Doublet info:
Details
Nucleotide types:
CU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1Y26:X41:X12
Extra
PDB:
ATOM 1 O3' C A 40 26.222 -23.986 -3.255 1.00 66.43 O
ATOM 2 P C A 41 26.585 -25.268 -4.164 1.00 70.85 P
ATOM 3 OP1 C A 41 25.396 -26.072 -4.535 1.00 72.84 O
ATOM 4 OP2 C A 41 27.774 -25.924 -3.587 1.00 72.86 O
ATOM 5 O5' C A 41 27.065 -24.457 -5.476 1.00 71.14 O
ATOM 6 C5' C A 41 26.275 -24.177 -6.591 1.00 65.02 C
ATOM 7 C4' C A 41 26.212 -22.706 -7.020 1.00 64.61 C
ATOM 8 O4' C A 41 25.961 -21.804 -5.906 1.00 63.20 O
ATOM 9 C3' C A 41 27.372 -22.005 -7.745 1.00 62.70 C
ATOM 10 O3' C A 41 27.624 -22.522 -9.047 1.00 60.75 O
ATOM 11 C2' C A 41 26.784 -20.599 -7.783 1.00 58.20 C
ATOM 12 O2' C A 41 25.819 -20.413 -8.798 1.00 62.21 O
ATOM 13 C1' C A 41 26.109 -20.481 -6.415 1.00 59.19 C
ATOM 14 N1 C A 41 27.005 -19.723 -5.465 1.00 58.80 N
ATOM 15 C2 C A 41 27.276 -18.350 -5.650 1.00 58.12 C
ATOM 16 O2 C A 41 26.759 -17.713 -6.590 1.00 56.20 O
ATOM 17 N3 C A 41 28.116 -17.745 -4.767 1.00 56.26 N
ATOM 18 C4 C A 41 28.690 -18.408 -3.779 1.00 54.25 C
ATOM 19 N4 C A 41 29.502 -17.729 -2.950 1.00 55.19 N
ATOM 20 C5 C A 41 28.448 -19.799 -3.608 1.00 56.50 C
ATOM 21 C6 C A 41 27.634 -20.414 -4.472 1.00 53.48 C
ATOM 22 P A A 42 29.057 -22.404 -9.759 1.00 63.69 P
ATOM 23 OP1 A A 42 29.022 -23.131 -11.061 1.00 65.67 O
ATOM 24 OP2 A A 42 30.095 -22.693 -8.760 1.00 58.61 O
ATOM 25 O5' A A 42 29.186 -20.875 -10.226 1.00 58.59 O
TER
ATOM 1 O3' A B 11 28.368 -20.002 0.482 1.00 51.73 O
ATOM 2 P U B 12 29.837 -20.408 0.006 1.00 56.25 P
ATOM 3 OP1 U B 12 30.526 -19.266 -0.607 1.00 53.42 O
ATOM 4 OP2 U B 12 29.707 -21.627 -0.822 1.00 57.37 O
ATOM 5 O5' U B 12 30.558 -20.818 1.361 1.00 53.38 O
ATOM 6 C5' U B 12 30.962 -19.843 2.330 1.00 54.96 C
ATOM 7 C4' U B 12 30.940 -20.420 3.742 1.00 52.89 C
ATOM 8 O4' U B 12 29.543 -20.536 4.174 1.00 55.43 O
ATOM 9 C3' U B 12 31.480 -21.826 3.902 1.00 51.23 C
ATOM 10 O3' U B 12 32.923 -21.887 3.969 1.00 48.52 O
ATOM 11 C2' U B 12 30.807 -22.197 5.237 1.00 52.36 C
ATOM 12 O2' U B 12 31.385 -21.592 6.388 1.00 52.28 O
ATOM 13 C1' U B 12 29.390 -21.662 5.005 1.00 53.79 C
ATOM 14 N1 U B 12 28.426 -22.638 4.375 1.00 52.45 N
ATOM 15 C2 U B 12 27.936 -23.713 5.115 1.00 53.15 C
ATOM 16 O2 U B 12 28.244 -23.967 6.273 1.00 51.32 O
ATOM 17 N3 U B 12 27.085 -24.516 4.431 1.00 51.38 N
ATOM 18 C4 U B 12 26.670 -24.379 3.130 1.00 54.47 C
ATOM 19 O4 U B 12 25.882 -25.184 2.683 1.00 55.29 O
ATOM 20 C5 U B 12 27.179 -23.243 2.411 1.00 55.54 C
ATOM 21 C6 U B 12 28.016 -22.428 3.064 1.00 56.77 C
ATOM 22 P C B 13 33.669 -23.206 3.376 1.00 53.20 P
ATOM 23 OP1 C B 13 35.106 -22.966 3.555 1.00 52.17 O
ATOM 24 OP2 C B 13 33.105 -23.654 2.111 1.00 50.53 O
ATOM 25 O5' C B 13 33.350 -24.342 4.471 1.00 49.70 O
TER
ATOM 2 P C A 41 26.585 -25.268 -4.164 1.00 70.85 P
ATOM 3 OP1 C A 41 25.396 -26.072 -4.535 1.00 72.84 O
ATOM 4 OP2 C A 41 27.774 -25.924 -3.587 1.00 72.86 O
ATOM 5 O5' C A 41 27.065 -24.457 -5.476 1.00 71.14 O
ATOM 6 C5' C A 41 26.275 -24.177 -6.591 1.00 65.02 C
ATOM 7 C4' C A 41 26.212 -22.706 -7.020 1.00 64.61 C
ATOM 8 O4' C A 41 25.961 -21.804 -5.906 1.00 63.20 O
ATOM 9 C3' C A 41 27.372 -22.005 -7.745 1.00 62.70 C
ATOM 10 O3' C A 41 27.624 -22.522 -9.047 1.00 60.75 O
ATOM 11 C2' C A 41 26.784 -20.599 -7.783 1.00 58.20 C
ATOM 12 O2' C A 41 25.819 -20.413 -8.798 1.00 62.21 O
ATOM 13 C1' C A 41 26.109 -20.481 -6.415 1.00 59.19 C
ATOM 14 N1 C A 41 27.005 -19.723 -5.465 1.00 58.80 N
ATOM 15 C2 C A 41 27.276 -18.350 -5.650 1.00 58.12 C
ATOM 16 O2 C A 41 26.759 -17.713 -6.590 1.00 56.20 O
ATOM 17 N3 C A 41 28.116 -17.745 -4.767 1.00 56.26 N
ATOM 18 C4 C A 41 28.690 -18.408 -3.779 1.00 54.25 C
ATOM 19 N4 C A 41 29.502 -17.729 -2.950 1.00 55.19 N
ATOM 20 C5 C A 41 28.448 -19.799 -3.608 1.00 56.50 C
ATOM 21 C6 C A 41 27.634 -20.414 -4.472 1.00 53.48 C
ATOM 22 P A A 42 29.057 -22.404 -9.759 1.00 63.69 P
ATOM 23 OP1 A A 42 29.022 -23.131 -11.061 1.00 65.67 O
ATOM 24 OP2 A A 42 30.095 -22.693 -8.760 1.00 58.61 O
ATOM 25 O5' A A 42 29.186 -20.875 -10.226 1.00 58.59 O
TER
ATOM 1 O3' A B 11 28.368 -20.002 0.482 1.00 51.73 O
ATOM 2 P U B 12 29.837 -20.408 0.006 1.00 56.25 P
ATOM 3 OP1 U B 12 30.526 -19.266 -0.607 1.00 53.42 O
ATOM 4 OP2 U B 12 29.707 -21.627 -0.822 1.00 57.37 O
ATOM 5 O5' U B 12 30.558 -20.818 1.361 1.00 53.38 O
ATOM 6 C5' U B 12 30.962 -19.843 2.330 1.00 54.96 C
ATOM 7 C4' U B 12 30.940 -20.420 3.742 1.00 52.89 C
ATOM 8 O4' U B 12 29.543 -20.536 4.174 1.00 55.43 O
ATOM 9 C3' U B 12 31.480 -21.826 3.902 1.00 51.23 C
ATOM 10 O3' U B 12 32.923 -21.887 3.969 1.00 48.52 O
ATOM 11 C2' U B 12 30.807 -22.197 5.237 1.00 52.36 C
ATOM 12 O2' U B 12 31.385 -21.592 6.388 1.00 52.28 O
ATOM 13 C1' U B 12 29.390 -21.662 5.005 1.00 53.79 C
ATOM 14 N1 U B 12 28.426 -22.638 4.375 1.00 52.45 N
ATOM 15 C2 U B 12 27.936 -23.713 5.115 1.00 53.15 C
ATOM 16 O2 U B 12 28.244 -23.967 6.273 1.00 51.32 O
ATOM 17 N3 U B 12 27.085 -24.516 4.431 1.00 51.38 N
ATOM 18 C4 U B 12 26.670 -24.379 3.130 1.00 54.47 C
ATOM 19 O4 U B 12 25.882 -25.184 2.683 1.00 55.29 O
ATOM 20 C5 U B 12 27.179 -23.243 2.411 1.00 55.54 C
ATOM 21 C6 U B 12 28.016 -22.428 3.064 1.00 56.77 C
ATOM 22 P C B 13 33.669 -23.206 3.376 1.00 53.20 P
ATOM 23 OP1 C B 13 35.106 -22.966 3.555 1.00 52.17 O
ATOM 24 OP2 C B 13 33.105 -23.654 2.111 1.00 50.53 O
ATOM 25 O5' C B 13 33.350 -24.342 4.471 1.00 49.70 O
TER
Atoms:
C2: (27.276,-18.350,-5.650)
OP1: (25.396,-26.072,-4.535)
OP2: (27.774,-25.924,-3.587)
C4: (28.690,-18.408,-3.779)
O5': (27.065,-24.457,-5.476)
C3': (27.372,-22.005,-7.745)
C1': (26.109,-20.481,-6.415)
O4': (25.961,-21.804,-5.906)
C5': (26.275,-24.177,-6.591)
P: (26.585,-25.268,-4.164)
O2: (26.759,-17.713,-6.590)
C4': (26.212,-22.706,-7.020)
C2': (26.784,-20.599,-7.783)
O2': (25.819,-20.413,-8.798)
N1: (27.005,-19.723,-5.465)
N3: (28.116,-17.745,-4.767)
N4: (29.502,-17.729,-2.950)
C6: (27.634,-20.414,-4.472)
C5: (28.448,-19.799,-3.608)
O3': (27.624,-22.522,-9.047)
OP1: (25.396,-26.072,-4.535)
OP2: (27.774,-25.924,-3.587)
C4: (28.690,-18.408,-3.779)
O5': (27.065,-24.457,-5.476)
C3': (27.372,-22.005,-7.745)
C1': (26.109,-20.481,-6.415)
O4': (25.961,-21.804,-5.906)
C5': (26.275,-24.177,-6.591)
P: (26.585,-25.268,-4.164)
O2: (26.759,-17.713,-6.590)
C4': (26.212,-22.706,-7.020)
C2': (26.784,-20.599,-7.783)
O2': (25.819,-20.413,-8.798)
N1: (27.005,-19.723,-5.465)
N3: (28.116,-17.745,-4.767)
N4: (29.502,-17.729,-2.950)
C6: (27.634,-20.414,-4.472)
C5: (28.448,-19.799,-3.608)
O3': (27.624,-22.522,-9.047)
C4: (26.670,-24.379,3.130)
N3: (27.085,-24.516,4.431)
OP1: (30.526,-19.266,-0.607)
OP2: (29.707,-21.627,-0.822)
C2: (27.936,-23.713,5.115)
C1': (29.390,-21.662,5.005)
C3': (31.480,-21.826,3.902)
O5': (30.558,-20.818,1.361)
O4': (29.543,-20.536,4.174)
C5': (30.962,-19.843,2.330)
P: (29.837,-20.408,0.006)
C4': (30.940,-20.420,3.742)
C2': (30.807,-22.197,5.237)
O2': (31.385,-21.592,6.388)
N1: (28.426,-22.638,4.375)
O4: (25.882,-25.184,2.683)
O2: (28.244,-23.967,6.273)
C6: (28.016,-22.428,3.064)
C5: (27.179,-23.243,2.411)
O3': (32.923,-21.887,3.969)
N3: (27.085,-24.516,4.431)
OP1: (30.526,-19.266,-0.607)
OP2: (29.707,-21.627,-0.822)
C2: (27.936,-23.713,5.115)
C1': (29.390,-21.662,5.005)
C3': (31.480,-21.826,3.902)
O5': (30.558,-20.818,1.361)
O4': (29.543,-20.536,4.174)
C5': (30.962,-19.843,2.330)
P: (29.837,-20.408,0.006)
C4': (30.940,-20.420,3.742)
C2': (30.807,-22.197,5.237)
O2': (31.385,-21.592,6.388)
N1: (28.426,-22.638,4.375)
O4: (25.882,-25.184,2.683)
O2: (28.244,-23.967,6.273)
C6: (28.016,-22.428,3.064)
C5: (27.179,-23.243,2.411)
O3': (32.923,-21.887,3.969)
Image (generated by PyMOL):