
C2: (38.030,124.377,100.559)
C1': (37.168,123.620,102.722)
C3': (36.568,122.151,104.469)
O5': (38.955,123.237,105.757)
O4': (37.059,124.412,103.890)
C5': (37.673,123.750,106.141)
P: (40.151,123.140,106.805)
C4': (36.683,123.570,105.019)
C2': (37.431,122.200,103.213)
O2': (37.084,121.256,102.215)
N1: (38.278,124.118,101.900)
O4: (41.313,125.148,99.494)
O2: (36.936,124.278,100.053)
C6: (39.540,124.298,102.433)
C5: (40.584,124.681,101.698)
O3': (35.224,121.887,104.119)
N3: (39.126,124.763,99.834)
OP1: (39.694,122.378,107.984)
OP2: (41.373,122.718,106.078)
C2: (38.030,124.377,100.559)
C1': (37.168,123.620,102.722)
C3': (36.568,122.151,104.469)
O5': (38.955,123.237,105.757)
O4': (37.059,124.412,103.890)
C5': (37.673,123.750,106.141)
P: (40.151,123.140,106.805)
C4': (36.683,123.570,105.019)
C2': (37.431,122.200,103.213)
O2': (37.084,121.256,102.215)
N1: (38.278,124.118,101.900)
O4: (41.313,125.148,99.494)
O2: (36.936,124.278,100.053)
C6: (39.540,124.298,102.433)
C5: (40.584,124.681,101.698)
O3': (35.224,121.887,104.119)
Image (generated by PyMOL):