Doublet info:
Details
Nucleotide types:
CU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2DVI:B19:B18
Extra
PDB:
ATOM 1 O3' U A 18 -6.685 2.464 -14.287 1.00 83.64 O
ATOM 2 P C A 19 -6.616 1.340 -13.134 1.00 81.00 P
ATOM 3 OP1 C A 19 -6.256 1.934 -11.821 1.00 82.87 O
ATOM 4 OP2 C A 19 -5.777 0.250 -13.695 1.00 81.43 O
ATOM 5 O5' C A 19 -8.097 0.770 -12.992 1.00 76.81 O
ATOM 6 C5' C A 19 -8.404 -0.158 -11.951 1.00 67.20 C
ATOM 7 C4' C A 19 -9.777 -0.753 -12.150 1.00 61.79 C
ATOM 8 O4' C A 19 -10.785 0.280 -11.996 1.00 59.84 O
ATOM 9 C3' C A 19 -10.059 -1.356 -13.516 1.00 57.73 C
ATOM 10 O3' C A 19 -9.563 -2.688 -13.590 1.00 53.69 O
ATOM 11 C2' C A 19 -11.579 -1.325 -13.557 1.00 57.18 C
ATOM 12 O2' C A 19 -12.150 -2.380 -12.809 1.00 57.93 O
ATOM 13 C1' C A 19 -11.875 0.007 -12.860 1.00 57.09 C
ATOM 14 N1 C A 19 -12.029 1.142 -13.790 1.00 54.33 N
ATOM 15 C2 C A 19 -13.250 1.300 -14.455 1.00 52.81 C
ATOM 16 O2 C A 19 -14.151 0.475 -14.255 1.00 55.06 O
ATOM 17 N3 C A 19 -13.417 2.343 -15.300 1.00 50.64 N
ATOM 18 C4 C A 19 -12.419 3.205 -15.496 1.00 48.58 C
ATOM 19 N4 C A 19 -12.633 4.219 -16.333 1.00 44.97 N
ATOM 20 C5 C A 19 -11.158 3.062 -14.841 1.00 48.64 C
ATOM 21 C6 C A 19 -11.009 2.028 -14.003 1.00 50.64 C
ATOM 22 P C A 20 -9.166 -3.315 -15.015 1.00 52.88 P
ATOM 23 OP1 C A 20 -8.457 -4.595 -14.788 1.00 52.84 O
ATOM 24 OP2 C A 20 -8.508 -2.248 -15.814 1.00 53.09 O
ATOM 25 O5' C A 20 -10.569 -3.633 -15.698 1.00 50.60 O
TER
ATOM 1 O3' U B 17 -8.649 7.102 -17.822 1.00 90.97 O
ATOM 2 P U B 18 -9.446 5.901 -17.107 1.00 89.15 P
ATOM 3 OP1 U B 18 -9.597 4.798 -18.094 1.00 90.08 O
ATOM 4 OP2 U B 18 -10.649 6.475 -16.464 1.00 89.45 O
ATOM 5 O5' U B 18 -8.450 5.405 -15.971 1.00 88.13 O
ATOM 6 C5' U B 18 -7.198 4.832 -16.319 1.00 87.97 C
ATOM 7 C4' U B 18 -6.337 4.676 -15.093 1.00 87.73 C
ATOM 8 O4' U B 18 -6.096 5.977 -14.511 1.00 88.92 O
ATOM 9 C3' U B 18 -6.923 3.843 -13.964 1.00 87.33 C
ATOM 10 O3' U B 18 -6.685 2.464 -14.287 1.00 83.64 O
ATOM 11 C2' U B 18 -6.167 4.375 -12.743 1.00 88.68 C
ATOM 12 O2' U B 18 -4.891 3.791 -12.569 1.00 91.02 O
ATOM 13 C1' U B 18 -5.960 5.849 -13.110 1.00 89.46 C
ATOM 14 N1 U B 18 -6.845 6.829 -12.464 1.00 90.18 N
ATOM 15 C2 U B 18 -6.675 7.063 -11.109 1.00 90.45 C
ATOM 16 O2 U B 18 -5.859 6.463 -10.430 1.00 90.12 O
ATOM 17 N3 U B 18 -7.498 8.026 -10.580 1.00 91.11 N
ATOM 18 C4 U B 18 -8.458 8.760 -11.251 1.00 91.45 C
ATOM 19 O4 U B 18 -9.102 9.616 -10.641 1.00 92.22 O
ATOM 20 C5 U B 18 -8.585 8.447 -12.641 1.00 90.88 C
ATOM 21 C6 U B 18 -7.797 7.513 -13.186 1.00 90.35 C
ATOM 22 P C B 19 -6.616 1.340 -13.134 1.00 81.00 P
ATOM 23 OP1 C B 19 -6.256 1.934 -11.821 1.00 82.87 O
ATOM 24 OP2 C B 19 -5.777 0.250 -13.695 1.00 81.43 O
ATOM 25 O5' C B 19 -8.097 0.770 -12.992 1.00 76.81 O
TER
ATOM 2 P C A 19 -6.616 1.340 -13.134 1.00 81.00 P
ATOM 3 OP1 C A 19 -6.256 1.934 -11.821 1.00 82.87 O
ATOM 4 OP2 C A 19 -5.777 0.250 -13.695 1.00 81.43 O
ATOM 5 O5' C A 19 -8.097 0.770 -12.992 1.00 76.81 O
ATOM 6 C5' C A 19 -8.404 -0.158 -11.951 1.00 67.20 C
ATOM 7 C4' C A 19 -9.777 -0.753 -12.150 1.00 61.79 C
ATOM 8 O4' C A 19 -10.785 0.280 -11.996 1.00 59.84 O
ATOM 9 C3' C A 19 -10.059 -1.356 -13.516 1.00 57.73 C
ATOM 10 O3' C A 19 -9.563 -2.688 -13.590 1.00 53.69 O
ATOM 11 C2' C A 19 -11.579 -1.325 -13.557 1.00 57.18 C
ATOM 12 O2' C A 19 -12.150 -2.380 -12.809 1.00 57.93 O
ATOM 13 C1' C A 19 -11.875 0.007 -12.860 1.00 57.09 C
ATOM 14 N1 C A 19 -12.029 1.142 -13.790 1.00 54.33 N
ATOM 15 C2 C A 19 -13.250 1.300 -14.455 1.00 52.81 C
ATOM 16 O2 C A 19 -14.151 0.475 -14.255 1.00 55.06 O
ATOM 17 N3 C A 19 -13.417 2.343 -15.300 1.00 50.64 N
ATOM 18 C4 C A 19 -12.419 3.205 -15.496 1.00 48.58 C
ATOM 19 N4 C A 19 -12.633 4.219 -16.333 1.00 44.97 N
ATOM 20 C5 C A 19 -11.158 3.062 -14.841 1.00 48.64 C
ATOM 21 C6 C A 19 -11.009 2.028 -14.003 1.00 50.64 C
ATOM 22 P C A 20 -9.166 -3.315 -15.015 1.00 52.88 P
ATOM 23 OP1 C A 20 -8.457 -4.595 -14.788 1.00 52.84 O
ATOM 24 OP2 C A 20 -8.508 -2.248 -15.814 1.00 53.09 O
ATOM 25 O5' C A 20 -10.569 -3.633 -15.698 1.00 50.60 O
TER
ATOM 1 O3' U B 17 -8.649 7.102 -17.822 1.00 90.97 O
ATOM 2 P U B 18 -9.446 5.901 -17.107 1.00 89.15 P
ATOM 3 OP1 U B 18 -9.597 4.798 -18.094 1.00 90.08 O
ATOM 4 OP2 U B 18 -10.649 6.475 -16.464 1.00 89.45 O
ATOM 5 O5' U B 18 -8.450 5.405 -15.971 1.00 88.13 O
ATOM 6 C5' U B 18 -7.198 4.832 -16.319 1.00 87.97 C
ATOM 7 C4' U B 18 -6.337 4.676 -15.093 1.00 87.73 C
ATOM 8 O4' U B 18 -6.096 5.977 -14.511 1.00 88.92 O
ATOM 9 C3' U B 18 -6.923 3.843 -13.964 1.00 87.33 C
ATOM 10 O3' U B 18 -6.685 2.464 -14.287 1.00 83.64 O
ATOM 11 C2' U B 18 -6.167 4.375 -12.743 1.00 88.68 C
ATOM 12 O2' U B 18 -4.891 3.791 -12.569 1.00 91.02 O
ATOM 13 C1' U B 18 -5.960 5.849 -13.110 1.00 89.46 C
ATOM 14 N1 U B 18 -6.845 6.829 -12.464 1.00 90.18 N
ATOM 15 C2 U B 18 -6.675 7.063 -11.109 1.00 90.45 C
ATOM 16 O2 U B 18 -5.859 6.463 -10.430 1.00 90.12 O
ATOM 17 N3 U B 18 -7.498 8.026 -10.580 1.00 91.11 N
ATOM 18 C4 U B 18 -8.458 8.760 -11.251 1.00 91.45 C
ATOM 19 O4 U B 18 -9.102 9.616 -10.641 1.00 92.22 O
ATOM 20 C5 U B 18 -8.585 8.447 -12.641 1.00 90.88 C
ATOM 21 C6 U B 18 -7.797 7.513 -13.186 1.00 90.35 C
ATOM 22 P C B 19 -6.616 1.340 -13.134 1.00 81.00 P
ATOM 23 OP1 C B 19 -6.256 1.934 -11.821 1.00 82.87 O
ATOM 24 OP2 C B 19 -5.777 0.250 -13.695 1.00 81.43 O
ATOM 25 O5' C B 19 -8.097 0.770 -12.992 1.00 76.81 O
TER
Atoms:
C2: (-13.250,1.300,-14.455)
OP1: (-6.256,1.934,-11.821)
OP2: (-5.777,0.250,-13.695)
C4: (-12.419,3.205,-15.496)
O5': (-8.097,0.770,-12.992)
C3': (-10.059,-1.356,-13.516)
C1': (-11.875,0.007,-12.860)
O4': (-10.785,0.280,-11.996)
C5': (-8.404,-0.158,-11.951)
P: (-6.616,1.340,-13.134)
O2: (-14.151,0.475,-14.255)
C4': (-9.777,-0.753,-12.150)
C2': (-11.579,-1.325,-13.557)
O2': (-12.150,-2.380,-12.809)
N1: (-12.029,1.142,-13.790)
N3: (-13.417,2.343,-15.300)
N4: (-12.633,4.219,-16.333)
C6: (-11.009,2.028,-14.003)
C5: (-11.158,3.062,-14.841)
O3': (-9.563,-2.688,-13.590)
OP1: (-6.256,1.934,-11.821)
OP2: (-5.777,0.250,-13.695)
C4: (-12.419,3.205,-15.496)
O5': (-8.097,0.770,-12.992)
C3': (-10.059,-1.356,-13.516)
C1': (-11.875,0.007,-12.860)
O4': (-10.785,0.280,-11.996)
C5': (-8.404,-0.158,-11.951)
P: (-6.616,1.340,-13.134)
O2: (-14.151,0.475,-14.255)
C4': (-9.777,-0.753,-12.150)
C2': (-11.579,-1.325,-13.557)
O2': (-12.150,-2.380,-12.809)
N1: (-12.029,1.142,-13.790)
N3: (-13.417,2.343,-15.300)
N4: (-12.633,4.219,-16.333)
C6: (-11.009,2.028,-14.003)
C5: (-11.158,3.062,-14.841)
O3': (-9.563,-2.688,-13.590)
C4: (-8.458,8.760,-11.251)
N3: (-7.498,8.026,-10.580)
OP1: (-9.597,4.798,-18.094)
OP2: (-10.649,6.475,-16.464)
C2: (-6.675,7.063,-11.109)
C1': (-5.960,5.849,-13.110)
C3': (-6.923,3.843,-13.964)
O5': (-8.450,5.405,-15.971)
O4': (-6.096,5.977,-14.511)
C5': (-7.198,4.832,-16.319)
P: (-9.446,5.901,-17.107)
C4': (-6.337,4.676,-15.093)
C2': (-6.167,4.375,-12.743)
O2': (-4.891,3.791,-12.569)
N1: (-6.845,6.829,-12.464)
O4: (-9.102,9.616,-10.641)
O2: (-5.859,6.463,-10.430)
C6: (-7.797,7.513,-13.186)
C5: (-8.585,8.447,-12.641)
O3': (-6.685,2.464,-14.287)
N3: (-7.498,8.026,-10.580)
OP1: (-9.597,4.798,-18.094)
OP2: (-10.649,6.475,-16.464)
C2: (-6.675,7.063,-11.109)
C1': (-5.960,5.849,-13.110)
C3': (-6.923,3.843,-13.964)
O5': (-8.450,5.405,-15.971)
O4': (-6.096,5.977,-14.511)
C5': (-7.198,4.832,-16.319)
P: (-9.446,5.901,-17.107)
C4': (-6.337,4.676,-15.093)
C2': (-6.167,4.375,-12.743)
O2': (-4.891,3.791,-12.569)
N1: (-6.845,6.829,-12.464)
O4: (-9.102,9.616,-10.641)
O2: (-5.859,6.463,-10.430)
C6: (-7.797,7.513,-13.186)
C5: (-8.585,8.447,-12.641)
O3': (-6.685,2.464,-14.287)
Image (generated by PyMOL):