Doublet info:
Details
Nucleotide types:
CU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1KD1:A1085:A1084
Extra
PDB:
ATOM 1 O3' U A1084 42.652 94.349 115.237 1.00 40.14 O
ATOM 2 P C A1085 44.004 95.019 115.773 1.00 42.73 P
ATOM 3 OP1 C A1085 45.128 94.189 115.297 1.00 42.60 O
ATOM 4 OP2 C A1085 43.884 95.316 117.222 1.00 39.24 O
ATOM 5 O5' C A1085 44.070 96.361 114.926 1.00 40.89 O
ATOM 6 C5' C A1085 44.057 96.278 113.494 1.00 41.65 C
ATOM 7 C4' C A1085 44.192 97.643 112.872 1.00 41.05 C
ATOM 8 O4' C A1085 43.092 98.455 113.316 1.00 41.01 O
ATOM 9 C3' C A1085 45.443 98.440 113.204 1.00 40.62 C
ATOM 10 O3' C A1085 45.656 99.352 112.124 1.00 40.84 O
ATOM 11 C2' C A1085 45.019 99.193 114.456 1.00 39.82 C
ATOM 12 O2' C A1085 45.725 100.402 114.639 1.00 42.03 O
ATOM 13 C1' C A1085 43.573 99.507 114.116 1.00 39.07 C
ATOM 14 N1 C A1085 42.692 99.614 115.270 1.00 37.69 N
ATOM 15 C2 C A1085 42.016 100.800 115.464 1.00 37.87 C
ATOM 16 O2 C A1085 42.235 101.743 114.687 1.00 38.76 O
ATOM 17 N3 C A1085 41.143 100.896 116.487 1.00 36.26 N
ATOM 18 C4 C A1085 40.954 99.855 117.305 1.00 34.69 C
ATOM 19 N4 C A1085 40.071 99.983 118.291 1.00 34.79 N
ATOM 20 C5 C A1085 41.662 98.637 117.144 1.00 35.48 C
ATOM 21 C6 C A1085 42.515 98.562 116.124 1.00 36.75 C
ATOM 22 P C A1086 47.095 99.431 111.402 1.00 41.36 P
ATOM 23 OP1 C A1086 46.969 100.208 110.143 1.00 42.61 O
ATOM 24 OP2 C A1086 47.660 98.069 111.358 1.00 40.05 O
ATOM 25 O5' C A1086 47.947 100.326 112.394 1.00 39.73 O
TER
ATOM 1 O3' A B1083 38.546 95.008 119.592 1.00 41.41 O
ATOM 2 P U B1084 39.921 95.787 119.450 1.00 39.24 P
ATOM 3 OP1 U B1084 40.928 95.130 120.315 1.00 40.12 O
ATOM 4 OP2 U B1084 39.587 97.203 119.652 1.00 38.55 O
ATOM 5 O5' U B1084 40.307 95.542 117.929 1.00 37.72 O
ATOM 6 C5' U B1084 40.422 94.201 117.408 1.00 38.63 C
ATOM 7 C4' U B1084 40.375 94.217 115.899 1.00 40.22 C
ATOM 8 O4' U B1084 39.129 94.782 115.443 1.00 39.13 O
ATOM 9 C3' U B1084 41.437 95.092 115.274 1.00 40.03 C
ATOM 10 O3' U B1084 42.652 94.349 115.237 1.00 40.14 O
ATOM 11 C2' U B1084 40.844 95.450 113.910 1.00 39.50 C
ATOM 12 O2' U B1084 41.043 94.470 112.909 1.00 39.52 O
ATOM 13 C1' U B1084 39.344 95.493 114.232 1.00 39.76 C
ATOM 14 N1 U B1084 38.728 96.821 114.376 1.00 40.07 N
ATOM 15 C2 U B1084 38.365 97.544 113.238 1.00 40.79 C
ATOM 16 O2 U B1084 38.567 97.165 112.093 1.00 43.66 O
ATOM 17 N3 U B1084 37.761 98.744 113.500 1.00 39.92 N
ATOM 18 C4 U B1084 37.504 99.294 114.742 1.00 40.68 C
ATOM 19 O4 U B1084 36.975 100.407 114.828 1.00 41.11 O
ATOM 20 C5 U B1084 37.918 98.499 115.832 1.00 40.48 C
ATOM 21 C6 U B1084 38.499 97.325 115.620 1.00 40.08 C
ATOM 22 P C B1085 44.004 95.019 115.773 1.00 42.73 P
ATOM 23 OP1 C B1085 45.128 94.189 115.297 1.00 42.60 O
ATOM 24 OP2 C B1085 43.884 95.316 117.222 1.00 39.24 O
ATOM 25 O5' C B1085 44.070 96.361 114.926 1.00 40.89 O
TER
ATOM 2 P C A1085 44.004 95.019 115.773 1.00 42.73 P
ATOM 3 OP1 C A1085 45.128 94.189 115.297 1.00 42.60 O
ATOM 4 OP2 C A1085 43.884 95.316 117.222 1.00 39.24 O
ATOM 5 O5' C A1085 44.070 96.361 114.926 1.00 40.89 O
ATOM 6 C5' C A1085 44.057 96.278 113.494 1.00 41.65 C
ATOM 7 C4' C A1085 44.192 97.643 112.872 1.00 41.05 C
ATOM 8 O4' C A1085 43.092 98.455 113.316 1.00 41.01 O
ATOM 9 C3' C A1085 45.443 98.440 113.204 1.00 40.62 C
ATOM 10 O3' C A1085 45.656 99.352 112.124 1.00 40.84 O
ATOM 11 C2' C A1085 45.019 99.193 114.456 1.00 39.82 C
ATOM 12 O2' C A1085 45.725 100.402 114.639 1.00 42.03 O
ATOM 13 C1' C A1085 43.573 99.507 114.116 1.00 39.07 C
ATOM 14 N1 C A1085 42.692 99.614 115.270 1.00 37.69 N
ATOM 15 C2 C A1085 42.016 100.800 115.464 1.00 37.87 C
ATOM 16 O2 C A1085 42.235 101.743 114.687 1.00 38.76 O
ATOM 17 N3 C A1085 41.143 100.896 116.487 1.00 36.26 N
ATOM 18 C4 C A1085 40.954 99.855 117.305 1.00 34.69 C
ATOM 19 N4 C A1085 40.071 99.983 118.291 1.00 34.79 N
ATOM 20 C5 C A1085 41.662 98.637 117.144 1.00 35.48 C
ATOM 21 C6 C A1085 42.515 98.562 116.124 1.00 36.75 C
ATOM 22 P C A1086 47.095 99.431 111.402 1.00 41.36 P
ATOM 23 OP1 C A1086 46.969 100.208 110.143 1.00 42.61 O
ATOM 24 OP2 C A1086 47.660 98.069 111.358 1.00 40.05 O
ATOM 25 O5' C A1086 47.947 100.326 112.394 1.00 39.73 O
TER
ATOM 1 O3' A B1083 38.546 95.008 119.592 1.00 41.41 O
ATOM 2 P U B1084 39.921 95.787 119.450 1.00 39.24 P
ATOM 3 OP1 U B1084 40.928 95.130 120.315 1.00 40.12 O
ATOM 4 OP2 U B1084 39.587 97.203 119.652 1.00 38.55 O
ATOM 5 O5' U B1084 40.307 95.542 117.929 1.00 37.72 O
ATOM 6 C5' U B1084 40.422 94.201 117.408 1.00 38.63 C
ATOM 7 C4' U B1084 40.375 94.217 115.899 1.00 40.22 C
ATOM 8 O4' U B1084 39.129 94.782 115.443 1.00 39.13 O
ATOM 9 C3' U B1084 41.437 95.092 115.274 1.00 40.03 C
ATOM 10 O3' U B1084 42.652 94.349 115.237 1.00 40.14 O
ATOM 11 C2' U B1084 40.844 95.450 113.910 1.00 39.50 C
ATOM 12 O2' U B1084 41.043 94.470 112.909 1.00 39.52 O
ATOM 13 C1' U B1084 39.344 95.493 114.232 1.00 39.76 C
ATOM 14 N1 U B1084 38.728 96.821 114.376 1.00 40.07 N
ATOM 15 C2 U B1084 38.365 97.544 113.238 1.00 40.79 C
ATOM 16 O2 U B1084 38.567 97.165 112.093 1.00 43.66 O
ATOM 17 N3 U B1084 37.761 98.744 113.500 1.00 39.92 N
ATOM 18 C4 U B1084 37.504 99.294 114.742 1.00 40.68 C
ATOM 19 O4 U B1084 36.975 100.407 114.828 1.00 41.11 O
ATOM 20 C5 U B1084 37.918 98.499 115.832 1.00 40.48 C
ATOM 21 C6 U B1084 38.499 97.325 115.620 1.00 40.08 C
ATOM 22 P C B1085 44.004 95.019 115.773 1.00 42.73 P
ATOM 23 OP1 C B1085 45.128 94.189 115.297 1.00 42.60 O
ATOM 24 OP2 C B1085 43.884 95.316 117.222 1.00 39.24 O
ATOM 25 O5' C B1085 44.070 96.361 114.926 1.00 40.89 O
TER
Atoms:
C2: (42.016,100.800,115.464)
OP1: (45.128,94.189,115.297)
OP2: (43.884,95.316,117.222)
C4: (40.954,99.855,117.305)
O5': (44.070,96.361,114.926)
C3': (45.443,98.440,113.204)
C1': (43.573,99.507,114.116)
O4': (43.092,98.455,113.316)
C5': (44.057,96.278,113.494)
P: (44.004,95.019,115.773)
O2: (42.235,101.743,114.687)
C4': (44.192,97.643,112.872)
C2': (45.019,99.193,114.456)
O2': (45.725,100.402,114.639)
N1: (42.692,99.614,115.270)
N3: (41.143,100.896,116.487)
N4: (40.071,99.983,118.291)
C6: (42.515,98.562,116.124)
C5: (41.662,98.637,117.144)
O3': (45.656,99.352,112.124)
OP1: (45.128,94.189,115.297)
OP2: (43.884,95.316,117.222)
C4: (40.954,99.855,117.305)
O5': (44.070,96.361,114.926)
C3': (45.443,98.440,113.204)
C1': (43.573,99.507,114.116)
O4': (43.092,98.455,113.316)
C5': (44.057,96.278,113.494)
P: (44.004,95.019,115.773)
O2: (42.235,101.743,114.687)
C4': (44.192,97.643,112.872)
C2': (45.019,99.193,114.456)
O2': (45.725,100.402,114.639)
N1: (42.692,99.614,115.270)
N3: (41.143,100.896,116.487)
N4: (40.071,99.983,118.291)
C6: (42.515,98.562,116.124)
C5: (41.662,98.637,117.144)
O3': (45.656,99.352,112.124)
C4: (37.504,99.294,114.742)
N3: (37.761,98.744,113.500)
OP1: (40.928,95.130,120.315)
OP2: (39.587,97.203,119.652)
C2: (38.365,97.544,113.238)
C1': (39.344,95.493,114.232)
C3': (41.437,95.092,115.274)
O5': (40.307,95.542,117.929)
O4': (39.129,94.782,115.443)
C5': (40.422,94.201,117.408)
P: (39.921,95.787,119.450)
C4': (40.375,94.217,115.899)
C2': (40.844,95.450,113.910)
O2': (41.043,94.470,112.909)
N1: (38.728,96.821,114.376)
O4: (36.975,100.407,114.828)
O2: (38.567,97.165,112.093)
C6: (38.499,97.325,115.620)
C5: (37.918,98.499,115.832)
O3': (42.652,94.349,115.237)
N3: (37.761,98.744,113.500)
OP1: (40.928,95.130,120.315)
OP2: (39.587,97.203,119.652)
C2: (38.365,97.544,113.238)
C1': (39.344,95.493,114.232)
C3': (41.437,95.092,115.274)
O5': (40.307,95.542,117.929)
O4': (39.129,94.782,115.443)
C5': (40.422,94.201,117.408)
P: (39.921,95.787,119.450)
C4': (40.375,94.217,115.899)
C2': (40.844,95.450,113.910)
O2': (41.043,94.470,112.909)
N1: (38.728,96.821,114.376)
O4: (36.975,100.407,114.828)
O2: (38.567,97.165,112.093)
C6: (38.499,97.325,115.620)
C5: (37.918,98.499,115.832)
O3': (42.652,94.349,115.237)
Image (generated by PyMOL):