Doublet info:
Details
Nucleotide types:
CU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2J03:A1238:A1237
Extra
PDB:
ATOM 1 O3' U A1237 -29.325 -75.727 2.142 1.00 2.45 O
ATOM 2 P C A1238 -27.958 -74.901 2.353 1.00 18.90 P
ATOM 3 OP1 C A1238 -28.293 -73.751 3.209 1.00 23.60 O
ATOM 4 OP2 C A1238 -27.311 -74.662 1.049 1.00 23.60 O
ATOM 5 O5' C A1238 -27.005 -75.869 3.176 1.00 8.40 O
ATOM 6 C5' C A1238 -26.821 -75.707 4.601 1.00 8.40 C
ATOM 7 C4' C A1238 -25.493 -76.298 5.035 1.00 8.40 C
ATOM 8 O4' C A1238 -25.529 -77.735 4.889 1.00 8.40 O
ATOM 9 C3' C A1238 -24.317 -75.836 4.197 1.00 8.40 C
ATOM 10 O3' C A1238 -23.743 -74.676 4.763 1.00 8.40 O
ATOM 11 C2' C A1238 -23.349 -76.997 4.269 1.00 8.40 C
ATOM 12 O2' C A1238 -22.558 -76.917 5.422 1.00 8.40 O
ATOM 13 C1' C A1238 -24.296 -78.195 4.362 1.00 8.40 C
ATOM 14 N1 C A1238 -24.558 -78.851 3.061 1.00 32.96 N
ATOM 15 C2 C A1238 -23.503 -79.458 2.379 1.00 32.96 C
ATOM 16 O2 C A1238 -22.368 -79.477 2.896 1.00 32.96 O
ATOM 17 N3 C A1238 -23.743 -80.016 1.176 1.00 32.96 N
ATOM 18 C4 C A1238 -24.971 -79.992 0.660 1.00 32.96 C
ATOM 19 N4 C A1238 -25.156 -80.528 -0.537 1.00 32.96 N
ATOM 20 C5 C A1238 -26.059 -79.412 1.340 1.00 32.96 C
ATOM 21 C6 C A1238 -25.814 -78.857 2.523 1.00 32.96 C
ATOM 22 P C A1239 -22.950 -73.654 3.823 1.00 34.81 P
ATOM 23 OP1 C A1239 -22.720 -72.412 4.589 1.00 28.02 O
ATOM 24 OP2 C A1239 -23.696 -73.593 2.540 1.00 28.02 O
ATOM 25 O5' C A1239 -21.538 -74.360 3.627 1.00 20.29 O
TER
ATOM 1 O3' A B1236 -28.851 -79.107 -3.485 1.00 25.16 O
ATOM 2 P U B1237 -28.031 -79.569 -2.179 1.00 14.67 P
ATOM 3 OP1 U B1237 -26.627 -79.112 -2.382 1.00 35.76 O
ATOM 4 OP2 U B1237 -28.322 -81.004 -1.933 1.00 35.76 O
ATOM 5 O5' U B1237 -28.666 -78.700 -1.010 1.00 2.45 O
ATOM 6 C5' U B1237 -28.523 -77.268 -1.052 1.00 2.45 C
ATOM 7 C4' U B1237 -29.476 -76.595 -0.104 1.00 2.45 C
ATOM 8 O4' U B1237 -30.839 -76.922 -0.472 1.00 2.45 O
ATOM 9 C3' U B1237 -29.311 -76.923 1.375 1.00 2.45 C
ATOM 10 O3' U B1237 -29.325 -75.727 2.142 1.00 2.45 O
ATOM 11 C2' U B1237 -30.527 -77.797 1.677 1.00 2.45 C
ATOM 12 O2' U B1237 -31.019 -77.589 2.980 1.00 2.45 O
ATOM 13 C1' U B1237 -31.556 -77.273 0.686 1.00 2.45 C
ATOM 14 N1 U B1237 -32.606 -78.241 0.340 1.00 39.06 N
ATOM 15 C2 U B1237 -33.860 -78.045 0.885 1.00 39.06 C
ATOM 16 O2 U B1237 -34.134 -77.107 1.607 1.00 39.06 O
ATOM 17 N3 U B1237 -34.787 -78.989 0.559 1.00 39.06 N
ATOM 18 C4 U B1237 -34.601 -80.082 -0.237 1.00 39.06 C
ATOM 19 O4 U B1237 -35.534 -80.868 -0.409 1.00 39.06 O
ATOM 20 C5 U B1237 -33.288 -80.207 -0.779 1.00 39.06 C
ATOM 21 C6 U B1237 -32.359 -79.302 -0.479 1.00 39.06 C
ATOM 22 P C B1238 -27.958 -74.901 2.353 1.00 18.90 P
ATOM 23 OP1 C B1238 -28.293 -73.751 3.209 1.00 23.60 O
ATOM 24 OP2 C B1238 -27.311 -74.662 1.049 1.00 23.60 O
ATOM 25 O5' C B1238 -27.005 -75.869 3.176 1.00 8.40 O
TER
ATOM 2 P C A1238 -27.958 -74.901 2.353 1.00 18.90 P
ATOM 3 OP1 C A1238 -28.293 -73.751 3.209 1.00 23.60 O
ATOM 4 OP2 C A1238 -27.311 -74.662 1.049 1.00 23.60 O
ATOM 5 O5' C A1238 -27.005 -75.869 3.176 1.00 8.40 O
ATOM 6 C5' C A1238 -26.821 -75.707 4.601 1.00 8.40 C
ATOM 7 C4' C A1238 -25.493 -76.298 5.035 1.00 8.40 C
ATOM 8 O4' C A1238 -25.529 -77.735 4.889 1.00 8.40 O
ATOM 9 C3' C A1238 -24.317 -75.836 4.197 1.00 8.40 C
ATOM 10 O3' C A1238 -23.743 -74.676 4.763 1.00 8.40 O
ATOM 11 C2' C A1238 -23.349 -76.997 4.269 1.00 8.40 C
ATOM 12 O2' C A1238 -22.558 -76.917 5.422 1.00 8.40 O
ATOM 13 C1' C A1238 -24.296 -78.195 4.362 1.00 8.40 C
ATOM 14 N1 C A1238 -24.558 -78.851 3.061 1.00 32.96 N
ATOM 15 C2 C A1238 -23.503 -79.458 2.379 1.00 32.96 C
ATOM 16 O2 C A1238 -22.368 -79.477 2.896 1.00 32.96 O
ATOM 17 N3 C A1238 -23.743 -80.016 1.176 1.00 32.96 N
ATOM 18 C4 C A1238 -24.971 -79.992 0.660 1.00 32.96 C
ATOM 19 N4 C A1238 -25.156 -80.528 -0.537 1.00 32.96 N
ATOM 20 C5 C A1238 -26.059 -79.412 1.340 1.00 32.96 C
ATOM 21 C6 C A1238 -25.814 -78.857 2.523 1.00 32.96 C
ATOM 22 P C A1239 -22.950 -73.654 3.823 1.00 34.81 P
ATOM 23 OP1 C A1239 -22.720 -72.412 4.589 1.00 28.02 O
ATOM 24 OP2 C A1239 -23.696 -73.593 2.540 1.00 28.02 O
ATOM 25 O5' C A1239 -21.538 -74.360 3.627 1.00 20.29 O
TER
ATOM 1 O3' A B1236 -28.851 -79.107 -3.485 1.00 25.16 O
ATOM 2 P U B1237 -28.031 -79.569 -2.179 1.00 14.67 P
ATOM 3 OP1 U B1237 -26.627 -79.112 -2.382 1.00 35.76 O
ATOM 4 OP2 U B1237 -28.322 -81.004 -1.933 1.00 35.76 O
ATOM 5 O5' U B1237 -28.666 -78.700 -1.010 1.00 2.45 O
ATOM 6 C5' U B1237 -28.523 -77.268 -1.052 1.00 2.45 C
ATOM 7 C4' U B1237 -29.476 -76.595 -0.104 1.00 2.45 C
ATOM 8 O4' U B1237 -30.839 -76.922 -0.472 1.00 2.45 O
ATOM 9 C3' U B1237 -29.311 -76.923 1.375 1.00 2.45 C
ATOM 10 O3' U B1237 -29.325 -75.727 2.142 1.00 2.45 O
ATOM 11 C2' U B1237 -30.527 -77.797 1.677 1.00 2.45 C
ATOM 12 O2' U B1237 -31.019 -77.589 2.980 1.00 2.45 O
ATOM 13 C1' U B1237 -31.556 -77.273 0.686 1.00 2.45 C
ATOM 14 N1 U B1237 -32.606 -78.241 0.340 1.00 39.06 N
ATOM 15 C2 U B1237 -33.860 -78.045 0.885 1.00 39.06 C
ATOM 16 O2 U B1237 -34.134 -77.107 1.607 1.00 39.06 O
ATOM 17 N3 U B1237 -34.787 -78.989 0.559 1.00 39.06 N
ATOM 18 C4 U B1237 -34.601 -80.082 -0.237 1.00 39.06 C
ATOM 19 O4 U B1237 -35.534 -80.868 -0.409 1.00 39.06 O
ATOM 20 C5 U B1237 -33.288 -80.207 -0.779 1.00 39.06 C
ATOM 21 C6 U B1237 -32.359 -79.302 -0.479 1.00 39.06 C
ATOM 22 P C B1238 -27.958 -74.901 2.353 1.00 18.90 P
ATOM 23 OP1 C B1238 -28.293 -73.751 3.209 1.00 23.60 O
ATOM 24 OP2 C B1238 -27.311 -74.662 1.049 1.00 23.60 O
ATOM 25 O5' C B1238 -27.005 -75.869 3.176 1.00 8.40 O
TER
Atoms:
C2: (-23.503,-79.458,2.379)
OP1: (-28.293,-73.751,3.209)
OP2: (-27.311,-74.662,1.049)
C4: (-24.971,-79.992,0.660)
O5': (-27.005,-75.869,3.176)
C3': (-24.317,-75.836,4.197)
C1': (-24.296,-78.195,4.362)
O4': (-25.529,-77.735,4.889)
C5': (-26.821,-75.707,4.601)
P: (-27.958,-74.901,2.353)
O2: (-22.368,-79.477,2.896)
C4': (-25.493,-76.298,5.035)
C2': (-23.349,-76.997,4.269)
O2': (-22.558,-76.917,5.422)
N1: (-24.558,-78.851,3.061)
N3: (-23.743,-80.016,1.176)
N4: (-25.156,-80.528,-0.537)
C6: (-25.814,-78.857,2.523)
C5: (-26.059,-79.412,1.340)
O3': (-23.743,-74.676,4.763)
OP1: (-28.293,-73.751,3.209)
OP2: (-27.311,-74.662,1.049)
C4: (-24.971,-79.992,0.660)
O5': (-27.005,-75.869,3.176)
C3': (-24.317,-75.836,4.197)
C1': (-24.296,-78.195,4.362)
O4': (-25.529,-77.735,4.889)
C5': (-26.821,-75.707,4.601)
P: (-27.958,-74.901,2.353)
O2: (-22.368,-79.477,2.896)
C4': (-25.493,-76.298,5.035)
C2': (-23.349,-76.997,4.269)
O2': (-22.558,-76.917,5.422)
N1: (-24.558,-78.851,3.061)
N3: (-23.743,-80.016,1.176)
N4: (-25.156,-80.528,-0.537)
C6: (-25.814,-78.857,2.523)
C5: (-26.059,-79.412,1.340)
O3': (-23.743,-74.676,4.763)
C4: (-34.601,-80.082,-0.237)
N3: (-34.787,-78.989,0.559)
OP1: (-26.627,-79.112,-2.382)
OP2: (-28.322,-81.004,-1.933)
C2: (-33.860,-78.045,0.885)
C1': (-31.556,-77.273,0.686)
C3': (-29.311,-76.923,1.375)
O5': (-28.666,-78.700,-1.010)
O4': (-30.839,-76.922,-0.472)
C5': (-28.523,-77.268,-1.052)
P: (-28.031,-79.569,-2.179)
C4': (-29.476,-76.595,-0.104)
C2': (-30.527,-77.797,1.677)
O2': (-31.019,-77.589,2.980)
N1: (-32.606,-78.241,0.340)
O4: (-35.534,-80.868,-0.409)
O2: (-34.134,-77.107,1.607)
C6: (-32.359,-79.302,-0.479)
C5: (-33.288,-80.207,-0.779)
O3': (-29.325,-75.727,2.142)
N3: (-34.787,-78.989,0.559)
OP1: (-26.627,-79.112,-2.382)
OP2: (-28.322,-81.004,-1.933)
C2: (-33.860,-78.045,0.885)
C1': (-31.556,-77.273,0.686)
C3': (-29.311,-76.923,1.375)
O5': (-28.666,-78.700,-1.010)
O4': (-30.839,-76.922,-0.472)
C5': (-28.523,-77.268,-1.052)
P: (-28.031,-79.569,-2.179)
C4': (-29.476,-76.595,-0.104)
C2': (-30.527,-77.797,1.677)
O2': (-31.019,-77.589,2.980)
N1: (-32.606,-78.241,0.340)
O4: (-35.534,-80.868,-0.409)
O2: (-34.134,-77.107,1.607)
C6: (-32.359,-79.302,-0.479)
C5: (-33.288,-80.207,-0.779)
O3': (-29.325,-75.727,2.142)
Image (generated by PyMOL):