Doublet info:
Details
Nucleotide types:
CU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:01088:01087
Extra
PDB:
ATOM 1 O3' U A1087 45.079 105.802 117.301 1.00 47.57 O
ATOM 2 P C A1088 45.058 106.120 118.870 1.00 51.73 P
ATOM 3 OP1 C A1088 44.465 107.478 119.041 1.00 51.39 O
ATOM 4 OP2 C A1088 46.415 105.838 119.412 1.00 51.27 O
ATOM 5 O5' C A1088 44.054 105.029 119.463 1.00 52.42 O
ATOM 6 C5' C A1088 42.760 105.398 119.979 1.00 49.82 C
ATOM 7 C4' C A1088 42.092 104.197 120.605 1.00 51.27 C
ATOM 8 O4' C A1088 41.830 103.197 119.586 1.00 49.46 O
ATOM 9 C3' C A1088 42.913 103.454 121.645 1.00 52.33 C
ATOM 10 O3' C A1088 42.818 104.065 122.923 1.00 55.80 O
ATOM 11 C2' C A1088 42.259 102.079 121.644 1.00 51.99 C
ATOM 12 O2' C A1088 41.076 102.046 122.416 1.00 51.98 O
ATOM 13 C1' C A1088 41.925 101.901 120.158 1.00 49.53 C
ATOM 14 N1 C A1088 42.937 101.121 119.414 1.00 48.04 N
ATOM 15 C2 C A1088 43.055 99.743 119.676 1.00 47.47 C
ATOM 16 O2 C A1088 42.296 99.215 120.504 1.00 48.84 O
ATOM 17 N3 C A1088 43.992 99.025 119.021 1.00 46.74 N
ATOM 18 C4 C A1088 44.793 99.619 118.135 1.00 46.91 C
ATOM 19 N4 C A1088 45.719 98.867 117.535 1.00 44.96 N
ATOM 20 C5 C A1088 44.684 101.009 117.832 1.00 46.94 C
ATOM 21 C6 C A1088 43.753 101.716 118.490 1.00 47.69 C
ATOM 22 P U A1089 44.084 104.844 123.535 1.00 60.01 P
ATOM 23 OP1 U A1089 43.752 105.215 124.935 1.00 58.36 O
ATOM 24 OP2 U A1089 44.504 105.898 122.571 1.00 60.44 O
ATOM 25 O5' U A1089 45.231 103.750 123.585 1.00 61.65 O
TER
ATOM 1 O3' C B1086 49.684 101.587 115.050 1.00 42.45 O
ATOM 2 P U B1087 48.498 101.271 116.094 1.00 43.38 P
ATOM 3 OP1 U B1087 49.084 101.244 117.457 1.00 41.73 O
ATOM 4 OP2 U B1087 47.751 100.085 115.593 1.00 42.63 O
ATOM 5 O5' U B1087 47.550 102.545 115.997 1.00 42.63 O
ATOM 6 C5' U B1087 48.043 103.842 116.345 1.00 43.15 C
ATOM 7 C4' U B1087 46.967 104.879 116.166 1.00 44.78 C
ATOM 8 O4' U B1087 46.677 105.041 114.749 1.00 46.23 O
ATOM 9 C3' U B1087 45.631 104.582 116.842 1.00 45.19 C
ATOM 10 O3' U B1087 45.079 105.802 117.301 1.00 47.57 O
ATOM 11 C2' U B1087 44.785 104.054 115.689 1.00 45.01 C
ATOM 12 O2' U B1087 43.401 104.241 115.888 1.00 45.47 O
ATOM 13 C1' U B1087 45.284 104.932 114.546 1.00 44.31 C
ATOM 14 N1 U B1087 45.033 104.440 113.184 1.00 43.08 N
ATOM 15 C2 U B1087 44.446 105.325 112.290 1.00 42.52 C
ATOM 16 O2 U B1087 44.142 106.469 112.591 1.00 44.43 O
ATOM 17 N3 U B1087 44.226 104.824 111.032 1.00 40.76 N
ATOM 18 C4 U B1087 44.520 103.555 110.581 1.00 42.15 C
ATOM 19 O4 U B1087 44.252 103.253 109.418 1.00 39.57 O
ATOM 20 C5 U B1087 45.127 102.695 111.559 1.00 43.12 C
ATOM 21 C6 U B1087 45.358 103.158 112.797 1.00 43.73 C
ATOM 22 P C B1088 45.058 106.120 118.870 1.00 51.73 P
ATOM 23 OP1 C B1088 44.465 107.478 119.041 1.00 51.39 O
ATOM 24 OP2 C B1088 46.415 105.838 119.412 1.00 51.27 O
ATOM 25 O5' C B1088 44.054 105.029 119.463 1.00 52.42 O
TER
ATOM 2 P C A1088 45.058 106.120 118.870 1.00 51.73 P
ATOM 3 OP1 C A1088 44.465 107.478 119.041 1.00 51.39 O
ATOM 4 OP2 C A1088 46.415 105.838 119.412 1.00 51.27 O
ATOM 5 O5' C A1088 44.054 105.029 119.463 1.00 52.42 O
ATOM 6 C5' C A1088 42.760 105.398 119.979 1.00 49.82 C
ATOM 7 C4' C A1088 42.092 104.197 120.605 1.00 51.27 C
ATOM 8 O4' C A1088 41.830 103.197 119.586 1.00 49.46 O
ATOM 9 C3' C A1088 42.913 103.454 121.645 1.00 52.33 C
ATOM 10 O3' C A1088 42.818 104.065 122.923 1.00 55.80 O
ATOM 11 C2' C A1088 42.259 102.079 121.644 1.00 51.99 C
ATOM 12 O2' C A1088 41.076 102.046 122.416 1.00 51.98 O
ATOM 13 C1' C A1088 41.925 101.901 120.158 1.00 49.53 C
ATOM 14 N1 C A1088 42.937 101.121 119.414 1.00 48.04 N
ATOM 15 C2 C A1088 43.055 99.743 119.676 1.00 47.47 C
ATOM 16 O2 C A1088 42.296 99.215 120.504 1.00 48.84 O
ATOM 17 N3 C A1088 43.992 99.025 119.021 1.00 46.74 N
ATOM 18 C4 C A1088 44.793 99.619 118.135 1.00 46.91 C
ATOM 19 N4 C A1088 45.719 98.867 117.535 1.00 44.96 N
ATOM 20 C5 C A1088 44.684 101.009 117.832 1.00 46.94 C
ATOM 21 C6 C A1088 43.753 101.716 118.490 1.00 47.69 C
ATOM 22 P U A1089 44.084 104.844 123.535 1.00 60.01 P
ATOM 23 OP1 U A1089 43.752 105.215 124.935 1.00 58.36 O
ATOM 24 OP2 U A1089 44.504 105.898 122.571 1.00 60.44 O
ATOM 25 O5' U A1089 45.231 103.750 123.585 1.00 61.65 O
TER
ATOM 1 O3' C B1086 49.684 101.587 115.050 1.00 42.45 O
ATOM 2 P U B1087 48.498 101.271 116.094 1.00 43.38 P
ATOM 3 OP1 U B1087 49.084 101.244 117.457 1.00 41.73 O
ATOM 4 OP2 U B1087 47.751 100.085 115.593 1.00 42.63 O
ATOM 5 O5' U B1087 47.550 102.545 115.997 1.00 42.63 O
ATOM 6 C5' U B1087 48.043 103.842 116.345 1.00 43.15 C
ATOM 7 C4' U B1087 46.967 104.879 116.166 1.00 44.78 C
ATOM 8 O4' U B1087 46.677 105.041 114.749 1.00 46.23 O
ATOM 9 C3' U B1087 45.631 104.582 116.842 1.00 45.19 C
ATOM 10 O3' U B1087 45.079 105.802 117.301 1.00 47.57 O
ATOM 11 C2' U B1087 44.785 104.054 115.689 1.00 45.01 C
ATOM 12 O2' U B1087 43.401 104.241 115.888 1.00 45.47 O
ATOM 13 C1' U B1087 45.284 104.932 114.546 1.00 44.31 C
ATOM 14 N1 U B1087 45.033 104.440 113.184 1.00 43.08 N
ATOM 15 C2 U B1087 44.446 105.325 112.290 1.00 42.52 C
ATOM 16 O2 U B1087 44.142 106.469 112.591 1.00 44.43 O
ATOM 17 N3 U B1087 44.226 104.824 111.032 1.00 40.76 N
ATOM 18 C4 U B1087 44.520 103.555 110.581 1.00 42.15 C
ATOM 19 O4 U B1087 44.252 103.253 109.418 1.00 39.57 O
ATOM 20 C5 U B1087 45.127 102.695 111.559 1.00 43.12 C
ATOM 21 C6 U B1087 45.358 103.158 112.797 1.00 43.73 C
ATOM 22 P C B1088 45.058 106.120 118.870 1.00 51.73 P
ATOM 23 OP1 C B1088 44.465 107.478 119.041 1.00 51.39 O
ATOM 24 OP2 C B1088 46.415 105.838 119.412 1.00 51.27 O
ATOM 25 O5' C B1088 44.054 105.029 119.463 1.00 52.42 O
TER
Atoms:
C2: (43.055,99.743,119.676)
OP1: (44.465,107.478,119.041)
OP2: (46.415,105.838,119.412)
C4: (44.793,99.619,118.135)
O5': (44.054,105.029,119.463)
C3': (42.913,103.454,121.645)
C1': (41.925,101.901,120.158)
O4': (41.830,103.197,119.586)
C5': (42.760,105.398,119.979)
P: (45.058,106.120,118.870)
O2: (42.296,99.215,120.504)
C4': (42.092,104.197,120.605)
C2': (42.259,102.079,121.644)
O2': (41.076,102.046,122.416)
N1: (42.937,101.121,119.414)
N3: (43.992,99.025,119.021)
N4: (45.719,98.867,117.535)
C6: (43.753,101.716,118.490)
C5: (44.684,101.009,117.832)
O3': (42.818,104.065,122.923)
OP1: (44.465,107.478,119.041)
OP2: (46.415,105.838,119.412)
C4: (44.793,99.619,118.135)
O5': (44.054,105.029,119.463)
C3': (42.913,103.454,121.645)
C1': (41.925,101.901,120.158)
O4': (41.830,103.197,119.586)
C5': (42.760,105.398,119.979)
P: (45.058,106.120,118.870)
O2: (42.296,99.215,120.504)
C4': (42.092,104.197,120.605)
C2': (42.259,102.079,121.644)
O2': (41.076,102.046,122.416)
N1: (42.937,101.121,119.414)
N3: (43.992,99.025,119.021)
N4: (45.719,98.867,117.535)
C6: (43.753,101.716,118.490)
C5: (44.684,101.009,117.832)
O3': (42.818,104.065,122.923)
C4: (44.520,103.555,110.581)
N3: (44.226,104.824,111.032)
OP1: (49.084,101.244,117.457)
OP2: (47.751,100.085,115.593)
C2: (44.446,105.325,112.290)
C1': (45.284,104.932,114.546)
C3': (45.631,104.582,116.842)
O5': (47.550,102.545,115.997)
O4': (46.677,105.041,114.749)
C5': (48.043,103.842,116.345)
P: (48.498,101.271,116.094)
C4': (46.967,104.879,116.166)
C2': (44.785,104.054,115.689)
O2': (43.401,104.241,115.888)
N1: (45.033,104.440,113.184)
O4: (44.252,103.253,109.418)
O2: (44.142,106.469,112.591)
C6: (45.358,103.158,112.797)
C5: (45.127,102.695,111.559)
O3': (45.079,105.802,117.301)
N3: (44.226,104.824,111.032)
OP1: (49.084,101.244,117.457)
OP2: (47.751,100.085,115.593)
C2: (44.446,105.325,112.290)
C1': (45.284,104.932,114.546)
C3': (45.631,104.582,116.842)
O5': (47.550,102.545,115.997)
O4': (46.677,105.041,114.749)
C5': (48.043,103.842,116.345)
P: (48.498,101.271,116.094)
C4': (46.967,104.879,116.166)
C2': (44.785,104.054,115.689)
O2': (43.401,104.241,115.888)
N1: (45.033,104.440,113.184)
O4: (44.252,103.253,109.418)
O2: (44.142,106.469,112.591)
C6: (45.358,103.158,112.797)
C5: (45.127,102.695,111.559)
O3': (45.079,105.802,117.301)
Image (generated by PyMOL):