Doublet info:
Details
Nucleotide types:
CU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJN:02023:02022
Extra
PDB:
ATOM 1 O3' U A2022 35.308 121.880 104.104 1.00 39.00 O
ATOM 2 P C A2023 34.437 120.948 105.062 1.00 39.58 P
ATOM 3 OP1 C A2023 33.078 120.875 104.486 1.00 38.81 O
ATOM 4 OP2 C A2023 34.629 121.455 106.446 1.00 39.86 O
ATOM 5 O5' C A2023 35.136 119.525 104.962 1.00 38.31 O
ATOM 6 C5' C A2023 34.679 118.538 104.032 1.00 38.08 C
ATOM 7 C4' C A2023 35.078 117.165 104.508 1.00 38.40 C
ATOM 8 O4' C A2023 36.515 117.022 104.444 1.00 37.46 O
ATOM 9 C3' C A2023 34.706 116.872 105.946 1.00 38.49 C
ATOM 10 O3' C A2023 33.378 116.352 105.969 1.00 40.28 O
ATOM 11 C2' C A2023 35.742 115.829 106.347 1.00 38.57 C
ATOM 12 O2' C A2023 35.408 114.530 105.909 1.00 41.22 O
ATOM 13 C1' C A2023 36.970 116.292 105.560 1.00 37.98 C
ATOM 14 N1 C A2023 37.906 117.145 106.304 1.00 39.85 N
ATOM 15 C2 C A2023 38.684 116.580 107.319 1.00 40.43 C
ATOM 16 O2 C A2023 38.548 115.376 107.587 1.00 40.40 O
ATOM 17 N3 C A2023 39.561 117.363 107.985 1.00 41.05 N
ATOM 18 C4 C A2023 39.671 118.656 107.677 1.00 41.09 C
ATOM 19 N4 C A2023 40.542 119.389 108.360 1.00 42.95 N
ATOM 20 C5 C A2023 38.889 119.255 106.657 1.00 40.84 C
ATOM 21 C6 C A2023 38.026 118.474 106.004 1.00 40.69 C
ATOM 22 P U A2024 32.332 116.842 107.085 1.00 41.67 P
ATOM 23 OP1 U A2024 31.058 116.179 106.697 1.00 40.07 O
ATOM 24 OP2 U A2024 32.385 118.321 107.234 1.00 40.46 O
ATOM 25 O5' U A2024 32.864 116.190 108.433 1.00 38.50 O
TER
ATOM 1 O3' G B2021 40.399 124.570 107.288 1.00 37.33 O
ATOM 2 P U B2022 40.213 123.063 106.775 1.00 39.06 P
ATOM 3 OP1 U B2022 39.757 122.283 107.946 1.00 38.05 O
ATOM 4 OP2 U B2022 41.451 122.669 106.057 1.00 35.76 O
ATOM 5 O5' U B2022 39.022 123.134 105.724 1.00 35.85 O
ATOM 6 C5' U B2022 37.785 123.754 106.069 1.00 36.98 C
ATOM 7 C4' U B2022 36.783 123.561 104.961 1.00 39.31 C
ATOM 8 O4' U B2022 37.141 124.385 103.817 1.00 40.55 O
ATOM 9 C3' U B2022 36.656 122.138 104.436 1.00 40.52 C
ATOM 10 O3' U B2022 35.308 121.880 104.104 1.00 39.00 O
ATOM 11 C2' U B2022 37.507 122.167 103.173 1.00 42.52 C
ATOM 12 O2' U B2022 37.144 121.207 102.194 1.00 46.84 O
ATOM 13 C1' U B2022 37.234 123.577 102.665 1.00 40.94 C
ATOM 14 N1 U B2022 38.330 124.068 101.823 1.00 40.61 N
ATOM 15 C2 U B2022 38.042 124.381 100.511 1.00 39.24 C
ATOM 16 O2 U B2022 36.922 124.326 100.051 1.00 37.09 O
ATOM 17 N3 U B2022 39.123 124.762 99.759 1.00 39.76 N
ATOM 18 C4 U B2022 40.431 124.866 100.182 1.00 41.33 C
ATOM 19 O4 U B2022 41.313 125.121 99.365 1.00 42.87 O
ATOM 20 C5 U B2022 40.637 124.562 101.561 1.00 42.20 C
ATOM 21 C6 U B2022 39.607 124.185 102.316 1.00 41.61 C
ATOM 22 P C B2023 34.437 120.948 105.062 1.00 39.58 P
ATOM 23 OP1 C B2023 33.078 120.875 104.486 1.00 38.81 O
ATOM 24 OP2 C B2023 34.629 121.455 106.446 1.00 39.86 O
ATOM 25 O5' C B2023 35.136 119.525 104.962 1.00 38.31 O
TER
ATOM 2 P C A2023 34.437 120.948 105.062 1.00 39.58 P
ATOM 3 OP1 C A2023 33.078 120.875 104.486 1.00 38.81 O
ATOM 4 OP2 C A2023 34.629 121.455 106.446 1.00 39.86 O
ATOM 5 O5' C A2023 35.136 119.525 104.962 1.00 38.31 O
ATOM 6 C5' C A2023 34.679 118.538 104.032 1.00 38.08 C
ATOM 7 C4' C A2023 35.078 117.165 104.508 1.00 38.40 C
ATOM 8 O4' C A2023 36.515 117.022 104.444 1.00 37.46 O
ATOM 9 C3' C A2023 34.706 116.872 105.946 1.00 38.49 C
ATOM 10 O3' C A2023 33.378 116.352 105.969 1.00 40.28 O
ATOM 11 C2' C A2023 35.742 115.829 106.347 1.00 38.57 C
ATOM 12 O2' C A2023 35.408 114.530 105.909 1.00 41.22 O
ATOM 13 C1' C A2023 36.970 116.292 105.560 1.00 37.98 C
ATOM 14 N1 C A2023 37.906 117.145 106.304 1.00 39.85 N
ATOM 15 C2 C A2023 38.684 116.580 107.319 1.00 40.43 C
ATOM 16 O2 C A2023 38.548 115.376 107.587 1.00 40.40 O
ATOM 17 N3 C A2023 39.561 117.363 107.985 1.00 41.05 N
ATOM 18 C4 C A2023 39.671 118.656 107.677 1.00 41.09 C
ATOM 19 N4 C A2023 40.542 119.389 108.360 1.00 42.95 N
ATOM 20 C5 C A2023 38.889 119.255 106.657 1.00 40.84 C
ATOM 21 C6 C A2023 38.026 118.474 106.004 1.00 40.69 C
ATOM 22 P U A2024 32.332 116.842 107.085 1.00 41.67 P
ATOM 23 OP1 U A2024 31.058 116.179 106.697 1.00 40.07 O
ATOM 24 OP2 U A2024 32.385 118.321 107.234 1.00 40.46 O
ATOM 25 O5' U A2024 32.864 116.190 108.433 1.00 38.50 O
TER
ATOM 1 O3' G B2021 40.399 124.570 107.288 1.00 37.33 O
ATOM 2 P U B2022 40.213 123.063 106.775 1.00 39.06 P
ATOM 3 OP1 U B2022 39.757 122.283 107.946 1.00 38.05 O
ATOM 4 OP2 U B2022 41.451 122.669 106.057 1.00 35.76 O
ATOM 5 O5' U B2022 39.022 123.134 105.724 1.00 35.85 O
ATOM 6 C5' U B2022 37.785 123.754 106.069 1.00 36.98 C
ATOM 7 C4' U B2022 36.783 123.561 104.961 1.00 39.31 C
ATOM 8 O4' U B2022 37.141 124.385 103.817 1.00 40.55 O
ATOM 9 C3' U B2022 36.656 122.138 104.436 1.00 40.52 C
ATOM 10 O3' U B2022 35.308 121.880 104.104 1.00 39.00 O
ATOM 11 C2' U B2022 37.507 122.167 103.173 1.00 42.52 C
ATOM 12 O2' U B2022 37.144 121.207 102.194 1.00 46.84 O
ATOM 13 C1' U B2022 37.234 123.577 102.665 1.00 40.94 C
ATOM 14 N1 U B2022 38.330 124.068 101.823 1.00 40.61 N
ATOM 15 C2 U B2022 38.042 124.381 100.511 1.00 39.24 C
ATOM 16 O2 U B2022 36.922 124.326 100.051 1.00 37.09 O
ATOM 17 N3 U B2022 39.123 124.762 99.759 1.00 39.76 N
ATOM 18 C4 U B2022 40.431 124.866 100.182 1.00 41.33 C
ATOM 19 O4 U B2022 41.313 125.121 99.365 1.00 42.87 O
ATOM 20 C5 U B2022 40.637 124.562 101.561 1.00 42.20 C
ATOM 21 C6 U B2022 39.607 124.185 102.316 1.00 41.61 C
ATOM 22 P C B2023 34.437 120.948 105.062 1.00 39.58 P
ATOM 23 OP1 C B2023 33.078 120.875 104.486 1.00 38.81 O
ATOM 24 OP2 C B2023 34.629 121.455 106.446 1.00 39.86 O
ATOM 25 O5' C B2023 35.136 119.525 104.962 1.00 38.31 O
TER
Atoms:
C2: (38.684,116.580,107.319)
OP1: (33.078,120.875,104.486)
OP2: (34.629,121.455,106.446)
C4: (39.671,118.656,107.677)
O5': (35.136,119.525,104.962)
C3': (34.706,116.872,105.946)
C1': (36.970,116.292,105.560)
O4': (36.515,117.022,104.444)
C5': (34.679,118.538,104.032)
P: (34.437,120.948,105.062)
O2: (38.548,115.376,107.587)
C4': (35.078,117.165,104.508)
C2': (35.742,115.829,106.347)
O2': (35.408,114.530,105.909)
N1: (37.906,117.145,106.304)
N3: (39.561,117.363,107.985)
N4: (40.542,119.389,108.360)
C6: (38.026,118.474,106.004)
C5: (38.889,119.255,106.657)
O3': (33.378,116.352,105.969)
OP1: (33.078,120.875,104.486)
OP2: (34.629,121.455,106.446)
C4: (39.671,118.656,107.677)
O5': (35.136,119.525,104.962)
C3': (34.706,116.872,105.946)
C1': (36.970,116.292,105.560)
O4': (36.515,117.022,104.444)
C5': (34.679,118.538,104.032)
P: (34.437,120.948,105.062)
O2: (38.548,115.376,107.587)
C4': (35.078,117.165,104.508)
C2': (35.742,115.829,106.347)
O2': (35.408,114.530,105.909)
N1: (37.906,117.145,106.304)
N3: (39.561,117.363,107.985)
N4: (40.542,119.389,108.360)
C6: (38.026,118.474,106.004)
C5: (38.889,119.255,106.657)
O3': (33.378,116.352,105.969)
C4: (40.431,124.866,100.182)
N3: (39.123,124.762,99.759)
OP1: (39.757,122.283,107.946)
OP2: (41.451,122.669,106.057)
C2: (38.042,124.381,100.511)
C1': (37.234,123.577,102.665)
C3': (36.656,122.138,104.436)
O5': (39.022,123.134,105.724)
O4': (37.141,124.385,103.817)
C5': (37.785,123.754,106.069)
P: (40.213,123.063,106.775)
C4': (36.783,123.561,104.961)
C2': (37.507,122.167,103.173)
O2': (37.144,121.207,102.194)
N1: (38.330,124.068,101.823)
O4: (41.313,125.121,99.365)
O2: (36.922,124.326,100.051)
C6: (39.607,124.185,102.316)
C5: (40.637,124.562,101.561)
O3': (35.308,121.880,104.104)
N3: (39.123,124.762,99.759)
OP1: (39.757,122.283,107.946)
OP2: (41.451,122.669,106.057)
C2: (38.042,124.381,100.511)
C1': (37.234,123.577,102.665)
C3': (36.656,122.138,104.436)
O5': (39.022,123.134,105.724)
O4': (37.141,124.385,103.817)
C5': (37.785,123.754,106.069)
P: (40.213,123.063,106.775)
C4': (36.783,123.561,104.961)
C2': (37.507,122.167,103.173)
O2': (37.144,121.207,102.194)
N1: (38.330,124.068,101.823)
O4: (41.313,125.121,99.365)
O2: (36.922,124.326,100.051)
C6: (39.607,124.185,102.316)
C5: (40.637,124.562,101.561)
O3': (35.308,121.880,104.104)
Image (generated by PyMOL):