Doublet info:
Details
Nucleotide types:
CU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1ZDK:R10:R9
Extra
PDB:
ATOM 1 O3' U A 9 22.364 104.665 18.522 0.50103.40 O
ATOM 2 P C A 10 21.147 105.594 19.040 0.50102.74 P
ATOM 3 OP1 C A 10 20.008 105.424 18.053 0.50101.94 O
ATOM 4 OP2 C A 10 21.698 106.988 19.318 0.50101.67 O
ATOM 5 O5' C A 10 20.697 104.911 20.417 0.50 97.78 O
ATOM 6 C5' C A 10 19.487 104.111 20.480 0.50 90.53 C
ATOM 7 C4' C A 10 18.689 104.479 21.707 0.50 85.21 C
ATOM 8 O4' C A 10 19.377 103.976 22.883 0.50 81.11 O
ATOM 9 C3' C A 10 18.545 105.984 21.889 0.50 83.05 C
ATOM 10 O3' C A 10 17.302 106.264 22.525 0.50 84.82 O
ATOM 11 C2' C A 10 19.691 106.311 22.839 0.50 80.85 C
ATOM 12 O2' C A 10 19.466 107.466 23.610 0.50 81.79 O
ATOM 13 C1' C A 10 19.765 105.053 23.705 0.50 77.11 C
ATOM 14 N1 C A 10 21.124 104.770 24.167 0.50 71.56 N
ATOM 15 C2 C A 10 21.459 104.998 25.522 0.50 70.10 C
ATOM 16 O2 C A 10 20.588 105.455 26.297 0.50 69.56 O
ATOM 17 N3 C A 10 22.725 104.723 25.945 0.50 68.23 N
ATOM 18 C4 C A 10 23.633 104.254 25.074 0.50 70.01 C
ATOM 19 N4 C A 10 24.872 104.006 25.522 0.50 68.96 N
ATOM 20 C5 C A 10 23.312 104.021 23.695 0.50 70.29 C
ATOM 21 C6 C A 10 22.059 104.287 23.294 0.50 70.27 C
ATOM 22 P A A 11 15.964 106.466 21.632 0.50 86.00 P
ATOM 23 OP1 A A 11 15.978 105.520 20.468 0.50 86.68 O
ATOM 24 OP2 A A 11 15.807 107.943 21.376 0.50 84.61 O
ATOM 25 O5' A A 11 14.798 106.020 22.639 0.50 84.36 O
TER
ATOM 1 O3' A B 8 26.360 101.477 22.247 0.50 95.42 O
ATOM 2 P U B 9 26.736 103.037 22.014 0.50 94.74 P
ATOM 3 OP1 U B 9 27.946 103.066 21.123 0.50 93.99 O
ATOM 4 OP2 U B 9 26.763 103.773 23.328 0.50 92.98 O
ATOM 5 O5' U B 9 25.490 103.597 21.191 0.50 96.15 O
ATOM 6 C5' U B 9 25.667 104.577 20.147 0.50 99.65 C
ATOM 7 C4' U B 9 24.706 104.298 19.015 0.50102.84 C
ATOM 8 O4' U B 9 25.107 103.085 18.300 0.50104.87 O
ATOM 9 C3' U B 9 23.257 104.079 19.465 0.50103.88 C
ATOM 10 O3' U B 9 22.364 104.665 18.522 0.50103.40 O
ATOM 11 C2' U B 9 23.108 102.562 19.417 0.50105.19 C
ATOM 12 O2' U B 9 21.781 102.132 19.197 0.50105.74 O
ATOM 13 C1' U B 9 24.003 102.207 18.231 0.50106.90 C
ATOM 14 N1 U B 9 24.470 100.813 18.222 0.50109.91 N
ATOM 15 C2 U B 9 24.514 100.164 16.992 0.50111.63 C
ATOM 16 O2 U B 9 24.273 100.730 15.932 0.50112.58 O
ATOM 17 N3 U B 9 24.855 98.831 17.048 0.50112.66 N
ATOM 18 C4 U B 9 25.154 98.093 18.180 0.50112.79 C
ATOM 19 O4 U B 9 25.286 96.864 18.083 0.50113.89 O
ATOM 20 C5 U B 9 25.144 98.850 19.407 0.50112.22 C
ATOM 21 C6 U B 9 24.814 100.153 19.382 0.50111.07 C
ATOM 22 P C B 10 21.147 105.594 19.040 0.50102.74 P
ATOM 23 OP1 C B 10 20.008 105.424 18.053 0.50101.94 O
ATOM 24 OP2 C B 10 21.698 106.988 19.318 0.50101.67 O
ATOM 25 O5' C B 10 20.697 104.911 20.417 0.50 97.78 O
TER
ATOM 2 P C A 10 21.147 105.594 19.040 0.50102.74 P
ATOM 3 OP1 C A 10 20.008 105.424 18.053 0.50101.94 O
ATOM 4 OP2 C A 10 21.698 106.988 19.318 0.50101.67 O
ATOM 5 O5' C A 10 20.697 104.911 20.417 0.50 97.78 O
ATOM 6 C5' C A 10 19.487 104.111 20.480 0.50 90.53 C
ATOM 7 C4' C A 10 18.689 104.479 21.707 0.50 85.21 C
ATOM 8 O4' C A 10 19.377 103.976 22.883 0.50 81.11 O
ATOM 9 C3' C A 10 18.545 105.984 21.889 0.50 83.05 C
ATOM 10 O3' C A 10 17.302 106.264 22.525 0.50 84.82 O
ATOM 11 C2' C A 10 19.691 106.311 22.839 0.50 80.85 C
ATOM 12 O2' C A 10 19.466 107.466 23.610 0.50 81.79 O
ATOM 13 C1' C A 10 19.765 105.053 23.705 0.50 77.11 C
ATOM 14 N1 C A 10 21.124 104.770 24.167 0.50 71.56 N
ATOM 15 C2 C A 10 21.459 104.998 25.522 0.50 70.10 C
ATOM 16 O2 C A 10 20.588 105.455 26.297 0.50 69.56 O
ATOM 17 N3 C A 10 22.725 104.723 25.945 0.50 68.23 N
ATOM 18 C4 C A 10 23.633 104.254 25.074 0.50 70.01 C
ATOM 19 N4 C A 10 24.872 104.006 25.522 0.50 68.96 N
ATOM 20 C5 C A 10 23.312 104.021 23.695 0.50 70.29 C
ATOM 21 C6 C A 10 22.059 104.287 23.294 0.50 70.27 C
ATOM 22 P A A 11 15.964 106.466 21.632 0.50 86.00 P
ATOM 23 OP1 A A 11 15.978 105.520 20.468 0.50 86.68 O
ATOM 24 OP2 A A 11 15.807 107.943 21.376 0.50 84.61 O
ATOM 25 O5' A A 11 14.798 106.020 22.639 0.50 84.36 O
TER
ATOM 1 O3' A B 8 26.360 101.477 22.247 0.50 95.42 O
ATOM 2 P U B 9 26.736 103.037 22.014 0.50 94.74 P
ATOM 3 OP1 U B 9 27.946 103.066 21.123 0.50 93.99 O
ATOM 4 OP2 U B 9 26.763 103.773 23.328 0.50 92.98 O
ATOM 5 O5' U B 9 25.490 103.597 21.191 0.50 96.15 O
ATOM 6 C5' U B 9 25.667 104.577 20.147 0.50 99.65 C
ATOM 7 C4' U B 9 24.706 104.298 19.015 0.50102.84 C
ATOM 8 O4' U B 9 25.107 103.085 18.300 0.50104.87 O
ATOM 9 C3' U B 9 23.257 104.079 19.465 0.50103.88 C
ATOM 10 O3' U B 9 22.364 104.665 18.522 0.50103.40 O
ATOM 11 C2' U B 9 23.108 102.562 19.417 0.50105.19 C
ATOM 12 O2' U B 9 21.781 102.132 19.197 0.50105.74 O
ATOM 13 C1' U B 9 24.003 102.207 18.231 0.50106.90 C
ATOM 14 N1 U B 9 24.470 100.813 18.222 0.50109.91 N
ATOM 15 C2 U B 9 24.514 100.164 16.992 0.50111.63 C
ATOM 16 O2 U B 9 24.273 100.730 15.932 0.50112.58 O
ATOM 17 N3 U B 9 24.855 98.831 17.048 0.50112.66 N
ATOM 18 C4 U B 9 25.154 98.093 18.180 0.50112.79 C
ATOM 19 O4 U B 9 25.286 96.864 18.083 0.50113.89 O
ATOM 20 C5 U B 9 25.144 98.850 19.407 0.50112.22 C
ATOM 21 C6 U B 9 24.814 100.153 19.382 0.50111.07 C
ATOM 22 P C B 10 21.147 105.594 19.040 0.50102.74 P
ATOM 23 OP1 C B 10 20.008 105.424 18.053 0.50101.94 O
ATOM 24 OP2 C B 10 21.698 106.988 19.318 0.50101.67 O
ATOM 25 O5' C B 10 20.697 104.911 20.417 0.50 97.78 O
TER
Atoms:
C2: (21.459,104.998,25.522)
OP1: (20.008,105.424,18.053)
OP2: (21.698,106.988,19.318)
C4: (23.633,104.254,25.074)
O5': (20.697,104.911,20.417)
C3': (18.545,105.984,21.889)
C1': (19.765,105.053,23.705)
O4': (19.377,103.976,22.883)
C5': (19.487,104.111,20.480)
P: (21.147,105.594,19.040)
O2: (20.588,105.455,26.297)
C4': (18.689,104.479,21.707)
C2': (19.691,106.311,22.839)
O2': (19.466,107.466,23.610)
N1: (21.124,104.770,24.167)
N3: (22.725,104.723,25.945)
N4: (24.872,104.006,25.522)
C6: (22.059,104.287,23.294)
C5: (23.312,104.021,23.695)
O3': (17.302,106.264,22.525)
OP1: (20.008,105.424,18.053)
OP2: (21.698,106.988,19.318)
C4: (23.633,104.254,25.074)
O5': (20.697,104.911,20.417)
C3': (18.545,105.984,21.889)
C1': (19.765,105.053,23.705)
O4': (19.377,103.976,22.883)
C5': (19.487,104.111,20.480)
P: (21.147,105.594,19.040)
O2: (20.588,105.455,26.297)
C4': (18.689,104.479,21.707)
C2': (19.691,106.311,22.839)
O2': (19.466,107.466,23.610)
N1: (21.124,104.770,24.167)
N3: (22.725,104.723,25.945)
N4: (24.872,104.006,25.522)
C6: (22.059,104.287,23.294)
C5: (23.312,104.021,23.695)
O3': (17.302,106.264,22.525)
C4: (25.154,98.093,18.180)
N3: (24.855,98.831,17.048)
OP1: (27.946,103.066,21.123)
OP2: (26.763,103.773,23.328)
C2: (24.514,100.164,16.992)
C1': (24.003,102.207,18.231)
C3': (23.257,104.079,19.465)
O5': (25.490,103.597,21.191)
O4': (25.107,103.085,18.300)
C5': (25.667,104.577,20.147)
P: (26.736,103.037,22.014)
C4': (24.706,104.298,19.015)
C2': (23.108,102.562,19.417)
O2': (21.781,102.132,19.197)
N1: (24.470,100.813,18.222)
O4: (25.286,96.864,18.083)
O2: (24.273,100.730,15.932)
C6: (24.814,100.153,19.382)
C5: (25.144,98.850,19.407)
O3': (22.364,104.665,18.522)
N3: (24.855,98.831,17.048)
OP1: (27.946,103.066,21.123)
OP2: (26.763,103.773,23.328)
C2: (24.514,100.164,16.992)
C1': (24.003,102.207,18.231)
C3': (23.257,104.079,19.465)
O5': (25.490,103.597,21.191)
O4': (25.107,103.085,18.300)
C5': (25.667,104.577,20.147)
P: (26.736,103.037,22.014)
C4': (24.706,104.298,19.015)
C2': (23.108,102.562,19.417)
O2': (21.781,102.132,19.197)
N1: (24.470,100.813,18.222)
O4: (25.286,96.864,18.083)
O2: (24.273,100.730,15.932)
C6: (24.814,100.153,19.382)
C5: (25.144,98.850,19.407)
O3': (22.364,104.665,18.522)
Image (generated by PyMOL):