Doublet info:
Details
Nucleotide types:
CU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIT:02023:02022
Extra
PDB:
ATOM 1 O3' U A2022 35.361 121.674 104.092 1.00 34.37 O
ATOM 2 P C A2023 34.491 120.727 105.042 1.00 34.46 P
ATOM 3 OP1 C A2023 33.132 120.661 104.451 1.00 32.65 O
ATOM 4 OP2 C A2023 34.662 121.201 106.441 1.00 33.47 O
ATOM 5 O5' C A2023 35.212 119.315 104.917 1.00 32.61 O
ATOM 6 C5' C A2023 34.755 118.323 103.986 1.00 32.90 C
ATOM 7 C4' C A2023 35.092 116.945 104.498 1.00 31.74 C
ATOM 8 O4' C A2023 36.524 116.745 104.460 1.00 30.90 O
ATOM 9 C3' C A2023 34.684 116.715 105.938 1.00 31.93 C
ATOM 10 O3' C A2023 33.351 116.224 105.952 1.00 33.91 O
ATOM 11 C2' C A2023 35.695 115.683 106.415 1.00 31.41 C
ATOM 12 O2' C A2023 35.332 114.378 106.024 1.00 30.30 O
ATOM 13 C1' C A2023 36.948 116.099 105.638 1.00 30.91 C
ATOM 14 N1 C A2023 37.886 117.005 106.324 1.00 31.73 N
ATOM 15 C2 C A2023 38.722 116.498 107.316 1.00 30.89 C
ATOM 16 O2 C A2023 38.618 115.310 107.641 1.00 30.56 O
ATOM 17 N3 C A2023 39.622 117.318 107.900 1.00 31.64 N
ATOM 18 C4 C A2023 39.696 118.599 107.535 1.00 31.45 C
ATOM 19 N4 C A2023 40.608 119.371 108.129 1.00 32.02 N
ATOM 20 C5 C A2023 38.840 119.147 106.545 1.00 31.93 C
ATOM 21 C6 C A2023 37.958 118.326 105.974 1.00 31.71 C
ATOM 22 P U A2024 32.321 116.718 107.077 1.00 35.99 P
ATOM 23 OP1 U A2024 31.037 116.053 106.718 1.00 35.02 O
ATOM 24 OP2 U A2024 32.375 118.199 107.210 1.00 33.98 O
ATOM 25 O5' U A2024 32.880 116.069 108.418 1.00 33.28 O
TER
ATOM 1 O3' G B2021 40.511 124.410 107.242 1.00 31.01 O
ATOM 2 P U B2022 40.288 122.913 106.722 1.00 33.03 P
ATOM 3 OP1 U B2022 39.825 122.166 107.911 1.00 34.05 O
ATOM 4 OP2 U B2022 41.491 122.453 105.982 1.00 32.83 O
ATOM 5 O5' U B2022 39.095 123.015 105.674 1.00 31.71 O
ATOM 6 C5' U B2022 37.830 123.556 106.053 1.00 31.55 C
ATOM 7 C4' U B2022 36.833 123.357 104.946 1.00 32.61 C
ATOM 8 O4' U B2022 37.204 124.177 103.803 1.00 33.50 O
ATOM 9 C3' U B2022 36.711 121.931 104.424 1.00 34.05 C
ATOM 10 O3' U B2022 35.361 121.674 104.092 1.00 34.37 O
ATOM 11 C2' U B2022 37.564 121.953 103.160 1.00 35.17 C
ATOM 12 O2' U B2022 37.187 120.987 102.192 1.00 36.54 O
ATOM 13 C1' U B2022 37.307 123.367 102.651 1.00 32.41 C
ATOM 14 N1 U B2022 38.409 123.869 101.824 1.00 30.52 N
ATOM 15 C2 U B2022 38.144 124.176 100.501 1.00 29.70 C
ATOM 16 O2 U B2022 37.040 124.097 100.008 1.00 27.28 O
ATOM 17 N3 U B2022 39.233 124.587 99.777 1.00 31.35 N
ATOM 18 C4 U B2022 40.527 124.723 100.233 1.00 32.54 C
ATOM 19 O4 U B2022 41.419 124.999 99.438 1.00 35.97 O
ATOM 20 C5 U B2022 40.709 124.419 101.615 1.00 32.70 C
ATOM 21 C6 U B2022 39.672 124.013 102.344 1.00 31.38 C
ATOM 22 P C B2023 34.491 120.727 105.042 1.00 34.46 P
ATOM 23 OP1 C B2023 33.132 120.661 104.451 1.00 32.65 O
ATOM 24 OP2 C B2023 34.662 121.201 106.441 1.00 33.47 O
ATOM 25 O5' C B2023 35.212 119.315 104.917 1.00 32.61 O
TER
ATOM 2 P C A2023 34.491 120.727 105.042 1.00 34.46 P
ATOM 3 OP1 C A2023 33.132 120.661 104.451 1.00 32.65 O
ATOM 4 OP2 C A2023 34.662 121.201 106.441 1.00 33.47 O
ATOM 5 O5' C A2023 35.212 119.315 104.917 1.00 32.61 O
ATOM 6 C5' C A2023 34.755 118.323 103.986 1.00 32.90 C
ATOM 7 C4' C A2023 35.092 116.945 104.498 1.00 31.74 C
ATOM 8 O4' C A2023 36.524 116.745 104.460 1.00 30.90 O
ATOM 9 C3' C A2023 34.684 116.715 105.938 1.00 31.93 C
ATOM 10 O3' C A2023 33.351 116.224 105.952 1.00 33.91 O
ATOM 11 C2' C A2023 35.695 115.683 106.415 1.00 31.41 C
ATOM 12 O2' C A2023 35.332 114.378 106.024 1.00 30.30 O
ATOM 13 C1' C A2023 36.948 116.099 105.638 1.00 30.91 C
ATOM 14 N1 C A2023 37.886 117.005 106.324 1.00 31.73 N
ATOM 15 C2 C A2023 38.722 116.498 107.316 1.00 30.89 C
ATOM 16 O2 C A2023 38.618 115.310 107.641 1.00 30.56 O
ATOM 17 N3 C A2023 39.622 117.318 107.900 1.00 31.64 N
ATOM 18 C4 C A2023 39.696 118.599 107.535 1.00 31.45 C
ATOM 19 N4 C A2023 40.608 119.371 108.129 1.00 32.02 N
ATOM 20 C5 C A2023 38.840 119.147 106.545 1.00 31.93 C
ATOM 21 C6 C A2023 37.958 118.326 105.974 1.00 31.71 C
ATOM 22 P U A2024 32.321 116.718 107.077 1.00 35.99 P
ATOM 23 OP1 U A2024 31.037 116.053 106.718 1.00 35.02 O
ATOM 24 OP2 U A2024 32.375 118.199 107.210 1.00 33.98 O
ATOM 25 O5' U A2024 32.880 116.069 108.418 1.00 33.28 O
TER
ATOM 1 O3' G B2021 40.511 124.410 107.242 1.00 31.01 O
ATOM 2 P U B2022 40.288 122.913 106.722 1.00 33.03 P
ATOM 3 OP1 U B2022 39.825 122.166 107.911 1.00 34.05 O
ATOM 4 OP2 U B2022 41.491 122.453 105.982 1.00 32.83 O
ATOM 5 O5' U B2022 39.095 123.015 105.674 1.00 31.71 O
ATOM 6 C5' U B2022 37.830 123.556 106.053 1.00 31.55 C
ATOM 7 C4' U B2022 36.833 123.357 104.946 1.00 32.61 C
ATOM 8 O4' U B2022 37.204 124.177 103.803 1.00 33.50 O
ATOM 9 C3' U B2022 36.711 121.931 104.424 1.00 34.05 C
ATOM 10 O3' U B2022 35.361 121.674 104.092 1.00 34.37 O
ATOM 11 C2' U B2022 37.564 121.953 103.160 1.00 35.17 C
ATOM 12 O2' U B2022 37.187 120.987 102.192 1.00 36.54 O
ATOM 13 C1' U B2022 37.307 123.367 102.651 1.00 32.41 C
ATOM 14 N1 U B2022 38.409 123.869 101.824 1.00 30.52 N
ATOM 15 C2 U B2022 38.144 124.176 100.501 1.00 29.70 C
ATOM 16 O2 U B2022 37.040 124.097 100.008 1.00 27.28 O
ATOM 17 N3 U B2022 39.233 124.587 99.777 1.00 31.35 N
ATOM 18 C4 U B2022 40.527 124.723 100.233 1.00 32.54 C
ATOM 19 O4 U B2022 41.419 124.999 99.438 1.00 35.97 O
ATOM 20 C5 U B2022 40.709 124.419 101.615 1.00 32.70 C
ATOM 21 C6 U B2022 39.672 124.013 102.344 1.00 31.38 C
ATOM 22 P C B2023 34.491 120.727 105.042 1.00 34.46 P
ATOM 23 OP1 C B2023 33.132 120.661 104.451 1.00 32.65 O
ATOM 24 OP2 C B2023 34.662 121.201 106.441 1.00 33.47 O
ATOM 25 O5' C B2023 35.212 119.315 104.917 1.00 32.61 O
TER
Atoms:
C2: (38.722,116.498,107.316)
OP1: (33.132,120.661,104.451)
OP2: (34.662,121.201,106.441)
C4: (39.696,118.599,107.535)
O5': (35.212,119.315,104.917)
C3': (34.684,116.715,105.938)
C1': (36.948,116.099,105.638)
O4': (36.524,116.745,104.460)
C5': (34.755,118.323,103.986)
P: (34.491,120.727,105.042)
O2: (38.618,115.310,107.641)
C4': (35.092,116.945,104.498)
C2': (35.695,115.683,106.415)
O2': (35.332,114.378,106.024)
N1: (37.886,117.005,106.324)
N3: (39.622,117.318,107.900)
N4: (40.608,119.371,108.129)
C6: (37.958,118.326,105.974)
C5: (38.840,119.147,106.545)
O3': (33.351,116.224,105.952)
OP1: (33.132,120.661,104.451)
OP2: (34.662,121.201,106.441)
C4: (39.696,118.599,107.535)
O5': (35.212,119.315,104.917)
C3': (34.684,116.715,105.938)
C1': (36.948,116.099,105.638)
O4': (36.524,116.745,104.460)
C5': (34.755,118.323,103.986)
P: (34.491,120.727,105.042)
O2: (38.618,115.310,107.641)
C4': (35.092,116.945,104.498)
C2': (35.695,115.683,106.415)
O2': (35.332,114.378,106.024)
N1: (37.886,117.005,106.324)
N3: (39.622,117.318,107.900)
N4: (40.608,119.371,108.129)
C6: (37.958,118.326,105.974)
C5: (38.840,119.147,106.545)
O3': (33.351,116.224,105.952)
C4: (40.527,124.723,100.233)
N3: (39.233,124.587,99.777)
OP1: (39.825,122.166,107.911)
OP2: (41.491,122.453,105.982)
C2: (38.144,124.176,100.501)
C1': (37.307,123.367,102.651)
C3': (36.711,121.931,104.424)
O5': (39.095,123.015,105.674)
O4': (37.204,124.177,103.803)
C5': (37.830,123.556,106.053)
P: (40.288,122.913,106.722)
C4': (36.833,123.357,104.946)
C2': (37.564,121.953,103.160)
O2': (37.187,120.987,102.192)
N1: (38.409,123.869,101.824)
O4: (41.419,124.999,99.438)
O2: (37.040,124.097,100.008)
C6: (39.672,124.013,102.344)
C5: (40.709,124.419,101.615)
O3': (35.361,121.674,104.092)
N3: (39.233,124.587,99.777)
OP1: (39.825,122.166,107.911)
OP2: (41.491,122.453,105.982)
C2: (38.144,124.176,100.501)
C1': (37.307,123.367,102.651)
C3': (36.711,121.931,104.424)
O5': (39.095,123.015,105.674)
O4': (37.204,124.177,103.803)
C5': (37.830,123.556,106.053)
P: (40.288,122.913,106.722)
C4': (36.833,123.357,104.946)
C2': (37.564,121.953,103.160)
O2': (37.187,120.987,102.192)
N1: (38.409,123.869,101.824)
O4: (41.419,124.999,99.438)
O2: (37.040,124.097,100.008)
C6: (39.672,124.013,102.344)
C5: (40.709,124.419,101.615)
O3': (35.361,121.674,104.092)
Image (generated by PyMOL):