Doublet info:
Details
Nucleotide types:
CU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJW:01088:01087
Extra
PDB:
ATOM 1 O3' U A1087 44.918 105.471 117.249 1.00 41.10 O
ATOM 2 P C A1088 45.002 105.799 118.823 1.00 45.53 P
ATOM 3 OP1 C A1088 44.442 107.164 119.044 1.00 44.59 O
ATOM 4 OP2 C A1088 46.384 105.488 119.287 1.00 45.64 O
ATOM 5 O5' C A1088 44.027 104.729 119.491 1.00 46.54 O
ATOM 6 C5' C A1088 42.686 105.073 119.875 1.00 46.60 C
ATOM 7 C4' C A1088 42.003 103.879 120.491 1.00 47.84 C
ATOM 8 O4' C A1088 41.764 102.872 119.476 1.00 46.85 O
ATOM 9 C3' C A1088 42.800 103.140 121.552 1.00 49.19 C
ATOM 10 O3' C A1088 42.693 103.762 122.818 1.00 52.71 O
ATOM 11 C2' C A1088 42.124 101.780 121.561 1.00 49.12 C
ATOM 12 O2' C A1088 40.924 101.780 122.309 1.00 49.43 O
ATOM 13 C1' C A1088 41.820 101.585 120.071 1.00 47.25 C
ATOM 14 N1 C A1088 42.840 100.777 119.377 1.00 46.21 N
ATOM 15 C2 C A1088 42.937 99.414 119.682 1.00 47.44 C
ATOM 16 O2 C A1088 42.146 98.922 120.507 1.00 49.21 O
ATOM 17 N3 C A1088 43.879 98.664 119.073 1.00 47.29 N
ATOM 18 C4 C A1088 44.698 99.219 118.182 1.00 46.46 C
ATOM 19 N4 C A1088 45.614 98.435 117.608 1.00 45.92 N
ATOM 20 C5 C A1088 44.615 100.598 117.841 1.00 46.28 C
ATOM 21 C6 C A1088 43.683 101.334 118.458 1.00 45.17 C
ATOM 22 P U A1089 43.944 104.565 123.417 1.00 55.95 P
ATOM 23 OP1 U A1089 43.573 104.970 124.796 1.00 55.76 O
ATOM 24 OP2 U A1089 44.377 105.596 122.433 1.00 57.21 O
ATOM 25 O5' U A1089 45.101 103.488 123.504 1.00 58.67 O
TER
ATOM 1 O3' C B1086 49.583 101.317 114.942 1.00 42.66 O
ATOM 2 P U B1087 48.380 100.950 115.947 1.00 42.61 P
ATOM 3 OP1 U B1087 48.963 100.881 117.312 1.00 40.03 O
ATOM 4 OP2 U B1087 47.650 99.777 115.397 1.00 41.51 O
ATOM 5 O5' U B1087 47.415 102.209 115.889 1.00 41.19 O
ATOM 6 C5' U B1087 47.876 103.486 116.321 1.00 39.81 C
ATOM 7 C4' U B1087 46.811 104.527 116.104 1.00 39.86 C
ATOM 8 O4' U B1087 46.560 104.654 114.674 1.00 38.64 O
ATOM 9 C3' U B1087 45.456 104.249 116.754 1.00 38.72 C
ATOM 10 O3' U B1087 44.918 105.471 117.249 1.00 41.10 O
ATOM 11 C2' U B1087 44.624 103.760 115.573 1.00 38.26 C
ATOM 12 O2' U B1087 43.237 103.957 115.731 1.00 37.89 O
ATOM 13 C1' U B1087 45.172 104.641 114.457 1.00 37.95 C
ATOM 14 N1 U B1087 44.904 104.196 113.083 1.00 37.33 N
ATOM 15 C2 U B1087 44.329 105.116 112.223 1.00 37.86 C
ATOM 16 O2 U B1087 44.076 106.267 112.553 1.00 38.27 O
ATOM 17 N3 U B1087 44.063 104.643 110.960 1.00 36.94 N
ATOM 18 C4 U B1087 44.312 103.374 110.478 1.00 36.83 C
ATOM 19 O4 U B1087 43.984 103.089 109.323 1.00 36.20 O
ATOM 20 C5 U B1087 44.926 102.488 111.421 1.00 36.90 C
ATOM 21 C6 U B1087 45.196 102.919 112.660 1.00 37.58 C
ATOM 22 P C B1088 45.002 105.799 118.823 1.00 45.53 P
ATOM 23 OP1 C B1088 44.442 107.164 119.044 1.00 44.59 O
ATOM 24 OP2 C B1088 46.384 105.488 119.287 1.00 45.64 O
ATOM 25 O5' C B1088 44.027 104.729 119.491 1.00 46.54 O
TER
ATOM 2 P C A1088 45.002 105.799 118.823 1.00 45.53 P
ATOM 3 OP1 C A1088 44.442 107.164 119.044 1.00 44.59 O
ATOM 4 OP2 C A1088 46.384 105.488 119.287 1.00 45.64 O
ATOM 5 O5' C A1088 44.027 104.729 119.491 1.00 46.54 O
ATOM 6 C5' C A1088 42.686 105.073 119.875 1.00 46.60 C
ATOM 7 C4' C A1088 42.003 103.879 120.491 1.00 47.84 C
ATOM 8 O4' C A1088 41.764 102.872 119.476 1.00 46.85 O
ATOM 9 C3' C A1088 42.800 103.140 121.552 1.00 49.19 C
ATOM 10 O3' C A1088 42.693 103.762 122.818 1.00 52.71 O
ATOM 11 C2' C A1088 42.124 101.780 121.561 1.00 49.12 C
ATOM 12 O2' C A1088 40.924 101.780 122.309 1.00 49.43 O
ATOM 13 C1' C A1088 41.820 101.585 120.071 1.00 47.25 C
ATOM 14 N1 C A1088 42.840 100.777 119.377 1.00 46.21 N
ATOM 15 C2 C A1088 42.937 99.414 119.682 1.00 47.44 C
ATOM 16 O2 C A1088 42.146 98.922 120.507 1.00 49.21 O
ATOM 17 N3 C A1088 43.879 98.664 119.073 1.00 47.29 N
ATOM 18 C4 C A1088 44.698 99.219 118.182 1.00 46.46 C
ATOM 19 N4 C A1088 45.614 98.435 117.608 1.00 45.92 N
ATOM 20 C5 C A1088 44.615 100.598 117.841 1.00 46.28 C
ATOM 21 C6 C A1088 43.683 101.334 118.458 1.00 45.17 C
ATOM 22 P U A1089 43.944 104.565 123.417 1.00 55.95 P
ATOM 23 OP1 U A1089 43.573 104.970 124.796 1.00 55.76 O
ATOM 24 OP2 U A1089 44.377 105.596 122.433 1.00 57.21 O
ATOM 25 O5' U A1089 45.101 103.488 123.504 1.00 58.67 O
TER
ATOM 1 O3' C B1086 49.583 101.317 114.942 1.00 42.66 O
ATOM 2 P U B1087 48.380 100.950 115.947 1.00 42.61 P
ATOM 3 OP1 U B1087 48.963 100.881 117.312 1.00 40.03 O
ATOM 4 OP2 U B1087 47.650 99.777 115.397 1.00 41.51 O
ATOM 5 O5' U B1087 47.415 102.209 115.889 1.00 41.19 O
ATOM 6 C5' U B1087 47.876 103.486 116.321 1.00 39.81 C
ATOM 7 C4' U B1087 46.811 104.527 116.104 1.00 39.86 C
ATOM 8 O4' U B1087 46.560 104.654 114.674 1.00 38.64 O
ATOM 9 C3' U B1087 45.456 104.249 116.754 1.00 38.72 C
ATOM 10 O3' U B1087 44.918 105.471 117.249 1.00 41.10 O
ATOM 11 C2' U B1087 44.624 103.760 115.573 1.00 38.26 C
ATOM 12 O2' U B1087 43.237 103.957 115.731 1.00 37.89 O
ATOM 13 C1' U B1087 45.172 104.641 114.457 1.00 37.95 C
ATOM 14 N1 U B1087 44.904 104.196 113.083 1.00 37.33 N
ATOM 15 C2 U B1087 44.329 105.116 112.223 1.00 37.86 C
ATOM 16 O2 U B1087 44.076 106.267 112.553 1.00 38.27 O
ATOM 17 N3 U B1087 44.063 104.643 110.960 1.00 36.94 N
ATOM 18 C4 U B1087 44.312 103.374 110.478 1.00 36.83 C
ATOM 19 O4 U B1087 43.984 103.089 109.323 1.00 36.20 O
ATOM 20 C5 U B1087 44.926 102.488 111.421 1.00 36.90 C
ATOM 21 C6 U B1087 45.196 102.919 112.660 1.00 37.58 C
ATOM 22 P C B1088 45.002 105.799 118.823 1.00 45.53 P
ATOM 23 OP1 C B1088 44.442 107.164 119.044 1.00 44.59 O
ATOM 24 OP2 C B1088 46.384 105.488 119.287 1.00 45.64 O
ATOM 25 O5' C B1088 44.027 104.729 119.491 1.00 46.54 O
TER
Atoms:
C2: (42.937,99.414,119.682)
OP1: (44.442,107.164,119.044)
OP2: (46.384,105.488,119.287)
C4: (44.698,99.219,118.182)
O5': (44.027,104.729,119.491)
C3': (42.800,103.140,121.552)
C1': (41.820,101.585,120.071)
O4': (41.764,102.872,119.476)
C5': (42.686,105.073,119.875)
P: (45.002,105.799,118.823)
O2: (42.146,98.922,120.507)
C4': (42.003,103.879,120.491)
C2': (42.124,101.780,121.561)
O2': (40.924,101.780,122.309)
N1: (42.840,100.777,119.377)
N3: (43.879,98.664,119.073)
N4: (45.614,98.435,117.608)
C6: (43.683,101.334,118.458)
C5: (44.615,100.598,117.841)
O3': (42.693,103.762,122.818)
OP1: (44.442,107.164,119.044)
OP2: (46.384,105.488,119.287)
C4: (44.698,99.219,118.182)
O5': (44.027,104.729,119.491)
C3': (42.800,103.140,121.552)
C1': (41.820,101.585,120.071)
O4': (41.764,102.872,119.476)
C5': (42.686,105.073,119.875)
P: (45.002,105.799,118.823)
O2: (42.146,98.922,120.507)
C4': (42.003,103.879,120.491)
C2': (42.124,101.780,121.561)
O2': (40.924,101.780,122.309)
N1: (42.840,100.777,119.377)
N3: (43.879,98.664,119.073)
N4: (45.614,98.435,117.608)
C6: (43.683,101.334,118.458)
C5: (44.615,100.598,117.841)
O3': (42.693,103.762,122.818)
C4: (44.312,103.374,110.478)
N3: (44.063,104.643,110.960)
OP1: (48.963,100.881,117.312)
OP2: (47.650,99.777,115.397)
C2: (44.329,105.116,112.223)
C1': (45.172,104.641,114.457)
C3': (45.456,104.249,116.754)
O5': (47.415,102.209,115.889)
O4': (46.560,104.654,114.674)
C5': (47.876,103.486,116.321)
P: (48.380,100.950,115.947)
C4': (46.811,104.527,116.104)
C2': (44.624,103.760,115.573)
O2': (43.237,103.957,115.731)
N1: (44.904,104.196,113.083)
O4: (43.984,103.089,109.323)
O2: (44.076,106.267,112.553)
C6: (45.196,102.919,112.660)
C5: (44.926,102.488,111.421)
O3': (44.918,105.471,117.249)
N3: (44.063,104.643,110.960)
OP1: (48.963,100.881,117.312)
OP2: (47.650,99.777,115.397)
C2: (44.329,105.116,112.223)
C1': (45.172,104.641,114.457)
C3': (45.456,104.249,116.754)
O5': (47.415,102.209,115.889)
O4': (46.560,104.654,114.674)
C5': (47.876,103.486,116.321)
P: (48.380,100.950,115.947)
C4': (46.811,104.527,116.104)
C2': (44.624,103.760,115.573)
O2': (43.237,103.957,115.731)
N1: (44.904,104.196,113.083)
O4: (43.984,103.089,109.323)
O2: (44.076,106.267,112.553)
C6: (45.196,102.919,112.660)
C5: (44.926,102.488,111.421)
O3': (44.918,105.471,117.249)
Image (generated by PyMOL):