Doublet info:
Details
Nucleotide types:
CU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1ZDJ:R4:R3
Extra
PDB:
ATOM 1 O3' U A 3 22.259 104.695 18.717 0.60 73.54 O
ATOM 2 P C A 4 21.186 105.779 19.181 0.60 73.53 P
ATOM 3 OP1 C A 4 20.103 105.793 18.169 0.60 74.43 O
ATOM 4 OP2 C A 4 21.863 107.066 19.515 0.60 70.90 O
ATOM 5 O5' C A 4 20.612 105.157 20.525 0.60 70.14 O
ATOM 6 C5' C A 4 19.453 104.309 20.480 0.60 63.58 C
ATOM 7 C4' C A 4 18.625 104.548 21.705 0.60 60.30 C
ATOM 8 O4' C A 4 19.372 104.012 22.831 0.60 57.75 O
ATOM 9 C3' C A 4 18.411 106.036 21.973 0.60 60.08 C
ATOM 10 O3' C A 4 17.129 106.220 22.594 0.60 64.63 O
ATOM 11 C2' C A 4 19.555 106.384 22.942 0.60 56.90 C
ATOM 12 O2' C A 4 19.162 107.376 23.885 0.60 59.37 O
ATOM 13 C1' C A 4 19.799 105.058 23.677 0.60 53.11 C
ATOM 14 N1 C A 4 21.202 104.760 24.050 0.60 46.92 N
ATOM 15 C2 C A 4 21.575 104.854 25.393 0.60 46.81 C
ATOM 16 O2 C A 4 20.745 105.259 26.208 0.60 46.30 O
ATOM 17 N3 C A 4 22.834 104.508 25.773 0.60 45.72 N
ATOM 18 C4 C A 4 23.712 104.088 24.855 0.60 45.65 C
ATOM 19 N4 C A 4 24.938 103.723 25.278 0.60 43.74 N
ATOM 20 C5 C A 4 23.376 104.014 23.458 0.60 44.79 C
ATOM 21 C6 C A 4 22.115 104.360 23.107 0.60 44.49 C
ATOM 22 P A A 5 15.795 106.446 21.677 0.60 65.93 P
ATOM 23 OP1 A A 5 15.825 105.561 20.475 0.60 66.82 O
ATOM 24 OP2 A A 5 15.558 107.921 21.473 0.60 64.56 O
ATOM 25 O5' A A 5 14.617 105.946 22.632 0.60 62.97 O
TER
ATOM 1 O3' A B 2 26.325 101.410 22.325 0.60 63.44 O
ATOM 2 P U B 3 26.697 102.936 22.003 0.60 63.77 P
ATOM 3 OP1 U B 3 27.892 102.907 21.132 0.60 62.84 O
ATOM 4 OP2 U B 3 26.755 103.743 23.269 0.60 61.18 O
ATOM 5 O5' U B 3 25.453 103.470 21.170 0.60 65.59 O
ATOM 6 C5' U B 3 25.603 104.554 20.235 0.60 69.70 C
ATOM 7 C4' U B 3 24.586 104.391 19.147 0.60 72.98 C
ATOM 8 O4' U B 3 24.939 103.219 18.355 0.60 75.27 O
ATOM 9 C3' U B 3 23.172 104.129 19.670 0.60 74.18 C
ATOM 10 O3' U B 3 22.259 104.695 18.717 0.60 73.54 O
ATOM 11 C2' U B 3 23.101 102.598 19.676 0.60 75.07 C
ATOM 12 O2' U B 3 21.801 102.032 19.630 0.60 73.95 O
ATOM 13 C1' U B 3 23.878 102.285 18.404 0.60 77.67 C
ATOM 14 N1 U B 3 24.402 100.922 18.208 0.60 81.76 N
ATOM 15 C2 U B 3 25.774 100.690 18.336 0.60 84.32 C
ATOM 16 O2 U B 3 26.560 101.528 18.736 0.60 85.04 O
ATOM 17 N3 U B 3 26.178 99.424 17.985 0.60 86.36 N
ATOM 18 C4 U B 3 25.361 98.375 17.567 0.60 87.77 C
ATOM 19 O4 U B 3 25.871 97.329 17.153 0.60 89.87 O
ATOM 20 C5 U B 3 23.962 98.685 17.543 0.60 86.78 C
ATOM 21 C6 U B 3 23.546 99.911 17.857 0.60 84.09 C
ATOM 22 P C B 4 21.186 105.779 19.181 0.60 73.53 P
ATOM 23 OP1 C B 4 20.103 105.793 18.169 0.60 74.43 O
ATOM 24 OP2 C B 4 21.863 107.066 19.515 0.60 70.90 O
ATOM 25 O5' C B 4 20.612 105.157 20.525 0.60 70.14 O
TER
ATOM 2 P C A 4 21.186 105.779 19.181 0.60 73.53 P
ATOM 3 OP1 C A 4 20.103 105.793 18.169 0.60 74.43 O
ATOM 4 OP2 C A 4 21.863 107.066 19.515 0.60 70.90 O
ATOM 5 O5' C A 4 20.612 105.157 20.525 0.60 70.14 O
ATOM 6 C5' C A 4 19.453 104.309 20.480 0.60 63.58 C
ATOM 7 C4' C A 4 18.625 104.548 21.705 0.60 60.30 C
ATOM 8 O4' C A 4 19.372 104.012 22.831 0.60 57.75 O
ATOM 9 C3' C A 4 18.411 106.036 21.973 0.60 60.08 C
ATOM 10 O3' C A 4 17.129 106.220 22.594 0.60 64.63 O
ATOM 11 C2' C A 4 19.555 106.384 22.942 0.60 56.90 C
ATOM 12 O2' C A 4 19.162 107.376 23.885 0.60 59.37 O
ATOM 13 C1' C A 4 19.799 105.058 23.677 0.60 53.11 C
ATOM 14 N1 C A 4 21.202 104.760 24.050 0.60 46.92 N
ATOM 15 C2 C A 4 21.575 104.854 25.393 0.60 46.81 C
ATOM 16 O2 C A 4 20.745 105.259 26.208 0.60 46.30 O
ATOM 17 N3 C A 4 22.834 104.508 25.773 0.60 45.72 N
ATOM 18 C4 C A 4 23.712 104.088 24.855 0.60 45.65 C
ATOM 19 N4 C A 4 24.938 103.723 25.278 0.60 43.74 N
ATOM 20 C5 C A 4 23.376 104.014 23.458 0.60 44.79 C
ATOM 21 C6 C A 4 22.115 104.360 23.107 0.60 44.49 C
ATOM 22 P A A 5 15.795 106.446 21.677 0.60 65.93 P
ATOM 23 OP1 A A 5 15.825 105.561 20.475 0.60 66.82 O
ATOM 24 OP2 A A 5 15.558 107.921 21.473 0.60 64.56 O
ATOM 25 O5' A A 5 14.617 105.946 22.632 0.60 62.97 O
TER
ATOM 1 O3' A B 2 26.325 101.410 22.325 0.60 63.44 O
ATOM 2 P U B 3 26.697 102.936 22.003 0.60 63.77 P
ATOM 3 OP1 U B 3 27.892 102.907 21.132 0.60 62.84 O
ATOM 4 OP2 U B 3 26.755 103.743 23.269 0.60 61.18 O
ATOM 5 O5' U B 3 25.453 103.470 21.170 0.60 65.59 O
ATOM 6 C5' U B 3 25.603 104.554 20.235 0.60 69.70 C
ATOM 7 C4' U B 3 24.586 104.391 19.147 0.60 72.98 C
ATOM 8 O4' U B 3 24.939 103.219 18.355 0.60 75.27 O
ATOM 9 C3' U B 3 23.172 104.129 19.670 0.60 74.18 C
ATOM 10 O3' U B 3 22.259 104.695 18.717 0.60 73.54 O
ATOM 11 C2' U B 3 23.101 102.598 19.676 0.60 75.07 C
ATOM 12 O2' U B 3 21.801 102.032 19.630 0.60 73.95 O
ATOM 13 C1' U B 3 23.878 102.285 18.404 0.60 77.67 C
ATOM 14 N1 U B 3 24.402 100.922 18.208 0.60 81.76 N
ATOM 15 C2 U B 3 25.774 100.690 18.336 0.60 84.32 C
ATOM 16 O2 U B 3 26.560 101.528 18.736 0.60 85.04 O
ATOM 17 N3 U B 3 26.178 99.424 17.985 0.60 86.36 N
ATOM 18 C4 U B 3 25.361 98.375 17.567 0.60 87.77 C
ATOM 19 O4 U B 3 25.871 97.329 17.153 0.60 89.87 O
ATOM 20 C5 U B 3 23.962 98.685 17.543 0.60 86.78 C
ATOM 21 C6 U B 3 23.546 99.911 17.857 0.60 84.09 C
ATOM 22 P C B 4 21.186 105.779 19.181 0.60 73.53 P
ATOM 23 OP1 C B 4 20.103 105.793 18.169 0.60 74.43 O
ATOM 24 OP2 C B 4 21.863 107.066 19.515 0.60 70.90 O
ATOM 25 O5' C B 4 20.612 105.157 20.525 0.60 70.14 O
TER
Atoms:
C2: (21.575,104.854,25.393)
OP1: (20.103,105.793,18.169)
OP2: (21.863,107.066,19.515)
C4: (23.712,104.088,24.855)
O5': (20.612,105.157,20.525)
C3': (18.411,106.036,21.973)
C1': (19.799,105.058,23.677)
O4': (19.372,104.012,22.831)
C5': (19.453,104.309,20.480)
P: (21.186,105.779,19.181)
O2: (20.745,105.259,26.208)
C4': (18.625,104.548,21.705)
C2': (19.555,106.384,22.942)
O2': (19.162,107.376,23.885)
N1: (21.202,104.760,24.050)
N3: (22.834,104.508,25.773)
N4: (24.938,103.723,25.278)
C6: (22.115,104.360,23.107)
C5: (23.376,104.014,23.458)
O3': (17.129,106.220,22.594)
OP1: (20.103,105.793,18.169)
OP2: (21.863,107.066,19.515)
C4: (23.712,104.088,24.855)
O5': (20.612,105.157,20.525)
C3': (18.411,106.036,21.973)
C1': (19.799,105.058,23.677)
O4': (19.372,104.012,22.831)
C5': (19.453,104.309,20.480)
P: (21.186,105.779,19.181)
O2: (20.745,105.259,26.208)
C4': (18.625,104.548,21.705)
C2': (19.555,106.384,22.942)
O2': (19.162,107.376,23.885)
N1: (21.202,104.760,24.050)
N3: (22.834,104.508,25.773)
N4: (24.938,103.723,25.278)
C6: (22.115,104.360,23.107)
C5: (23.376,104.014,23.458)
O3': (17.129,106.220,22.594)
C4: (25.361,98.375,17.567)
N3: (26.178,99.424,17.985)
OP1: (27.892,102.907,21.132)
OP2: (26.755,103.743,23.269)
C2: (25.774,100.690,18.336)
C1': (23.878,102.285,18.404)
C3': (23.172,104.129,19.670)
O5': (25.453,103.470,21.170)
O4': (24.939,103.219,18.355)
C5': (25.603,104.554,20.235)
P: (26.697,102.936,22.003)
C4': (24.586,104.391,19.147)
C2': (23.101,102.598,19.676)
O2': (21.801,102.032,19.630)
N1: (24.402,100.922,18.208)
O4: (25.871,97.329,17.153)
O2: (26.560,101.528,18.736)
C6: (23.546,99.911,17.857)
C5: (23.962,98.685,17.543)
O3': (22.259,104.695,18.717)
N3: (26.178,99.424,17.985)
OP1: (27.892,102.907,21.132)
OP2: (26.755,103.743,23.269)
C2: (25.774,100.690,18.336)
C1': (23.878,102.285,18.404)
C3': (23.172,104.129,19.670)
O5': (25.453,103.470,21.170)
O4': (24.939,103.219,18.355)
C5': (25.603,104.554,20.235)
P: (26.697,102.936,22.003)
C4': (24.586,104.391,19.147)
C2': (23.101,102.598,19.676)
O2': (21.801,102.032,19.630)
N1: (24.402,100.922,18.208)
O4: (25.871,97.329,17.153)
O2: (26.560,101.528,18.736)
C6: (23.546,99.911,17.857)
C5: (23.962,98.685,17.543)
O3': (22.259,104.695,18.717)
Image (generated by PyMOL):