Doublet info:
Details
Nucleotide types:
CU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3OIJ:D6:D5
Extra
PDB:
ATOM 1 O3' U A 5 37.748 0.518 2.310 1.00 50.15 O
ATOM 2 P C A 6 38.845 0.230 3.424 1.00 59.44 P
ATOM 3 OP1 C A 6 38.280 0.705 4.714 1.00 63.45 O
ATOM 4 OP2 C A 6 40.139 0.782 2.947 1.00 58.14 O
ATOM 5 O5' C A 6 38.874 -1.358 3.299 1.00 46.30 O
ATOM 6 C5' C A 6 39.704 -2.147 4.133 1.00 44.23 C
ATOM 7 C4' C A 6 39.867 -3.543 3.603 1.00 42.61 C
ATOM 8 O4' C A 6 38.608 -4.256 3.585 1.00 46.26 O
ATOM 9 C3' C A 6 40.349 -3.648 2.177 1.00 48.40 C
ATOM 10 O3' C A 6 41.734 -3.364 2.111 1.00 56.44 O
ATOM 11 C2' C A 6 39.935 -5.074 1.811 1.00 52.46 C
ATOM 12 O2' C A 6 40.783 -6.046 2.409 1.00 54.97 O
ATOM 13 C1' C A 6 38.595 -5.190 2.526 1.00 53.57 C
ATOM 14 N1 C A 6 37.396 -4.903 1.724 1.00 63.30 N
ATOM 15 C2 C A 6 36.229 -5.591 2.057 1.00 69.66 C
ATOM 16 O2 C A 6 36.264 -6.414 2.978 1.00 69.67 O
ATOM 17 N3 C A 6 35.093 -5.348 1.372 1.00 75.39 N
ATOM 18 C4 C A 6 35.093 -4.452 0.385 1.00 69.48 C
ATOM 19 N4 C A 6 33.941 -4.243 -0.260 1.00 60.06 N
ATOM 20 C5 C A 6 36.274 -3.735 0.025 1.00 66.57 C
ATOM 21 C6 C A 6 37.395 -3.984 0.714 1.00 62.83 C
ATOM 22 P A A 7 42.630 -3.514 0.793 1.00 67.56 P
ATOM 23 OP1 A A 7 42.460 -2.301 -0.043 1.00 76.57 O
ATOM 24 OP2 A A 7 42.350 -4.849 0.221 1.00 56.46 O
ATOM 25 O5' A A 7 44.068 -3.531 1.456 1.00 50.76 O
TER
ATOM 1 O3' U B 4 35.686 -1.806 -2.572 1.00 54.78 O
ATOM 2 P U B 5 34.450 -0.863 -2.172 1.00 67.89 P
ATOM 3 OP1 U B 5 33.440 -1.721 -1.514 1.00 58.47 O
ATOM 4 OP2 U B 5 34.067 -0.085 -3.378 1.00 80.58 O
ATOM 5 O5' U B 5 35.150 0.072 -1.096 1.00 65.73 O
ATOM 6 C5' U B 5 35.530 -0.404 0.185 1.00 52.19 C
ATOM 7 C4' U B 5 35.699 0.762 1.116 1.00 50.20 C
ATOM 8 O4' U B 5 34.419 1.360 1.419 1.00 47.82 O
ATOM 9 C3' U B 5 36.342 0.482 2.463 1.00 54.76 C
ATOM 10 O3' U B 5 37.748 0.518 2.310 1.00 50.15 O
ATOM 11 C2' U B 5 35.821 1.604 3.356 1.00 48.97 C
ATOM 12 O2' U B 5 36.767 2.657 3.404 1.00 52.06 O
ATOM 13 C1' U B 5 34.556 2.079 2.623 1.00 51.97 C
ATOM 14 N1 U B 5 33.312 2.256 3.406 1.00 58.45 N
ATOM 15 C2 U B 5 32.712 1.180 4.027 1.00 60.82 C
ATOM 16 O2 U B 5 33.158 0.053 3.952 1.00 56.37 O
ATOM 17 N3 U B 5 31.567 1.489 4.734 1.00 61.36 N
ATOM 18 C4 U B 5 30.993 2.740 4.881 1.00 54.24 C
ATOM 19 O4 U B 5 29.978 2.872 5.555 1.00 47.50 O
ATOM 20 C5 U B 5 31.675 3.796 4.208 1.00 54.60 C
ATOM 21 C6 U B 5 32.780 3.526 3.510 1.00 54.78 C
ATOM 22 P C B 6 38.845 0.230 3.424 1.00 59.44 P
ATOM 23 OP1 C B 6 38.280 0.705 4.714 1.00 63.45 O
ATOM 24 OP2 C B 6 40.139 0.782 2.947 1.00 58.14 O
ATOM 25 O5' C B 6 38.874 -1.358 3.299 1.00 46.30 O
TER
ATOM 2 P C A 6 38.845 0.230 3.424 1.00 59.44 P
ATOM 3 OP1 C A 6 38.280 0.705 4.714 1.00 63.45 O
ATOM 4 OP2 C A 6 40.139 0.782 2.947 1.00 58.14 O
ATOM 5 O5' C A 6 38.874 -1.358 3.299 1.00 46.30 O
ATOM 6 C5' C A 6 39.704 -2.147 4.133 1.00 44.23 C
ATOM 7 C4' C A 6 39.867 -3.543 3.603 1.00 42.61 C
ATOM 8 O4' C A 6 38.608 -4.256 3.585 1.00 46.26 O
ATOM 9 C3' C A 6 40.349 -3.648 2.177 1.00 48.40 C
ATOM 10 O3' C A 6 41.734 -3.364 2.111 1.00 56.44 O
ATOM 11 C2' C A 6 39.935 -5.074 1.811 1.00 52.46 C
ATOM 12 O2' C A 6 40.783 -6.046 2.409 1.00 54.97 O
ATOM 13 C1' C A 6 38.595 -5.190 2.526 1.00 53.57 C
ATOM 14 N1 C A 6 37.396 -4.903 1.724 1.00 63.30 N
ATOM 15 C2 C A 6 36.229 -5.591 2.057 1.00 69.66 C
ATOM 16 O2 C A 6 36.264 -6.414 2.978 1.00 69.67 O
ATOM 17 N3 C A 6 35.093 -5.348 1.372 1.00 75.39 N
ATOM 18 C4 C A 6 35.093 -4.452 0.385 1.00 69.48 C
ATOM 19 N4 C A 6 33.941 -4.243 -0.260 1.00 60.06 N
ATOM 20 C5 C A 6 36.274 -3.735 0.025 1.00 66.57 C
ATOM 21 C6 C A 6 37.395 -3.984 0.714 1.00 62.83 C
ATOM 22 P A A 7 42.630 -3.514 0.793 1.00 67.56 P
ATOM 23 OP1 A A 7 42.460 -2.301 -0.043 1.00 76.57 O
ATOM 24 OP2 A A 7 42.350 -4.849 0.221 1.00 56.46 O
ATOM 25 O5' A A 7 44.068 -3.531 1.456 1.00 50.76 O
TER
ATOM 1 O3' U B 4 35.686 -1.806 -2.572 1.00 54.78 O
ATOM 2 P U B 5 34.450 -0.863 -2.172 1.00 67.89 P
ATOM 3 OP1 U B 5 33.440 -1.721 -1.514 1.00 58.47 O
ATOM 4 OP2 U B 5 34.067 -0.085 -3.378 1.00 80.58 O
ATOM 5 O5' U B 5 35.150 0.072 -1.096 1.00 65.73 O
ATOM 6 C5' U B 5 35.530 -0.404 0.185 1.00 52.19 C
ATOM 7 C4' U B 5 35.699 0.762 1.116 1.00 50.20 C
ATOM 8 O4' U B 5 34.419 1.360 1.419 1.00 47.82 O
ATOM 9 C3' U B 5 36.342 0.482 2.463 1.00 54.76 C
ATOM 10 O3' U B 5 37.748 0.518 2.310 1.00 50.15 O
ATOM 11 C2' U B 5 35.821 1.604 3.356 1.00 48.97 C
ATOM 12 O2' U B 5 36.767 2.657 3.404 1.00 52.06 O
ATOM 13 C1' U B 5 34.556 2.079 2.623 1.00 51.97 C
ATOM 14 N1 U B 5 33.312 2.256 3.406 1.00 58.45 N
ATOM 15 C2 U B 5 32.712 1.180 4.027 1.00 60.82 C
ATOM 16 O2 U B 5 33.158 0.053 3.952 1.00 56.37 O
ATOM 17 N3 U B 5 31.567 1.489 4.734 1.00 61.36 N
ATOM 18 C4 U B 5 30.993 2.740 4.881 1.00 54.24 C
ATOM 19 O4 U B 5 29.978 2.872 5.555 1.00 47.50 O
ATOM 20 C5 U B 5 31.675 3.796 4.208 1.00 54.60 C
ATOM 21 C6 U B 5 32.780 3.526 3.510 1.00 54.78 C
ATOM 22 P C B 6 38.845 0.230 3.424 1.00 59.44 P
ATOM 23 OP1 C B 6 38.280 0.705 4.714 1.00 63.45 O
ATOM 24 OP2 C B 6 40.139 0.782 2.947 1.00 58.14 O
ATOM 25 O5' C B 6 38.874 -1.358 3.299 1.00 46.30 O
TER
Atoms:
C2: (36.229,-5.591,2.057)
OP1: (38.280,0.705,4.714)
OP2: (40.139,0.782,2.947)
C4: (35.093,-4.452,0.385)
O5': (38.874,-1.358,3.299)
C3': (40.349,-3.648,2.177)
C1': (38.595,-5.190,2.526)
O4': (38.608,-4.256,3.585)
C5': (39.704,-2.147,4.133)
P: (38.845,0.230,3.424)
O2: (36.264,-6.414,2.978)
C4': (39.867,-3.543,3.603)
C2': (39.935,-5.074,1.811)
O2': (40.783,-6.046,2.409)
N1: (37.396,-4.903,1.724)
N3: (35.093,-5.348,1.372)
N4: (33.941,-4.243,-0.260)
C6: (37.395,-3.984,0.714)
C5: (36.274,-3.735,0.025)
O3': (41.734,-3.364,2.111)
OP1: (38.280,0.705,4.714)
OP2: (40.139,0.782,2.947)
C4: (35.093,-4.452,0.385)
O5': (38.874,-1.358,3.299)
C3': (40.349,-3.648,2.177)
C1': (38.595,-5.190,2.526)
O4': (38.608,-4.256,3.585)
C5': (39.704,-2.147,4.133)
P: (38.845,0.230,3.424)
O2: (36.264,-6.414,2.978)
C4': (39.867,-3.543,3.603)
C2': (39.935,-5.074,1.811)
O2': (40.783,-6.046,2.409)
N1: (37.396,-4.903,1.724)
N3: (35.093,-5.348,1.372)
N4: (33.941,-4.243,-0.260)
C6: (37.395,-3.984,0.714)
C5: (36.274,-3.735,0.025)
O3': (41.734,-3.364,2.111)
C4: (30.993,2.740,4.881)
N3: (31.567,1.489,4.734)
OP1: (33.440,-1.721,-1.514)
OP2: (34.067,-0.085,-3.378)
C2: (32.712,1.180,4.027)
C1': (34.556,2.079,2.623)
C3': (36.342,0.482,2.463)
O5': (35.150,0.072,-1.096)
O4': (34.419,1.360,1.419)
C5': (35.530,-0.404,0.185)
P: (34.450,-0.863,-2.172)
C4': (35.699,0.762,1.116)
C2': (35.821,1.604,3.356)
O2': (36.767,2.657,3.404)
N1: (33.312,2.256,3.406)
O4: (29.978,2.872,5.555)
O2: (33.158,0.053,3.952)
C6: (32.780,3.526,3.510)
C5: (31.675,3.796,4.208)
O3': (37.748,0.518,2.310)
N3: (31.567,1.489,4.734)
OP1: (33.440,-1.721,-1.514)
OP2: (34.067,-0.085,-3.378)
C2: (32.712,1.180,4.027)
C1': (34.556,2.079,2.623)
C3': (36.342,0.482,2.463)
O5': (35.150,0.072,-1.096)
O4': (34.419,1.360,1.419)
C5': (35.530,-0.404,0.185)
P: (34.450,-0.863,-2.172)
C4': (35.699,0.762,1.116)
C2': (35.821,1.604,3.356)
O2': (36.767,2.657,3.404)
N1: (33.312,2.256,3.406)
O4: (29.978,2.872,5.555)
O2: (33.158,0.053,3.952)
C6: (32.780,3.526,3.510)
C5: (31.675,3.796,4.208)
O3': (37.748,0.518,2.310)
Image (generated by PyMOL):