Doublet info:
Details
Nucleotide types:
CU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1VQN:01088:01087
Extra
PDB:
ATOM 1 O3' U A1087 44.785 104.696 117.416 1.00 53.35 O
ATOM 2 P C A1088 44.839 104.947 119.000 1.00 55.81 P
ATOM 3 OP1 C A1088 44.225 106.281 119.288 1.00 55.68 O
ATOM 4 OP2 C A1088 46.234 104.671 119.445 1.00 55.42 O
ATOM 5 O5' C A1088 43.903 103.800 119.591 1.00 54.85 O
ATOM 6 C5' C A1088 42.621 104.108 120.170 1.00 55.42 C
ATOM 7 C4' C A1088 42.044 102.882 120.839 1.00 56.17 C
ATOM 8 O4' C A1088 41.830 101.851 119.839 1.00 54.71 O
ATOM 9 C3' C A1088 42.941 102.222 121.876 1.00 56.97 C
ATOM 10 O3' C A1088 42.821 102.845 123.156 1.00 55.33 O
ATOM 11 C2' C A1088 42.415 100.792 121.894 1.00 57.02 C
ATOM 12 O2' C A1088 41.255 100.651 122.693 1.00 58.44 O
ATOM 13 C1' C A1088 42.063 100.576 120.416 1.00 55.53 C
ATOM 14 N1 C A1088 43.106 99.880 119.633 1.00 55.43 N
ATOM 15 C2 C A1088 43.382 98.535 119.921 1.00 54.93 C
ATOM 16 O2 C A1088 42.745 97.970 120.817 1.00 59.28 O
ATOM 17 N3 C A1088 44.334 97.887 119.216 1.00 53.32 N
ATOM 18 C4 C A1088 45.002 98.523 118.256 1.00 52.34 C
ATOM 19 N4 C A1088 45.935 97.841 117.594 1.00 49.39 N
ATOM 20 C5 C A1088 44.743 99.888 117.934 1.00 53.39 C
ATOM 21 C6 C A1088 43.797 100.523 118.642 1.00 54.89 C
ATOM 22 P U A1089 44.038 103.724 123.741 1.00 57.81 P
ATOM 23 OP1 U A1089 43.636 104.193 125.093 1.00 57.73 O
ATOM 24 OP2 U A1089 44.398 104.723 122.692 1.00 56.50 O
ATOM 25 O5' U A1089 45.250 102.698 123.900 1.00 55.30 O
TER
ATOM 1 O3' C B1086 49.629 100.793 115.066 1.00 50.91 O
ATOM 2 P U B1087 48.446 100.410 116.089 1.00 50.85 P
ATOM 3 OP1 U B1087 49.050 100.384 117.443 1.00 51.43 O
ATOM 4 OP2 U B1087 47.729 99.210 115.587 1.00 47.73 O
ATOM 5 O5' U B1087 47.441 101.640 116.012 1.00 50.82 O
ATOM 6 C5' U B1087 47.857 102.957 116.388 1.00 49.76 C
ATOM 7 C4' U B1087 46.715 103.931 116.226 1.00 52.09 C
ATOM 8 O4' U B1087 46.424 104.122 114.810 1.00 52.56 O
ATOM 9 C3' U B1087 45.394 103.532 116.877 1.00 52.56 C
ATOM 10 O3' U B1087 44.785 104.696 117.416 1.00 53.35 O
ATOM 11 C2' U B1087 44.584 103.004 115.696 1.00 51.93 C
ATOM 12 O2' U B1087 43.186 103.091 115.882 1.00 51.94 O
ATOM 13 C1' U B1087 45.042 103.945 114.588 1.00 50.16 C
ATOM 14 N1 U B1087 44.838 103.461 113.215 1.00 48.27 N
ATOM 15 C2 U B1087 44.116 104.274 112.351 1.00 46.42 C
ATOM 16 O2 U B1087 43.651 105.349 112.678 1.00 44.95 O
ATOM 17 N3 U B1087 43.955 103.779 111.087 1.00 46.13 N
ATOM 18 C4 U B1087 44.410 102.581 110.600 1.00 48.94 C
ATOM 19 O4 U B1087 44.163 102.276 109.429 1.00 51.62 O
ATOM 20 C5 U B1087 45.149 101.791 111.545 1.00 49.59 C
ATOM 21 C6 U B1087 45.337 102.250 112.789 1.00 49.45 C
ATOM 22 P C B1088 44.839 104.947 119.000 1.00 55.81 P
ATOM 23 OP1 C B1088 44.225 106.281 119.288 1.00 55.68 O
ATOM 24 OP2 C B1088 46.234 104.671 119.445 1.00 55.42 O
ATOM 25 O5' C B1088 43.903 103.800 119.591 1.00 54.85 O
TER
ATOM 2 P C A1088 44.839 104.947 119.000 1.00 55.81 P
ATOM 3 OP1 C A1088 44.225 106.281 119.288 1.00 55.68 O
ATOM 4 OP2 C A1088 46.234 104.671 119.445 1.00 55.42 O
ATOM 5 O5' C A1088 43.903 103.800 119.591 1.00 54.85 O
ATOM 6 C5' C A1088 42.621 104.108 120.170 1.00 55.42 C
ATOM 7 C4' C A1088 42.044 102.882 120.839 1.00 56.17 C
ATOM 8 O4' C A1088 41.830 101.851 119.839 1.00 54.71 O
ATOM 9 C3' C A1088 42.941 102.222 121.876 1.00 56.97 C
ATOM 10 O3' C A1088 42.821 102.845 123.156 1.00 55.33 O
ATOM 11 C2' C A1088 42.415 100.792 121.894 1.00 57.02 C
ATOM 12 O2' C A1088 41.255 100.651 122.693 1.00 58.44 O
ATOM 13 C1' C A1088 42.063 100.576 120.416 1.00 55.53 C
ATOM 14 N1 C A1088 43.106 99.880 119.633 1.00 55.43 N
ATOM 15 C2 C A1088 43.382 98.535 119.921 1.00 54.93 C
ATOM 16 O2 C A1088 42.745 97.970 120.817 1.00 59.28 O
ATOM 17 N3 C A1088 44.334 97.887 119.216 1.00 53.32 N
ATOM 18 C4 C A1088 45.002 98.523 118.256 1.00 52.34 C
ATOM 19 N4 C A1088 45.935 97.841 117.594 1.00 49.39 N
ATOM 20 C5 C A1088 44.743 99.888 117.934 1.00 53.39 C
ATOM 21 C6 C A1088 43.797 100.523 118.642 1.00 54.89 C
ATOM 22 P U A1089 44.038 103.724 123.741 1.00 57.81 P
ATOM 23 OP1 U A1089 43.636 104.193 125.093 1.00 57.73 O
ATOM 24 OP2 U A1089 44.398 104.723 122.692 1.00 56.50 O
ATOM 25 O5' U A1089 45.250 102.698 123.900 1.00 55.30 O
TER
ATOM 1 O3' C B1086 49.629 100.793 115.066 1.00 50.91 O
ATOM 2 P U B1087 48.446 100.410 116.089 1.00 50.85 P
ATOM 3 OP1 U B1087 49.050 100.384 117.443 1.00 51.43 O
ATOM 4 OP2 U B1087 47.729 99.210 115.587 1.00 47.73 O
ATOM 5 O5' U B1087 47.441 101.640 116.012 1.00 50.82 O
ATOM 6 C5' U B1087 47.857 102.957 116.388 1.00 49.76 C
ATOM 7 C4' U B1087 46.715 103.931 116.226 1.00 52.09 C
ATOM 8 O4' U B1087 46.424 104.122 114.810 1.00 52.56 O
ATOM 9 C3' U B1087 45.394 103.532 116.877 1.00 52.56 C
ATOM 10 O3' U B1087 44.785 104.696 117.416 1.00 53.35 O
ATOM 11 C2' U B1087 44.584 103.004 115.696 1.00 51.93 C
ATOM 12 O2' U B1087 43.186 103.091 115.882 1.00 51.94 O
ATOM 13 C1' U B1087 45.042 103.945 114.588 1.00 50.16 C
ATOM 14 N1 U B1087 44.838 103.461 113.215 1.00 48.27 N
ATOM 15 C2 U B1087 44.116 104.274 112.351 1.00 46.42 C
ATOM 16 O2 U B1087 43.651 105.349 112.678 1.00 44.95 O
ATOM 17 N3 U B1087 43.955 103.779 111.087 1.00 46.13 N
ATOM 18 C4 U B1087 44.410 102.581 110.600 1.00 48.94 C
ATOM 19 O4 U B1087 44.163 102.276 109.429 1.00 51.62 O
ATOM 20 C5 U B1087 45.149 101.791 111.545 1.00 49.59 C
ATOM 21 C6 U B1087 45.337 102.250 112.789 1.00 49.45 C
ATOM 22 P C B1088 44.839 104.947 119.000 1.00 55.81 P
ATOM 23 OP1 C B1088 44.225 106.281 119.288 1.00 55.68 O
ATOM 24 OP2 C B1088 46.234 104.671 119.445 1.00 55.42 O
ATOM 25 O5' C B1088 43.903 103.800 119.591 1.00 54.85 O
TER
Atoms:
C2: (43.382,98.535,119.921)
OP1: (44.225,106.281,119.288)
OP2: (46.234,104.671,119.445)
C4: (45.002,98.523,118.256)
O5': (43.903,103.800,119.591)
C3': (42.941,102.222,121.876)
C1': (42.063,100.576,120.416)
O4': (41.830,101.851,119.839)
C5': (42.621,104.108,120.170)
P: (44.839,104.947,119.000)
O2: (42.745,97.970,120.817)
C4': (42.044,102.882,120.839)
C2': (42.415,100.792,121.894)
O2': (41.255,100.651,122.693)
N1: (43.106,99.880,119.633)
N3: (44.334,97.887,119.216)
N4: (45.935,97.841,117.594)
C6: (43.797,100.523,118.642)
C5: (44.743,99.888,117.934)
O3': (42.821,102.845,123.156)
OP1: (44.225,106.281,119.288)
OP2: (46.234,104.671,119.445)
C4: (45.002,98.523,118.256)
O5': (43.903,103.800,119.591)
C3': (42.941,102.222,121.876)
C1': (42.063,100.576,120.416)
O4': (41.830,101.851,119.839)
C5': (42.621,104.108,120.170)
P: (44.839,104.947,119.000)
O2: (42.745,97.970,120.817)
C4': (42.044,102.882,120.839)
C2': (42.415,100.792,121.894)
O2': (41.255,100.651,122.693)
N1: (43.106,99.880,119.633)
N3: (44.334,97.887,119.216)
N4: (45.935,97.841,117.594)
C6: (43.797,100.523,118.642)
C5: (44.743,99.888,117.934)
O3': (42.821,102.845,123.156)
C4: (44.410,102.581,110.600)
N3: (43.955,103.779,111.087)
OP1: (49.050,100.384,117.443)
OP2: (47.729,99.210,115.587)
C2: (44.116,104.274,112.351)
C1': (45.042,103.945,114.588)
C3': (45.394,103.532,116.877)
O5': (47.441,101.640,116.012)
O4': (46.424,104.122,114.810)
C5': (47.857,102.957,116.388)
P: (48.446,100.410,116.089)
C4': (46.715,103.931,116.226)
C2': (44.584,103.004,115.696)
O2': (43.186,103.091,115.882)
N1: (44.838,103.461,113.215)
O4: (44.163,102.276,109.429)
O2: (43.651,105.349,112.678)
C6: (45.337,102.250,112.789)
C5: (45.149,101.791,111.545)
O3': (44.785,104.696,117.416)
N3: (43.955,103.779,111.087)
OP1: (49.050,100.384,117.443)
OP2: (47.729,99.210,115.587)
C2: (44.116,104.274,112.351)
C1': (45.042,103.945,114.588)
C3': (45.394,103.532,116.877)
O5': (47.441,101.640,116.012)
O4': (46.424,104.122,114.810)
C5': (47.857,102.957,116.388)
P: (48.446,100.410,116.089)
C4': (46.715,103.931,116.226)
C2': (44.584,103.004,115.696)
O2': (43.186,103.091,115.882)
N1: (44.838,103.461,113.215)
O4: (44.163,102.276,109.429)
O2: (43.651,105.349,112.678)
C6: (45.337,102.250,112.789)
C5: (45.149,101.791,111.545)
O3': (44.785,104.696,117.416)
Image (generated by PyMOL):