Doublet info:
Details
Nucleotide types:
CU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJ9:01085:01084
Extra
PDB:
ATOM 1 O3' U A1084 42.732 94.478 115.061 1.00 47.91 O
ATOM 2 P C A1085 44.087 95.106 115.651 1.00 51.36 P
ATOM 3 OP1 C A1085 45.160 94.146 115.273 1.00 49.19 O
ATOM 4 OP2 C A1085 43.898 95.464 117.087 1.00 49.83 O
ATOM 5 O5' C A1085 44.273 96.456 114.823 1.00 49.16 O
ATOM 6 C5' C A1085 44.313 96.435 113.383 1.00 50.15 C
ATOM 7 C4' C A1085 44.377 97.840 112.834 1.00 50.17 C
ATOM 8 O4' C A1085 43.222 98.579 113.306 1.00 51.14 O
ATOM 9 C3' C A1085 45.591 98.674 113.222 1.00 49.67 C
ATOM 10 O3' C A1085 45.859 99.581 112.154 1.00 48.41 O
ATOM 11 C2' C A1085 45.095 99.409 114.465 1.00 49.85 C
ATOM 12 O2' C A1085 45.764 100.625 114.707 1.00 51.29 O
ATOM 13 C1' C A1085 43.640 99.675 114.096 1.00 49.41 C
ATOM 14 N1 C A1085 42.723 99.761 115.240 1.00 47.98 N
ATOM 15 C2 C A1085 42.063 100.970 115.499 1.00 48.73 C
ATOM 16 O2 C A1085 42.334 101.973 114.817 1.00 48.97 O
ATOM 17 N3 C A1085 41.153 101.016 116.490 1.00 49.44 N
ATOM 18 C4 C A1085 40.909 99.929 117.225 1.00 49.65 C
ATOM 19 N4 C A1085 39.981 100.014 118.176 1.00 51.14 N
ATOM 20 C5 C A1085 41.599 98.706 117.015 1.00 49.71 C
ATOM 21 C6 C A1085 42.489 98.666 116.023 1.00 48.90 C
ATOM 22 P C A1086 47.238 99.472 111.330 1.00 48.51 P
ATOM 23 OP1 C A1086 47.005 100.072 109.991 1.00 49.45 O
ATOM 24 OP2 C A1086 47.771 98.086 111.426 1.00 47.63 O
ATOM 25 O5' C A1086 48.195 100.463 112.122 1.00 48.84 O
TER
ATOM 1 O3' A B1083 38.520 95.164 119.478 1.00 44.27 O
ATOM 2 P U B1084 39.940 95.856 119.276 1.00 41.91 P
ATOM 3 OP1 U B1084 40.901 95.126 120.128 1.00 43.99 O
ATOM 4 OP2 U B1084 39.759 97.301 119.453 1.00 42.56 O
ATOM 5 O5' U B1084 40.266 95.591 117.743 1.00 42.35 O
ATOM 6 C5' U B1084 40.388 94.249 117.239 1.00 43.22 C
ATOM 7 C4' U B1084 40.453 94.265 115.735 1.00 44.54 C
ATOM 8 O4' U B1084 39.196 94.735 115.199 1.00 44.78 O
ATOM 9 C3' U B1084 41.506 95.195 115.160 1.00 45.06 C
ATOM 10 O3' U B1084 42.732 94.478 115.061 1.00 47.91 O
ATOM 11 C2' U B1084 40.946 95.533 113.785 1.00 45.44 C
ATOM 12 O2' U B1084 41.240 94.545 112.819 1.00 47.99 O
ATOM 13 C1' U B1084 39.438 95.522 114.050 1.00 44.20 C
ATOM 14 N1 U B1084 38.811 96.833 114.252 1.00 42.54 N
ATOM 15 C2 U B1084 38.433 97.543 113.133 1.00 43.32 C
ATOM 16 O2 U B1084 38.647 97.151 111.996 1.00 43.44 O
ATOM 17 N3 U B1084 37.799 98.733 113.391 1.00 43.45 N
ATOM 18 C4 U B1084 37.525 99.274 114.627 1.00 43.46 C
ATOM 19 O4 U B1084 36.926 100.349 114.704 1.00 45.28 O
ATOM 20 C5 U B1084 37.973 98.489 115.730 1.00 43.08 C
ATOM 21 C6 U B1084 38.586 97.329 115.511 1.00 42.83 C
ATOM 22 P C B1085 44.087 95.106 115.651 1.00 51.36 P
ATOM 23 OP1 C B1085 45.160 94.146 115.273 1.00 49.19 O
ATOM 24 OP2 C B1085 43.898 95.464 117.087 1.00 49.83 O
ATOM 25 O5' C B1085 44.273 96.456 114.823 1.00 49.16 O
TER
ATOM 2 P C A1085 44.087 95.106 115.651 1.00 51.36 P
ATOM 3 OP1 C A1085 45.160 94.146 115.273 1.00 49.19 O
ATOM 4 OP2 C A1085 43.898 95.464 117.087 1.00 49.83 O
ATOM 5 O5' C A1085 44.273 96.456 114.823 1.00 49.16 O
ATOM 6 C5' C A1085 44.313 96.435 113.383 1.00 50.15 C
ATOM 7 C4' C A1085 44.377 97.840 112.834 1.00 50.17 C
ATOM 8 O4' C A1085 43.222 98.579 113.306 1.00 51.14 O
ATOM 9 C3' C A1085 45.591 98.674 113.222 1.00 49.67 C
ATOM 10 O3' C A1085 45.859 99.581 112.154 1.00 48.41 O
ATOM 11 C2' C A1085 45.095 99.409 114.465 1.00 49.85 C
ATOM 12 O2' C A1085 45.764 100.625 114.707 1.00 51.29 O
ATOM 13 C1' C A1085 43.640 99.675 114.096 1.00 49.41 C
ATOM 14 N1 C A1085 42.723 99.761 115.240 1.00 47.98 N
ATOM 15 C2 C A1085 42.063 100.970 115.499 1.00 48.73 C
ATOM 16 O2 C A1085 42.334 101.973 114.817 1.00 48.97 O
ATOM 17 N3 C A1085 41.153 101.016 116.490 1.00 49.44 N
ATOM 18 C4 C A1085 40.909 99.929 117.225 1.00 49.65 C
ATOM 19 N4 C A1085 39.981 100.014 118.176 1.00 51.14 N
ATOM 20 C5 C A1085 41.599 98.706 117.015 1.00 49.71 C
ATOM 21 C6 C A1085 42.489 98.666 116.023 1.00 48.90 C
ATOM 22 P C A1086 47.238 99.472 111.330 1.00 48.51 P
ATOM 23 OP1 C A1086 47.005 100.072 109.991 1.00 49.45 O
ATOM 24 OP2 C A1086 47.771 98.086 111.426 1.00 47.63 O
ATOM 25 O5' C A1086 48.195 100.463 112.122 1.00 48.84 O
TER
ATOM 1 O3' A B1083 38.520 95.164 119.478 1.00 44.27 O
ATOM 2 P U B1084 39.940 95.856 119.276 1.00 41.91 P
ATOM 3 OP1 U B1084 40.901 95.126 120.128 1.00 43.99 O
ATOM 4 OP2 U B1084 39.759 97.301 119.453 1.00 42.56 O
ATOM 5 O5' U B1084 40.266 95.591 117.743 1.00 42.35 O
ATOM 6 C5' U B1084 40.388 94.249 117.239 1.00 43.22 C
ATOM 7 C4' U B1084 40.453 94.265 115.735 1.00 44.54 C
ATOM 8 O4' U B1084 39.196 94.735 115.199 1.00 44.78 O
ATOM 9 C3' U B1084 41.506 95.195 115.160 1.00 45.06 C
ATOM 10 O3' U B1084 42.732 94.478 115.061 1.00 47.91 O
ATOM 11 C2' U B1084 40.946 95.533 113.785 1.00 45.44 C
ATOM 12 O2' U B1084 41.240 94.545 112.819 1.00 47.99 O
ATOM 13 C1' U B1084 39.438 95.522 114.050 1.00 44.20 C
ATOM 14 N1 U B1084 38.811 96.833 114.252 1.00 42.54 N
ATOM 15 C2 U B1084 38.433 97.543 113.133 1.00 43.32 C
ATOM 16 O2 U B1084 38.647 97.151 111.996 1.00 43.44 O
ATOM 17 N3 U B1084 37.799 98.733 113.391 1.00 43.45 N
ATOM 18 C4 U B1084 37.525 99.274 114.627 1.00 43.46 C
ATOM 19 O4 U B1084 36.926 100.349 114.704 1.00 45.28 O
ATOM 20 C5 U B1084 37.973 98.489 115.730 1.00 43.08 C
ATOM 21 C6 U B1084 38.586 97.329 115.511 1.00 42.83 C
ATOM 22 P C B1085 44.087 95.106 115.651 1.00 51.36 P
ATOM 23 OP1 C B1085 45.160 94.146 115.273 1.00 49.19 O
ATOM 24 OP2 C B1085 43.898 95.464 117.087 1.00 49.83 O
ATOM 25 O5' C B1085 44.273 96.456 114.823 1.00 49.16 O
TER
Atoms:
C2: (42.063,100.970,115.499)
OP1: (45.160,94.146,115.273)
OP2: (43.898,95.464,117.087)
C4: (40.909,99.929,117.225)
O5': (44.273,96.456,114.823)
C3': (45.591,98.674,113.222)
C1': (43.640,99.675,114.096)
O4': (43.222,98.579,113.306)
C5': (44.313,96.435,113.383)
P: (44.087,95.106,115.651)
O2: (42.334,101.973,114.817)
C4': (44.377,97.840,112.834)
C2': (45.095,99.409,114.465)
O2': (45.764,100.625,114.707)
N1: (42.723,99.761,115.240)
N3: (41.153,101.016,116.490)
N4: (39.981,100.014,118.176)
C6: (42.489,98.666,116.023)
C5: (41.599,98.706,117.015)
O3': (45.859,99.581,112.154)
OP1: (45.160,94.146,115.273)
OP2: (43.898,95.464,117.087)
C4: (40.909,99.929,117.225)
O5': (44.273,96.456,114.823)
C3': (45.591,98.674,113.222)
C1': (43.640,99.675,114.096)
O4': (43.222,98.579,113.306)
C5': (44.313,96.435,113.383)
P: (44.087,95.106,115.651)
O2: (42.334,101.973,114.817)
C4': (44.377,97.840,112.834)
C2': (45.095,99.409,114.465)
O2': (45.764,100.625,114.707)
N1: (42.723,99.761,115.240)
N3: (41.153,101.016,116.490)
N4: (39.981,100.014,118.176)
C6: (42.489,98.666,116.023)
C5: (41.599,98.706,117.015)
O3': (45.859,99.581,112.154)
C4: (37.525,99.274,114.627)
N3: (37.799,98.733,113.391)
OP1: (40.901,95.126,120.128)
OP2: (39.759,97.301,119.453)
C2: (38.433,97.543,113.133)
C1': (39.438,95.522,114.050)
C3': (41.506,95.195,115.160)
O5': (40.266,95.591,117.743)
O4': (39.196,94.735,115.199)
C5': (40.388,94.249,117.239)
P: (39.940,95.856,119.276)
C4': (40.453,94.265,115.735)
C2': (40.946,95.533,113.785)
O2': (41.240,94.545,112.819)
N1: (38.811,96.833,114.252)
O4: (36.926,100.349,114.704)
O2: (38.647,97.151,111.996)
C6: (38.586,97.329,115.511)
C5: (37.973,98.489,115.730)
O3': (42.732,94.478,115.061)
N3: (37.799,98.733,113.391)
OP1: (40.901,95.126,120.128)
OP2: (39.759,97.301,119.453)
C2: (38.433,97.543,113.133)
C1': (39.438,95.522,114.050)
C3': (41.506,95.195,115.160)
O5': (40.266,95.591,117.743)
O4': (39.196,94.735,115.199)
C5': (40.388,94.249,117.239)
P: (39.940,95.856,119.276)
C4': (40.453,94.265,115.735)
C2': (40.946,95.533,113.785)
O2': (41.240,94.545,112.819)
N1: (38.811,96.833,114.252)
O4: (36.926,100.349,114.704)
O2: (38.647,97.151,111.996)
C6: (38.586,97.329,115.511)
C5: (37.973,98.489,115.730)
O3': (42.732,94.478,115.061)
Image (generated by PyMOL):