Doublet info:
Details
Nucleotide types:
CU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1VQK:01088:01087
Extra
PDB:
ATOM 1 O3' U A1087 44.823 104.614 117.467 1.00 52.10 O
ATOM 2 P C A1088 44.937 104.891 119.046 1.00 55.49 P
ATOM 3 OP1 C A1088 44.340 106.238 119.321 1.00 54.59 O
ATOM 4 OP2 C A1088 46.349 104.625 119.438 1.00 54.31 O
ATOM 5 O5' C A1088 44.018 103.759 119.699 1.00 53.48 O
ATOM 6 C5' C A1088 42.705 104.065 120.221 1.00 54.24 C
ATOM 7 C4' C A1088 42.114 102.848 120.902 1.00 54.28 C
ATOM 8 O4' C A1088 41.864 101.812 119.916 1.00 54.06 O
ATOM 9 C3' C A1088 43.008 102.184 121.939 1.00 54.76 C
ATOM 10 O3' C A1088 42.881 102.812 123.211 1.00 53.83 O
ATOM 11 C2' C A1088 42.476 100.755 121.963 1.00 55.38 C
ATOM 12 O2' C A1088 41.323 100.613 122.773 1.00 57.01 O
ATOM 13 C1' C A1088 42.105 100.538 120.490 1.00 53.91 C
ATOM 14 N1 C A1088 43.134 99.841 119.686 1.00 54.07 N
ATOM 15 C2 C A1088 43.418 98.491 119.964 1.00 54.08 C
ATOM 16 O2 C A1088 42.799 97.918 120.873 1.00 58.06 O
ATOM 17 N3 C A1088 44.358 97.846 119.235 1.00 52.35 N
ATOM 18 C4 C A1088 45.002 98.487 118.261 1.00 52.14 C
ATOM 19 N4 C A1088 45.922 97.809 117.574 1.00 49.18 N
ATOM 20 C5 C A1088 44.733 99.856 117.949 1.00 52.73 C
ATOM 21 C6 C A1088 43.803 100.489 118.681 1.00 53.45 C
ATOM 22 P U A1089 44.105 103.670 123.814 1.00 56.17 P
ATOM 23 OP1 U A1089 43.696 104.096 125.179 1.00 57.11 O
ATOM 24 OP2 U A1089 44.476 104.701 122.801 1.00 56.67 O
ATOM 25 O5' U A1089 45.314 102.635 123.949 1.00 55.89 O
TER
ATOM 1 O3' C B1086 49.676 100.705 115.145 1.00 51.74 O
ATOM 2 P U B1087 48.441 100.335 116.107 1.00 52.02 P
ATOM 3 OP1 U B1087 48.963 100.285 117.492 1.00 53.60 O
ATOM 4 OP2 U B1087 47.755 99.147 115.546 1.00 48.94 O
ATOM 5 O5' U B1087 47.460 101.582 115.992 1.00 50.64 O
ATOM 6 C5' U B1087 47.897 102.896 116.361 1.00 50.85 C
ATOM 7 C4' U B1087 46.757 103.879 116.244 1.00 51.85 C
ATOM 8 O4' U B1087 46.442 104.099 114.840 1.00 51.88 O
ATOM 9 C3' U B1087 45.447 103.468 116.913 1.00 51.80 C
ATOM 10 O3' U B1087 44.823 104.614 117.467 1.00 52.10 O
ATOM 11 C2' U B1087 44.623 102.954 115.739 1.00 51.44 C
ATOM 12 O2' U B1087 43.232 103.038 115.960 1.00 53.28 O
ATOM 13 C1' U B1087 45.057 103.917 114.637 1.00 49.85 C
ATOM 14 N1 U B1087 44.833 103.455 113.258 1.00 48.81 N
ATOM 15 C2 U B1087 44.133 104.302 112.401 1.00 47.60 C
ATOM 16 O2 U B1087 43.711 105.395 112.738 1.00 48.81 O
ATOM 17 N3 U B1087 43.948 103.822 111.134 1.00 46.54 N
ATOM 18 C4 U B1087 44.372 102.615 110.633 1.00 48.44 C
ATOM 19 O4 U B1087 44.119 102.331 109.459 1.00 49.24 O
ATOM 20 C5 U B1087 45.088 101.790 111.570 1.00 48.66 C
ATOM 21 C6 U B1087 45.289 102.228 112.818 1.00 48.78 C
ATOM 22 P C B1088 44.937 104.891 119.046 1.00 55.49 P
ATOM 23 OP1 C B1088 44.340 106.238 119.321 1.00 54.59 O
ATOM 24 OP2 C B1088 46.349 104.625 119.438 1.00 54.31 O
ATOM 25 O5' C B1088 44.018 103.759 119.699 1.00 53.48 O
TER
ATOM 2 P C A1088 44.937 104.891 119.046 1.00 55.49 P
ATOM 3 OP1 C A1088 44.340 106.238 119.321 1.00 54.59 O
ATOM 4 OP2 C A1088 46.349 104.625 119.438 1.00 54.31 O
ATOM 5 O5' C A1088 44.018 103.759 119.699 1.00 53.48 O
ATOM 6 C5' C A1088 42.705 104.065 120.221 1.00 54.24 C
ATOM 7 C4' C A1088 42.114 102.848 120.902 1.00 54.28 C
ATOM 8 O4' C A1088 41.864 101.812 119.916 1.00 54.06 O
ATOM 9 C3' C A1088 43.008 102.184 121.939 1.00 54.76 C
ATOM 10 O3' C A1088 42.881 102.812 123.211 1.00 53.83 O
ATOM 11 C2' C A1088 42.476 100.755 121.963 1.00 55.38 C
ATOM 12 O2' C A1088 41.323 100.613 122.773 1.00 57.01 O
ATOM 13 C1' C A1088 42.105 100.538 120.490 1.00 53.91 C
ATOM 14 N1 C A1088 43.134 99.841 119.686 1.00 54.07 N
ATOM 15 C2 C A1088 43.418 98.491 119.964 1.00 54.08 C
ATOM 16 O2 C A1088 42.799 97.918 120.873 1.00 58.06 O
ATOM 17 N3 C A1088 44.358 97.846 119.235 1.00 52.35 N
ATOM 18 C4 C A1088 45.002 98.487 118.261 1.00 52.14 C
ATOM 19 N4 C A1088 45.922 97.809 117.574 1.00 49.18 N
ATOM 20 C5 C A1088 44.733 99.856 117.949 1.00 52.73 C
ATOM 21 C6 C A1088 43.803 100.489 118.681 1.00 53.45 C
ATOM 22 P U A1089 44.105 103.670 123.814 1.00 56.17 P
ATOM 23 OP1 U A1089 43.696 104.096 125.179 1.00 57.11 O
ATOM 24 OP2 U A1089 44.476 104.701 122.801 1.00 56.67 O
ATOM 25 O5' U A1089 45.314 102.635 123.949 1.00 55.89 O
TER
ATOM 1 O3' C B1086 49.676 100.705 115.145 1.00 51.74 O
ATOM 2 P U B1087 48.441 100.335 116.107 1.00 52.02 P
ATOM 3 OP1 U B1087 48.963 100.285 117.492 1.00 53.60 O
ATOM 4 OP2 U B1087 47.755 99.147 115.546 1.00 48.94 O
ATOM 5 O5' U B1087 47.460 101.582 115.992 1.00 50.64 O
ATOM 6 C5' U B1087 47.897 102.896 116.361 1.00 50.85 C
ATOM 7 C4' U B1087 46.757 103.879 116.244 1.00 51.85 C
ATOM 8 O4' U B1087 46.442 104.099 114.840 1.00 51.88 O
ATOM 9 C3' U B1087 45.447 103.468 116.913 1.00 51.80 C
ATOM 10 O3' U B1087 44.823 104.614 117.467 1.00 52.10 O
ATOM 11 C2' U B1087 44.623 102.954 115.739 1.00 51.44 C
ATOM 12 O2' U B1087 43.232 103.038 115.960 1.00 53.28 O
ATOM 13 C1' U B1087 45.057 103.917 114.637 1.00 49.85 C
ATOM 14 N1 U B1087 44.833 103.455 113.258 1.00 48.81 N
ATOM 15 C2 U B1087 44.133 104.302 112.401 1.00 47.60 C
ATOM 16 O2 U B1087 43.711 105.395 112.738 1.00 48.81 O
ATOM 17 N3 U B1087 43.948 103.822 111.134 1.00 46.54 N
ATOM 18 C4 U B1087 44.372 102.615 110.633 1.00 48.44 C
ATOM 19 O4 U B1087 44.119 102.331 109.459 1.00 49.24 O
ATOM 20 C5 U B1087 45.088 101.790 111.570 1.00 48.66 C
ATOM 21 C6 U B1087 45.289 102.228 112.818 1.00 48.78 C
ATOM 22 P C B1088 44.937 104.891 119.046 1.00 55.49 P
ATOM 23 OP1 C B1088 44.340 106.238 119.321 1.00 54.59 O
ATOM 24 OP2 C B1088 46.349 104.625 119.438 1.00 54.31 O
ATOM 25 O5' C B1088 44.018 103.759 119.699 1.00 53.48 O
TER
Atoms:
C2: (43.418,98.491,119.964)
OP1: (44.340,106.238,119.321)
OP2: (46.349,104.625,119.438)
C4: (45.002,98.487,118.261)
O5': (44.018,103.759,119.699)
C3': (43.008,102.184,121.939)
C1': (42.105,100.538,120.490)
O4': (41.864,101.812,119.916)
C5': (42.705,104.065,120.221)
P: (44.937,104.891,119.046)
O2: (42.799,97.918,120.873)
C4': (42.114,102.848,120.902)
C2': (42.476,100.755,121.963)
O2': (41.323,100.613,122.773)
N1: (43.134,99.841,119.686)
N3: (44.358,97.846,119.235)
N4: (45.922,97.809,117.574)
C6: (43.803,100.489,118.681)
C5: (44.733,99.856,117.949)
O3': (42.881,102.812,123.211)
OP1: (44.340,106.238,119.321)
OP2: (46.349,104.625,119.438)
C4: (45.002,98.487,118.261)
O5': (44.018,103.759,119.699)
C3': (43.008,102.184,121.939)
C1': (42.105,100.538,120.490)
O4': (41.864,101.812,119.916)
C5': (42.705,104.065,120.221)
P: (44.937,104.891,119.046)
O2: (42.799,97.918,120.873)
C4': (42.114,102.848,120.902)
C2': (42.476,100.755,121.963)
O2': (41.323,100.613,122.773)
N1: (43.134,99.841,119.686)
N3: (44.358,97.846,119.235)
N4: (45.922,97.809,117.574)
C6: (43.803,100.489,118.681)
C5: (44.733,99.856,117.949)
O3': (42.881,102.812,123.211)
C4: (44.372,102.615,110.633)
N3: (43.948,103.822,111.134)
OP1: (48.963,100.285,117.492)
OP2: (47.755,99.147,115.546)
C2: (44.133,104.302,112.401)
C1': (45.057,103.917,114.637)
C3': (45.447,103.468,116.913)
O5': (47.460,101.582,115.992)
O4': (46.442,104.099,114.840)
C5': (47.897,102.896,116.361)
P: (48.441,100.335,116.107)
C4': (46.757,103.879,116.244)
C2': (44.623,102.954,115.739)
O2': (43.232,103.038,115.960)
N1: (44.833,103.455,113.258)
O4: (44.119,102.331,109.459)
O2: (43.711,105.395,112.738)
C6: (45.289,102.228,112.818)
C5: (45.088,101.790,111.570)
O3': (44.823,104.614,117.467)
N3: (43.948,103.822,111.134)
OP1: (48.963,100.285,117.492)
OP2: (47.755,99.147,115.546)
C2: (44.133,104.302,112.401)
C1': (45.057,103.917,114.637)
C3': (45.447,103.468,116.913)
O5': (47.460,101.582,115.992)
O4': (46.442,104.099,114.840)
C5': (47.897,102.896,116.361)
P: (48.441,100.335,116.107)
C4': (46.757,103.879,116.244)
C2': (44.623,102.954,115.739)
O2': (43.232,103.038,115.960)
N1: (44.833,103.455,113.258)
O4: (44.119,102.331,109.459)
O2: (43.711,105.395,112.738)
C6: (45.289,102.228,112.818)
C5: (45.088,101.790,111.570)
O3': (44.823,104.614,117.467)
Image (generated by PyMOL):