Doublet info:
Details
Nucleotide types:
CU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5B:2129:2128
Extra
PDB:
ATOM 1 O3' U A 128 -41.364 110.199 76.313 1.00118.99 O
ATOM 2 P C A 129 -39.940 110.824 76.697 1.00126.23 P
ATOM 3 OP1 C A 129 -38.901 109.916 76.174 1.00125.18 O
ATOM 4 OP2 C A 129 -39.962 111.125 78.145 1.00126.38 O
ATOM 5 O5' C A 129 -39.941 112.164 75.873 1.00127.52 O
ATOM 6 C5' C A 129 -39.359 112.227 74.586 1.00127.55 C
ATOM 7 C4' C A 129 -38.697 113.555 74.396 1.00128.60 C
ATOM 8 O4' C A 129 -39.671 114.510 73.861 1.00129.84 O
ATOM 9 C3' C A 129 -38.247 114.216 75.684 1.00128.94 C
ATOM 10 O3' C A 129 -37.061 113.651 76.273 1.00128.04 O
ATOM 11 C2' C A 129 -38.235 115.691 75.296 1.00130.36 C
ATOM 12 O2' C A 129 -37.223 115.965 74.341 1.00130.46 O
ATOM 13 C1' C A 129 -39.567 115.740 74.561 1.00130.88 C
ATOM 14 N1 C A 129 -40.696 115.816 75.514 1.00131.17 N
ATOM 15 C2 C A 129 -40.909 116.996 76.213 1.00132.29 C
ATOM 16 O2 C A 129 -40.161 117.959 75.987 1.00133.02 O
ATOM 17 N3 C A 129 -41.929 117.038 77.109 1.00132.57 N
ATOM 18 C4 C A 129 -42.705 115.963 77.318 1.00131.77 C
ATOM 19 N4 C A 129 -43.699 116.037 78.203 1.00132.10 N
ATOM 20 C5 C A 129 -42.506 114.743 76.625 1.00130.62 C
ATOM 21 C6 C A 129 -41.506 114.730 75.747 1.00130.38 C
ATOM 22 P C A 130 -35.581 114.202 75.969 1.00170.24 P
ATOM 23 OP1 C A 130 -35.493 114.472 74.513 1.00170.63 O
ATOM 24 OP2 C A 130 -34.630 113.235 76.572 1.00169.08 O
ATOM 25 O5' C A 130 -35.552 115.560 76.791 1.00171.43 O
TER
ATOM 1 O3' U B 127 -46.912 112.454 79.119 1.00 99.59 O
ATOM 2 P U B 128 -45.821 113.386 78.395 1.00123.19 P
ATOM 3 OP1 U B 128 -45.012 114.016 79.465 1.00123.41 O
ATOM 4 OP2 U B 128 -46.541 114.261 77.439 1.00124.36 O
ATOM 5 O5' U B 128 -44.938 112.333 77.600 1.00121.97 O
ATOM 6 C5' U B 128 -44.230 111.327 78.297 1.00120.76 C
ATOM 7 C4' U B 128 -43.530 110.376 77.362 1.00119.75 C
ATOM 8 O4' U B 128 -44.512 109.661 76.557 1.00119.53 O
ATOM 9 C3' U B 128 -42.540 111.011 76.379 1.00120.08 C
ATOM 10 O3' U B 128 -41.364 110.199 76.313 1.00118.99 O
ATOM 11 C2' U B 128 -43.288 110.947 75.040 1.00120.42 C
ATOM 12 O2' U B 128 -42.452 110.894 73.903 1.00120.24 O
ATOM 13 C1' U B 128 -44.090 109.661 75.210 1.00119.53 C
ATOM 14 N1 U B 128 -45.283 109.545 74.334 1.00119.96 N
ATOM 15 C2 U B 128 -45.134 108.771 73.203 1.00119.38 C
ATOM 16 O2 U B 128 -44.073 108.250 72.932 1.00118.60 O
ATOM 17 N3 U B 128 -46.254 108.657 72.408 1.00119.82 N
ATOM 18 C4 U B 128 -47.492 109.225 72.635 1.00120.76 C
ATOM 19 O4 U B 128 -48.412 109.047 71.838 1.00121.10 O
ATOM 20 C5 U B 128 -47.571 110.001 73.835 1.00121.29 C
ATOM 21 C6 U B 128 -46.495 110.130 74.627 1.00120.89 C
ATOM 22 P C B 129 -39.940 110.824 76.697 1.00126.23 P
ATOM 23 OP1 C B 129 -38.901 109.916 76.174 1.00125.18 O
ATOM 24 OP2 C B 129 -39.962 111.125 78.145 1.00126.38 O
ATOM 25 O5' C B 129 -39.941 112.164 75.873 1.00127.52 O
TER
ATOM 2 P C A 129 -39.940 110.824 76.697 1.00126.23 P
ATOM 3 OP1 C A 129 -38.901 109.916 76.174 1.00125.18 O
ATOM 4 OP2 C A 129 -39.962 111.125 78.145 1.00126.38 O
ATOM 5 O5' C A 129 -39.941 112.164 75.873 1.00127.52 O
ATOM 6 C5' C A 129 -39.359 112.227 74.586 1.00127.55 C
ATOM 7 C4' C A 129 -38.697 113.555 74.396 1.00128.60 C
ATOM 8 O4' C A 129 -39.671 114.510 73.861 1.00129.84 O
ATOM 9 C3' C A 129 -38.247 114.216 75.684 1.00128.94 C
ATOM 10 O3' C A 129 -37.061 113.651 76.273 1.00128.04 O
ATOM 11 C2' C A 129 -38.235 115.691 75.296 1.00130.36 C
ATOM 12 O2' C A 129 -37.223 115.965 74.341 1.00130.46 O
ATOM 13 C1' C A 129 -39.567 115.740 74.561 1.00130.88 C
ATOM 14 N1 C A 129 -40.696 115.816 75.514 1.00131.17 N
ATOM 15 C2 C A 129 -40.909 116.996 76.213 1.00132.29 C
ATOM 16 O2 C A 129 -40.161 117.959 75.987 1.00133.02 O
ATOM 17 N3 C A 129 -41.929 117.038 77.109 1.00132.57 N
ATOM 18 C4 C A 129 -42.705 115.963 77.318 1.00131.77 C
ATOM 19 N4 C A 129 -43.699 116.037 78.203 1.00132.10 N
ATOM 20 C5 C A 129 -42.506 114.743 76.625 1.00130.62 C
ATOM 21 C6 C A 129 -41.506 114.730 75.747 1.00130.38 C
ATOM 22 P C A 130 -35.581 114.202 75.969 1.00170.24 P
ATOM 23 OP1 C A 130 -35.493 114.472 74.513 1.00170.63 O
ATOM 24 OP2 C A 130 -34.630 113.235 76.572 1.00169.08 O
ATOM 25 O5' C A 130 -35.552 115.560 76.791 1.00171.43 O
TER
ATOM 1 O3' U B 127 -46.912 112.454 79.119 1.00 99.59 O
ATOM 2 P U B 128 -45.821 113.386 78.395 1.00123.19 P
ATOM 3 OP1 U B 128 -45.012 114.016 79.465 1.00123.41 O
ATOM 4 OP2 U B 128 -46.541 114.261 77.439 1.00124.36 O
ATOM 5 O5' U B 128 -44.938 112.333 77.600 1.00121.97 O
ATOM 6 C5' U B 128 -44.230 111.327 78.297 1.00120.76 C
ATOM 7 C4' U B 128 -43.530 110.376 77.362 1.00119.75 C
ATOM 8 O4' U B 128 -44.512 109.661 76.557 1.00119.53 O
ATOM 9 C3' U B 128 -42.540 111.011 76.379 1.00120.08 C
ATOM 10 O3' U B 128 -41.364 110.199 76.313 1.00118.99 O
ATOM 11 C2' U B 128 -43.288 110.947 75.040 1.00120.42 C
ATOM 12 O2' U B 128 -42.452 110.894 73.903 1.00120.24 O
ATOM 13 C1' U B 128 -44.090 109.661 75.210 1.00119.53 C
ATOM 14 N1 U B 128 -45.283 109.545 74.334 1.00119.96 N
ATOM 15 C2 U B 128 -45.134 108.771 73.203 1.00119.38 C
ATOM 16 O2 U B 128 -44.073 108.250 72.932 1.00118.60 O
ATOM 17 N3 U B 128 -46.254 108.657 72.408 1.00119.82 N
ATOM 18 C4 U B 128 -47.492 109.225 72.635 1.00120.76 C
ATOM 19 O4 U B 128 -48.412 109.047 71.838 1.00121.10 O
ATOM 20 C5 U B 128 -47.571 110.001 73.835 1.00121.29 C
ATOM 21 C6 U B 128 -46.495 110.130 74.627 1.00120.89 C
ATOM 22 P C B 129 -39.940 110.824 76.697 1.00126.23 P
ATOM 23 OP1 C B 129 -38.901 109.916 76.174 1.00125.18 O
ATOM 24 OP2 C B 129 -39.962 111.125 78.145 1.00126.38 O
ATOM 25 O5' C B 129 -39.941 112.164 75.873 1.00127.52 O
TER
Atoms:
C2: (-40.909,116.996,76.213)
OP1: (-38.901,109.916,76.174)
OP2: (-39.962,111.125,78.145)
C4: (-42.705,115.963,77.318)
O5': (-39.941,112.164,75.873)
C3': (-38.247,114.216,75.684)
C1': (-39.567,115.740,74.561)
O4': (-39.671,114.510,73.861)
C5': (-39.359,112.227,74.586)
P: (-39.940,110.824,76.697)
O2: (-40.161,117.959,75.987)
C4': (-38.697,113.555,74.396)
C2': (-38.235,115.691,75.296)
O2': (-37.223,115.965,74.341)
N1: (-40.696,115.816,75.514)
N3: (-41.929,117.038,77.109)
N4: (-43.699,116.037,78.203)
C6: (-41.506,114.730,75.747)
C5: (-42.506,114.743,76.625)
O3': (-37.061,113.651,76.273)
OP1: (-38.901,109.916,76.174)
OP2: (-39.962,111.125,78.145)
C4: (-42.705,115.963,77.318)
O5': (-39.941,112.164,75.873)
C3': (-38.247,114.216,75.684)
C1': (-39.567,115.740,74.561)
O4': (-39.671,114.510,73.861)
C5': (-39.359,112.227,74.586)
P: (-39.940,110.824,76.697)
O2: (-40.161,117.959,75.987)
C4': (-38.697,113.555,74.396)
C2': (-38.235,115.691,75.296)
O2': (-37.223,115.965,74.341)
N1: (-40.696,115.816,75.514)
N3: (-41.929,117.038,77.109)
N4: (-43.699,116.037,78.203)
C6: (-41.506,114.730,75.747)
C5: (-42.506,114.743,76.625)
O3': (-37.061,113.651,76.273)
C4: (-47.492,109.225,72.635)
N3: (-46.254,108.657,72.408)
OP1: (-45.012,114.016,79.465)
OP2: (-46.541,114.261,77.439)
C2: (-45.134,108.771,73.203)
C1': (-44.090,109.661,75.210)
C3': (-42.540,111.011,76.379)
O5': (-44.938,112.333,77.600)
O4': (-44.512,109.661,76.557)
C5': (-44.230,111.327,78.297)
P: (-45.821,113.386,78.395)
C4': (-43.530,110.376,77.362)
C2': (-43.288,110.947,75.040)
O2': (-42.452,110.894,73.903)
N1: (-45.283,109.545,74.334)
O4: (-48.412,109.047,71.838)
O2: (-44.073,108.250,72.932)
C6: (-46.495,110.130,74.627)
C5: (-47.571,110.001,73.835)
O3': (-41.364,110.199,76.313)
N3: (-46.254,108.657,72.408)
OP1: (-45.012,114.016,79.465)
OP2: (-46.541,114.261,77.439)
C2: (-45.134,108.771,73.203)
C1': (-44.090,109.661,75.210)
C3': (-42.540,111.011,76.379)
O5': (-44.938,112.333,77.600)
O4': (-44.512,109.661,76.557)
C5': (-44.230,111.327,78.297)
P: (-45.821,113.386,78.395)
C4': (-43.530,110.376,77.362)
C2': (-43.288,110.947,75.040)
O2': (-42.452,110.894,73.903)
N1: (-45.283,109.545,74.334)
O4: (-48.412,109.047,71.838)
O2: (-44.073,108.250,72.932)
C6: (-46.495,110.130,74.627)
C5: (-47.571,110.001,73.835)
O3': (-41.364,110.199,76.313)
Image (generated by PyMOL):