Doublet info:
Details
Nucleotide types:
CU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:11440:11439
Extra
PDB:
ATOM 1 O3' U A1439 48.676 37.307 109.803 1.00 52.30 O
ATOM 2 P C A1440 48.749 38.587 110.765 1.00 55.29 P
ATOM 3 OP1 C A1440 48.142 39.759 110.013 1.00 55.41 O
ATOM 4 OP2 C A1440 50.152 38.705 111.230 1.00 55.54 O
ATOM 5 O5' C A1440 47.827 38.159 111.990 1.00 55.50 O
ATOM 6 C5' C A1440 46.507 38.636 112.116 1.00 55.64 C
ATOM 7 C4' C A1440 46.268 39.167 113.488 1.00 56.24 C
ATOM 8 O4' C A1440 46.541 38.139 114.469 1.00 56.24 O
ATOM 9 C3' C A1440 47.142 40.320 113.893 1.00 56.77 C
ATOM 10 O3' C A1440 46.598 41.530 113.445 1.00 57.00 O
ATOM 11 C2' C A1440 47.170 40.198 115.408 1.00 57.23 C
ATOM 12 O2' C A1440 45.971 40.697 115.952 1.00 57.53 O
ATOM 13 C1' C A1440 47.146 38.694 115.600 1.00 56.82 C
ATOM 14 N1 C A1440 48.476 38.083 115.740 1.00 56.73 N
ATOM 15 C2 C A1440 49.415 38.350 116.733 1.00 57.20 C
ATOM 16 O2 C A1440 49.233 39.235 117.577 1.00 57.76 O
ATOM 17 N3 C A1440 50.563 37.629 116.755 1.00 57.05 N
ATOM 18 C4 C A1440 50.775 36.668 115.866 1.00 56.47 C
ATOM 19 N4 C A1440 51.907 36.009 115.953 1.00 56.37 N
ATOM 20 C5 C A1440 49.847 36.342 114.854 1.00 55.98 C
ATOM 21 C6 C A1440 48.733 37.076 114.862 1.00 56.14 C
ATOM 22 P C A1441 47.508 42.656 112.745 1.00 54.31 P
ATOM 23 OP1 C A1441 46.596 43.800 112.446 1.00 54.57 O
ATOM 24 OP2 C A1441 48.307 42.003 111.558 1.00 53.75 O
ATOM 25 O5' C A1441 48.487 43.056 113.931 1.00 54.87 O
TER
ATOM 1 O3' U B1438 51.956 33.766 113.515 1.00 48.36 O
ATOM 2 P U B1439 52.435 34.367 112.119 1.00 52.36 P
ATOM 3 OP1 U B1439 53.035 33.233 111.336 1.00 51.83 O
ATOM 4 OP2 U B1439 53.274 35.576 112.428 1.00 52.86 O
ATOM 5 O5' U B1439 51.059 34.824 111.466 1.00 52.20 O
ATOM 6 C5' U B1439 50.945 35.063 110.078 1.00 51.83 C
ATOM 7 C4' U B1439 49.523 35.026 109.661 1.00 51.62 C
ATOM 8 O4' U B1439 48.956 33.742 110.022 1.00 51.34 O
ATOM 9 C3' U B1439 48.623 36.016 110.364 1.00 52.08 C
ATOM 10 O3' U B1439 48.676 37.307 109.803 1.00 52.30 O
ATOM 11 C2' U B1439 47.250 35.374 110.254 1.00 51.80 C
ATOM 12 O2' U B1439 46.663 35.693 109.023 1.00 51.51 O
ATOM 13 C1' U B1439 47.576 33.895 110.233 1.00 51.39 C
ATOM 14 N1 U B1439 47.144 33.212 111.461 1.00 51.55 N
ATOM 15 C2 U B1439 46.636 31.996 111.088 1.00 51.09 C
ATOM 16 O2 U B1439 46.779 31.740 109.924 1.00 50.67 O
ATOM 17 N3 U B1439 46.082 31.104 111.952 1.00 51.10 N
ATOM 18 C4 U B1439 45.958 31.421 113.254 1.00 51.58 C
ATOM 19 O4 U B1439 45.454 30.565 114.018 1.00 51.59 O
ATOM 20 C5 U B1439 46.494 32.757 113.551 1.00 52.06 C
ATOM 21 C6 U B1439 47.045 33.659 112.720 1.00 52.07 C
ATOM 22 P C B1440 48.749 38.587 110.765 1.00 55.29 P
ATOM 23 OP1 C B1440 48.142 39.759 110.013 1.00 55.41 O
ATOM 24 OP2 C B1440 50.152 38.705 111.230 1.00 55.54 O
ATOM 25 O5' C B1440 47.827 38.159 111.990 1.00 55.50 O
TER
ATOM 2 P C A1440 48.749 38.587 110.765 1.00 55.29 P
ATOM 3 OP1 C A1440 48.142 39.759 110.013 1.00 55.41 O
ATOM 4 OP2 C A1440 50.152 38.705 111.230 1.00 55.54 O
ATOM 5 O5' C A1440 47.827 38.159 111.990 1.00 55.50 O
ATOM 6 C5' C A1440 46.507 38.636 112.116 1.00 55.64 C
ATOM 7 C4' C A1440 46.268 39.167 113.488 1.00 56.24 C
ATOM 8 O4' C A1440 46.541 38.139 114.469 1.00 56.24 O
ATOM 9 C3' C A1440 47.142 40.320 113.893 1.00 56.77 C
ATOM 10 O3' C A1440 46.598 41.530 113.445 1.00 57.00 O
ATOM 11 C2' C A1440 47.170 40.198 115.408 1.00 57.23 C
ATOM 12 O2' C A1440 45.971 40.697 115.952 1.00 57.53 O
ATOM 13 C1' C A1440 47.146 38.694 115.600 1.00 56.82 C
ATOM 14 N1 C A1440 48.476 38.083 115.740 1.00 56.73 N
ATOM 15 C2 C A1440 49.415 38.350 116.733 1.00 57.20 C
ATOM 16 O2 C A1440 49.233 39.235 117.577 1.00 57.76 O
ATOM 17 N3 C A1440 50.563 37.629 116.755 1.00 57.05 N
ATOM 18 C4 C A1440 50.775 36.668 115.866 1.00 56.47 C
ATOM 19 N4 C A1440 51.907 36.009 115.953 1.00 56.37 N
ATOM 20 C5 C A1440 49.847 36.342 114.854 1.00 55.98 C
ATOM 21 C6 C A1440 48.733 37.076 114.862 1.00 56.14 C
ATOM 22 P C A1441 47.508 42.656 112.745 1.00 54.31 P
ATOM 23 OP1 C A1441 46.596 43.800 112.446 1.00 54.57 O
ATOM 24 OP2 C A1441 48.307 42.003 111.558 1.00 53.75 O
ATOM 25 O5' C A1441 48.487 43.056 113.931 1.00 54.87 O
TER
ATOM 1 O3' U B1438 51.956 33.766 113.515 1.00 48.36 O
ATOM 2 P U B1439 52.435 34.367 112.119 1.00 52.36 P
ATOM 3 OP1 U B1439 53.035 33.233 111.336 1.00 51.83 O
ATOM 4 OP2 U B1439 53.274 35.576 112.428 1.00 52.86 O
ATOM 5 O5' U B1439 51.059 34.824 111.466 1.00 52.20 O
ATOM 6 C5' U B1439 50.945 35.063 110.078 1.00 51.83 C
ATOM 7 C4' U B1439 49.523 35.026 109.661 1.00 51.62 C
ATOM 8 O4' U B1439 48.956 33.742 110.022 1.00 51.34 O
ATOM 9 C3' U B1439 48.623 36.016 110.364 1.00 52.08 C
ATOM 10 O3' U B1439 48.676 37.307 109.803 1.00 52.30 O
ATOM 11 C2' U B1439 47.250 35.374 110.254 1.00 51.80 C
ATOM 12 O2' U B1439 46.663 35.693 109.023 1.00 51.51 O
ATOM 13 C1' U B1439 47.576 33.895 110.233 1.00 51.39 C
ATOM 14 N1 U B1439 47.144 33.212 111.461 1.00 51.55 N
ATOM 15 C2 U B1439 46.636 31.996 111.088 1.00 51.09 C
ATOM 16 O2 U B1439 46.779 31.740 109.924 1.00 50.67 O
ATOM 17 N3 U B1439 46.082 31.104 111.952 1.00 51.10 N
ATOM 18 C4 U B1439 45.958 31.421 113.254 1.00 51.58 C
ATOM 19 O4 U B1439 45.454 30.565 114.018 1.00 51.59 O
ATOM 20 C5 U B1439 46.494 32.757 113.551 1.00 52.06 C
ATOM 21 C6 U B1439 47.045 33.659 112.720 1.00 52.07 C
ATOM 22 P C B1440 48.749 38.587 110.765 1.00 55.29 P
ATOM 23 OP1 C B1440 48.142 39.759 110.013 1.00 55.41 O
ATOM 24 OP2 C B1440 50.152 38.705 111.230 1.00 55.54 O
ATOM 25 O5' C B1440 47.827 38.159 111.990 1.00 55.50 O
TER
Atoms:
C2: (49.415,38.350,116.733)
OP1: (48.142,39.759,110.013)
OP2: (50.152,38.705,111.230)
C4: (50.775,36.668,115.866)
O5': (47.827,38.159,111.990)
C3': (47.142,40.320,113.893)
C1': (47.146,38.694,115.600)
O4': (46.541,38.139,114.469)
C5': (46.507,38.636,112.116)
P: (48.749,38.587,110.765)
O2: (49.233,39.235,117.577)
C4': (46.268,39.167,113.488)
C2': (47.170,40.198,115.408)
O2': (45.971,40.697,115.952)
N1: (48.476,38.083,115.740)
N3: (50.563,37.629,116.755)
N4: (51.907,36.009,115.953)
C6: (48.733,37.076,114.862)
C5: (49.847,36.342,114.854)
O3': (46.598,41.530,113.445)
OP1: (48.142,39.759,110.013)
OP2: (50.152,38.705,111.230)
C4: (50.775,36.668,115.866)
O5': (47.827,38.159,111.990)
C3': (47.142,40.320,113.893)
C1': (47.146,38.694,115.600)
O4': (46.541,38.139,114.469)
C5': (46.507,38.636,112.116)
P: (48.749,38.587,110.765)
O2: (49.233,39.235,117.577)
C4': (46.268,39.167,113.488)
C2': (47.170,40.198,115.408)
O2': (45.971,40.697,115.952)
N1: (48.476,38.083,115.740)
N3: (50.563,37.629,116.755)
N4: (51.907,36.009,115.953)
C6: (48.733,37.076,114.862)
C5: (49.847,36.342,114.854)
O3': (46.598,41.530,113.445)
C4: (45.958,31.421,113.254)
N3: (46.082,31.104,111.952)
OP1: (53.035,33.233,111.336)
OP2: (53.274,35.576,112.428)
C2: (46.636,31.996,111.088)
C1': (47.576,33.895,110.233)
C3': (48.623,36.016,110.364)
O5': (51.059,34.824,111.466)
O4': (48.956,33.742,110.022)
C5': (50.945,35.063,110.078)
P: (52.435,34.367,112.119)
C4': (49.523,35.026,109.661)
C2': (47.250,35.374,110.254)
O2': (46.663,35.693,109.023)
N1: (47.144,33.212,111.461)
O4: (45.454,30.565,114.018)
O2: (46.779,31.740,109.924)
C6: (47.045,33.659,112.720)
C5: (46.494,32.757,113.551)
O3': (48.676,37.307,109.803)
N3: (46.082,31.104,111.952)
OP1: (53.035,33.233,111.336)
OP2: (53.274,35.576,112.428)
C2: (46.636,31.996,111.088)
C1': (47.576,33.895,110.233)
C3': (48.623,36.016,110.364)
O5': (51.059,34.824,111.466)
O4': (48.956,33.742,110.022)
C5': (50.945,35.063,110.078)
P: (52.435,34.367,112.119)
C4': (49.523,35.026,109.661)
C2': (47.250,35.374,110.254)
O2': (46.663,35.693,109.023)
N1: (47.144,33.212,111.461)
O4: (45.454,30.565,114.018)
O2: (46.779,31.740,109.924)
C6: (47.045,33.659,112.720)
C5: (46.494,32.757,113.551)
O3': (48.676,37.307,109.803)
Image (generated by PyMOL):