Doublet info:
Details
Nucleotide types:
CU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1VQN:02023:02022
Extra
PDB:
ATOM 1 O3' U A2022 35.301 120.845 104.225 1.00 43.20 O
ATOM 2 P C A2023 34.396 119.917 105.176 1.00 41.77 P
ATOM 3 OP1 C A2023 33.031 119.887 104.602 1.00 41.61 O
ATOM 4 OP2 C A2023 34.593 120.399 106.560 1.00 44.23 O
ATOM 5 O5' C A2023 35.054 118.465 105.092 1.00 38.99 O
ATOM 6 C5' C A2023 34.468 117.418 104.295 1.00 38.29 C
ATOM 7 C4' C A2023 34.896 116.061 104.810 1.00 36.15 C
ATOM 8 O4' C A2023 36.334 115.904 104.690 1.00 34.80 O
ATOM 9 C3' C A2023 34.596 115.834 106.278 1.00 37.03 C
ATOM 10 O3' C A2023 33.275 115.344 106.419 1.00 37.96 O
ATOM 11 C2' C A2023 35.642 114.804 106.683 1.00 37.92 C
ATOM 12 O2' C A2023 35.290 113.484 106.327 1.00 38.96 O
ATOM 13 C1' C A2023 36.842 115.240 105.836 1.00 36.89 C
ATOM 14 N1 C A2023 37.769 116.160 106.525 1.00 38.79 N
ATOM 15 C2 C A2023 38.612 115.663 107.537 1.00 39.58 C
ATOM 16 O2 C A2023 38.510 114.472 107.888 1.00 37.08 O
ATOM 17 N3 C A2023 39.507 116.502 108.112 1.00 39.95 N
ATOM 18 C4 C A2023 39.556 117.782 107.738 1.00 39.45 C
ATOM 19 N4 C A2023 40.455 118.573 108.324 1.00 40.59 N
ATOM 20 C5 C A2023 38.690 118.312 106.746 1.00 38.46 C
ATOM 21 C6 C A2023 37.825 117.480 106.171 1.00 37.51 C
ATOM 22 P U A2024 32.270 116.040 107.459 1.00 40.06 P
ATOM 23 OP1 U A2024 30.908 115.592 107.073 1.00 41.03 O
ATOM 24 OP2 U A2024 32.573 117.497 107.551 1.00 41.05 O
ATOM 25 O5' U A2024 32.644 115.374 108.851 1.00 39.17 O
TER
ATOM 1 O3' G B2021 40.366 123.627 107.474 1.00 39.02 O
ATOM 2 P U B2022 40.225 122.121 106.933 1.00 39.27 P
ATOM 3 OP1 U B2022 39.824 121.260 108.057 1.00 40.42 O
ATOM 4 OP2 U B2022 41.444 121.793 106.170 1.00 40.31 O
ATOM 5 O5' U B2022 39.022 122.184 105.896 1.00 39.59 O
ATOM 6 C5' U B2022 37.751 122.723 106.267 1.00 39.12 C
ATOM 7 C4' U B2022 36.762 122.540 105.142 1.00 40.97 C
ATOM 8 O4' U B2022 37.144 123.391 104.022 1.00 41.05 O
ATOM 9 C3' U B2022 36.650 121.119 104.587 1.00 41.59 C
ATOM 10 O3' U B2022 35.301 120.845 104.225 1.00 43.20 O
ATOM 11 C2' U B2022 37.527 121.176 103.337 1.00 41.24 C
ATOM 12 O2' U B2022 37.163 120.277 102.312 1.00 40.11 O
ATOM 13 C1' U B2022 37.278 122.600 102.855 1.00 41.02 C
ATOM 14 N1 U B2022 38.388 123.113 102.037 1.00 40.43 N
ATOM 15 C2 U B2022 38.121 123.414 100.708 1.00 40.35 C
ATOM 16 O2 U B2022 37.021 123.309 100.216 1.00 38.74 O
ATOM 17 N3 U B2022 39.205 123.837 99.976 1.00 41.00 N
ATOM 18 C4 U B2022 40.500 123.989 100.422 1.00 38.48 C
ATOM 19 O4 U B2022 41.368 124.350 99.629 1.00 38.23 O
ATOM 20 C5 U B2022 40.695 123.696 101.812 1.00 38.14 C
ATOM 21 C6 U B2022 39.658 123.281 102.555 1.00 38.46 C
ATOM 22 P C B2023 34.396 119.917 105.176 1.00 41.77 P
ATOM 23 OP1 C B2023 33.031 119.887 104.602 1.00 41.61 O
ATOM 24 OP2 C B2023 34.593 120.399 106.560 1.00 44.23 O
ATOM 25 O5' C B2023 35.054 118.465 105.092 1.00 38.99 O
TER
ATOM 2 P C A2023 34.396 119.917 105.176 1.00 41.77 P
ATOM 3 OP1 C A2023 33.031 119.887 104.602 1.00 41.61 O
ATOM 4 OP2 C A2023 34.593 120.399 106.560 1.00 44.23 O
ATOM 5 O5' C A2023 35.054 118.465 105.092 1.00 38.99 O
ATOM 6 C5' C A2023 34.468 117.418 104.295 1.00 38.29 C
ATOM 7 C4' C A2023 34.896 116.061 104.810 1.00 36.15 C
ATOM 8 O4' C A2023 36.334 115.904 104.690 1.00 34.80 O
ATOM 9 C3' C A2023 34.596 115.834 106.278 1.00 37.03 C
ATOM 10 O3' C A2023 33.275 115.344 106.419 1.00 37.96 O
ATOM 11 C2' C A2023 35.642 114.804 106.683 1.00 37.92 C
ATOM 12 O2' C A2023 35.290 113.484 106.327 1.00 38.96 O
ATOM 13 C1' C A2023 36.842 115.240 105.836 1.00 36.89 C
ATOM 14 N1 C A2023 37.769 116.160 106.525 1.00 38.79 N
ATOM 15 C2 C A2023 38.612 115.663 107.537 1.00 39.58 C
ATOM 16 O2 C A2023 38.510 114.472 107.888 1.00 37.08 O
ATOM 17 N3 C A2023 39.507 116.502 108.112 1.00 39.95 N
ATOM 18 C4 C A2023 39.556 117.782 107.738 1.00 39.45 C
ATOM 19 N4 C A2023 40.455 118.573 108.324 1.00 40.59 N
ATOM 20 C5 C A2023 38.690 118.312 106.746 1.00 38.46 C
ATOM 21 C6 C A2023 37.825 117.480 106.171 1.00 37.51 C
ATOM 22 P U A2024 32.270 116.040 107.459 1.00 40.06 P
ATOM 23 OP1 U A2024 30.908 115.592 107.073 1.00 41.03 O
ATOM 24 OP2 U A2024 32.573 117.497 107.551 1.00 41.05 O
ATOM 25 O5' U A2024 32.644 115.374 108.851 1.00 39.17 O
TER
ATOM 1 O3' G B2021 40.366 123.627 107.474 1.00 39.02 O
ATOM 2 P U B2022 40.225 122.121 106.933 1.00 39.27 P
ATOM 3 OP1 U B2022 39.824 121.260 108.057 1.00 40.42 O
ATOM 4 OP2 U B2022 41.444 121.793 106.170 1.00 40.31 O
ATOM 5 O5' U B2022 39.022 122.184 105.896 1.00 39.59 O
ATOM 6 C5' U B2022 37.751 122.723 106.267 1.00 39.12 C
ATOM 7 C4' U B2022 36.762 122.540 105.142 1.00 40.97 C
ATOM 8 O4' U B2022 37.144 123.391 104.022 1.00 41.05 O
ATOM 9 C3' U B2022 36.650 121.119 104.587 1.00 41.59 C
ATOM 10 O3' U B2022 35.301 120.845 104.225 1.00 43.20 O
ATOM 11 C2' U B2022 37.527 121.176 103.337 1.00 41.24 C
ATOM 12 O2' U B2022 37.163 120.277 102.312 1.00 40.11 O
ATOM 13 C1' U B2022 37.278 122.600 102.855 1.00 41.02 C
ATOM 14 N1 U B2022 38.388 123.113 102.037 1.00 40.43 N
ATOM 15 C2 U B2022 38.121 123.414 100.708 1.00 40.35 C
ATOM 16 O2 U B2022 37.021 123.309 100.216 1.00 38.74 O
ATOM 17 N3 U B2022 39.205 123.837 99.976 1.00 41.00 N
ATOM 18 C4 U B2022 40.500 123.989 100.422 1.00 38.48 C
ATOM 19 O4 U B2022 41.368 124.350 99.629 1.00 38.23 O
ATOM 20 C5 U B2022 40.695 123.696 101.812 1.00 38.14 C
ATOM 21 C6 U B2022 39.658 123.281 102.555 1.00 38.46 C
ATOM 22 P C B2023 34.396 119.917 105.176 1.00 41.77 P
ATOM 23 OP1 C B2023 33.031 119.887 104.602 1.00 41.61 O
ATOM 24 OP2 C B2023 34.593 120.399 106.560 1.00 44.23 O
ATOM 25 O5' C B2023 35.054 118.465 105.092 1.00 38.99 O
TER
Atoms:
C2: (38.612,115.663,107.537)
OP1: (33.031,119.887,104.602)
OP2: (34.593,120.399,106.560)
C4: (39.556,117.782,107.738)
O5': (35.054,118.465,105.092)
C3': (34.596,115.834,106.278)
C1': (36.842,115.240,105.836)
O4': (36.334,115.904,104.690)
C5': (34.468,117.418,104.295)
P: (34.396,119.917,105.176)
O2: (38.510,114.472,107.888)
C4': (34.896,116.061,104.810)
C2': (35.642,114.804,106.683)
O2': (35.290,113.484,106.327)
N1: (37.769,116.160,106.525)
N3: (39.507,116.502,108.112)
N4: (40.455,118.573,108.324)
C6: (37.825,117.480,106.171)
C5: (38.690,118.312,106.746)
O3': (33.275,115.344,106.419)
OP1: (33.031,119.887,104.602)
OP2: (34.593,120.399,106.560)
C4: (39.556,117.782,107.738)
O5': (35.054,118.465,105.092)
C3': (34.596,115.834,106.278)
C1': (36.842,115.240,105.836)
O4': (36.334,115.904,104.690)
C5': (34.468,117.418,104.295)
P: (34.396,119.917,105.176)
O2: (38.510,114.472,107.888)
C4': (34.896,116.061,104.810)
C2': (35.642,114.804,106.683)
O2': (35.290,113.484,106.327)
N1: (37.769,116.160,106.525)
N3: (39.507,116.502,108.112)
N4: (40.455,118.573,108.324)
C6: (37.825,117.480,106.171)
C5: (38.690,118.312,106.746)
O3': (33.275,115.344,106.419)
C4: (40.500,123.989,100.422)
N3: (39.205,123.837,99.976)
OP1: (39.824,121.260,108.057)
OP2: (41.444,121.793,106.170)
C2: (38.121,123.414,100.708)
C1': (37.278,122.600,102.855)
C3': (36.650,121.119,104.587)
O5': (39.022,122.184,105.896)
O4': (37.144,123.391,104.022)
C5': (37.751,122.723,106.267)
P: (40.225,122.121,106.933)
C4': (36.762,122.540,105.142)
C2': (37.527,121.176,103.337)
O2': (37.163,120.277,102.312)
N1: (38.388,123.113,102.037)
O4: (41.368,124.350,99.629)
O2: (37.021,123.309,100.216)
C6: (39.658,123.281,102.555)
C5: (40.695,123.696,101.812)
O3': (35.301,120.845,104.225)
N3: (39.205,123.837,99.976)
OP1: (39.824,121.260,108.057)
OP2: (41.444,121.793,106.170)
C2: (38.121,123.414,100.708)
C1': (37.278,122.600,102.855)
C3': (36.650,121.119,104.587)
O5': (39.022,122.184,105.896)
O4': (37.144,123.391,104.022)
C5': (37.751,122.723,106.267)
P: (40.225,122.121,106.933)
C4': (36.762,122.540,105.142)
C2': (37.527,121.176,103.337)
O2': (37.163,120.277,102.312)
N1: (38.388,123.113,102.037)
O4: (41.368,124.350,99.629)
O2: (37.021,123.309,100.216)
C6: (39.658,123.281,102.555)
C5: (40.695,123.696,101.812)
O3': (35.301,120.845,104.225)
Image (generated by PyMOL):