Doublet info:
Details
Nucleotide types:
CU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJN:01088:01087
Extra
PDB:
ATOM 1 O3' U A1087 45.073 105.698 117.252 1.00 51.95 O
ATOM 2 P C A1088 45.173 106.018 118.822 1.00 57.29 P
ATOM 3 OP1 C A1088 44.611 107.383 119.058 1.00 56.51 O
ATOM 4 OP2 C A1088 46.565 105.710 119.261 1.00 56.48 O
ATOM 5 O5' C A1088 44.202 104.946 119.495 1.00 57.09 O
ATOM 6 C5' C A1088 42.869 105.299 119.896 1.00 56.28 C
ATOM 7 C4' C A1088 42.164 104.096 120.466 1.00 56.85 C
ATOM 8 O4' C A1088 42.033 103.079 119.446 1.00 54.52 O
ATOM 9 C3' C A1088 42.898 103.375 121.578 1.00 58.83 C
ATOM 10 O3' C A1088 42.694 104.014 122.824 1.00 64.26 O
ATOM 11 C2' C A1088 42.238 102.004 121.561 1.00 57.65 C
ATOM 12 O2' C A1088 41.016 101.964 122.269 1.00 57.64 O
ATOM 13 C1' C A1088 41.990 101.804 120.063 1.00 55.30 C
ATOM 14 N1 C A1088 42.986 100.926 119.429 1.00 55.12 N
ATOM 15 C2 C A1088 42.964 99.566 119.743 1.00 55.38 C
ATOM 16 O2 C A1088 42.090 99.144 120.519 1.00 55.52 O
ATOM 17 N3 C A1088 43.888 98.745 119.195 1.00 55.88 N
ATOM 18 C4 C A1088 44.802 99.235 118.356 1.00 56.08 C
ATOM 19 N4 C A1088 45.701 98.388 117.851 1.00 55.75 N
ATOM 20 C5 C A1088 44.836 100.615 118.002 1.00 55.33 C
ATOM 21 C6 C A1088 43.920 101.417 118.558 1.00 55.28 C
ATOM 22 P U A1089 43.918 104.752 123.548 1.00 68.55 P
ATOM 23 OP1 U A1089 43.495 105.023 124.949 1.00 67.13 O
ATOM 24 OP2 U A1089 44.367 105.878 122.676 1.00 68.80 O
ATOM 25 O5' U A1089 45.070 103.658 123.566 1.00 71.07 O
TER
ATOM 1 O3' C B1086 49.670 101.478 115.007 1.00 47.46 O
ATOM 2 P U B1087 48.463 101.128 116.009 1.00 48.36 P
ATOM 3 OP1 U B1087 49.032 101.088 117.380 1.00 47.87 O
ATOM 4 OP2 U B1087 47.769 99.926 115.472 1.00 47.26 O
ATOM 5 O5' U B1087 47.508 102.398 115.912 1.00 47.41 O
ATOM 6 C5' U B1087 48.009 103.702 116.235 1.00 47.86 C
ATOM 7 C4' U B1087 46.934 104.748 116.074 1.00 48.98 C
ATOM 8 O4' U B1087 46.650 104.950 114.663 1.00 49.34 O
ATOM 9 C3' U B1087 45.593 104.476 116.752 1.00 49.57 C
ATOM 10 O3' U B1087 45.073 105.698 117.252 1.00 51.95 O
ATOM 11 C2' U B1087 44.730 103.995 115.591 1.00 50.00 C
ATOM 12 O2' U B1087 43.354 104.232 115.789 1.00 50.81 O
ATOM 13 C1' U B1087 45.257 104.866 114.454 1.00 50.04 C
ATOM 14 N1 U B1087 45.010 104.371 113.092 1.00 50.08 N
ATOM 15 C2 U B1087 44.458 105.261 112.187 1.00 51.43 C
ATOM 16 O2 U B1087 44.167 106.410 112.478 1.00 52.80 O
ATOM 17 N3 U B1087 44.256 104.756 110.925 1.00 51.39 N
ATOM 18 C4 U B1087 44.540 103.478 110.485 1.00 51.85 C
ATOM 19 O4 U B1087 44.332 103.184 109.305 1.00 51.19 O
ATOM 20 C5 U B1087 45.104 102.615 111.482 1.00 51.46 C
ATOM 21 C6 U B1087 45.315 103.080 112.719 1.00 50.50 C
ATOM 22 P C B1088 45.173 106.018 118.822 1.00 57.29 P
ATOM 23 OP1 C B1088 44.611 107.383 119.058 1.00 56.51 O
ATOM 24 OP2 C B1088 46.565 105.710 119.261 1.00 56.48 O
ATOM 25 O5' C B1088 44.202 104.946 119.495 1.00 57.09 O
TER
ATOM 2 P C A1088 45.173 106.018 118.822 1.00 57.29 P
ATOM 3 OP1 C A1088 44.611 107.383 119.058 1.00 56.51 O
ATOM 4 OP2 C A1088 46.565 105.710 119.261 1.00 56.48 O
ATOM 5 O5' C A1088 44.202 104.946 119.495 1.00 57.09 O
ATOM 6 C5' C A1088 42.869 105.299 119.896 1.00 56.28 C
ATOM 7 C4' C A1088 42.164 104.096 120.466 1.00 56.85 C
ATOM 8 O4' C A1088 42.033 103.079 119.446 1.00 54.52 O
ATOM 9 C3' C A1088 42.898 103.375 121.578 1.00 58.83 C
ATOM 10 O3' C A1088 42.694 104.014 122.824 1.00 64.26 O
ATOM 11 C2' C A1088 42.238 102.004 121.561 1.00 57.65 C
ATOM 12 O2' C A1088 41.016 101.964 122.269 1.00 57.64 O
ATOM 13 C1' C A1088 41.990 101.804 120.063 1.00 55.30 C
ATOM 14 N1 C A1088 42.986 100.926 119.429 1.00 55.12 N
ATOM 15 C2 C A1088 42.964 99.566 119.743 1.00 55.38 C
ATOM 16 O2 C A1088 42.090 99.144 120.519 1.00 55.52 O
ATOM 17 N3 C A1088 43.888 98.745 119.195 1.00 55.88 N
ATOM 18 C4 C A1088 44.802 99.235 118.356 1.00 56.08 C
ATOM 19 N4 C A1088 45.701 98.388 117.851 1.00 55.75 N
ATOM 20 C5 C A1088 44.836 100.615 118.002 1.00 55.33 C
ATOM 21 C6 C A1088 43.920 101.417 118.558 1.00 55.28 C
ATOM 22 P U A1089 43.918 104.752 123.548 1.00 68.55 P
ATOM 23 OP1 U A1089 43.495 105.023 124.949 1.00 67.13 O
ATOM 24 OP2 U A1089 44.367 105.878 122.676 1.00 68.80 O
ATOM 25 O5' U A1089 45.070 103.658 123.566 1.00 71.07 O
TER
ATOM 1 O3' C B1086 49.670 101.478 115.007 1.00 47.46 O
ATOM 2 P U B1087 48.463 101.128 116.009 1.00 48.36 P
ATOM 3 OP1 U B1087 49.032 101.088 117.380 1.00 47.87 O
ATOM 4 OP2 U B1087 47.769 99.926 115.472 1.00 47.26 O
ATOM 5 O5' U B1087 47.508 102.398 115.912 1.00 47.41 O
ATOM 6 C5' U B1087 48.009 103.702 116.235 1.00 47.86 C
ATOM 7 C4' U B1087 46.934 104.748 116.074 1.00 48.98 C
ATOM 8 O4' U B1087 46.650 104.950 114.663 1.00 49.34 O
ATOM 9 C3' U B1087 45.593 104.476 116.752 1.00 49.57 C
ATOM 10 O3' U B1087 45.073 105.698 117.252 1.00 51.95 O
ATOM 11 C2' U B1087 44.730 103.995 115.591 1.00 50.00 C
ATOM 12 O2' U B1087 43.354 104.232 115.789 1.00 50.81 O
ATOM 13 C1' U B1087 45.257 104.866 114.454 1.00 50.04 C
ATOM 14 N1 U B1087 45.010 104.371 113.092 1.00 50.08 N
ATOM 15 C2 U B1087 44.458 105.261 112.187 1.00 51.43 C
ATOM 16 O2 U B1087 44.167 106.410 112.478 1.00 52.80 O
ATOM 17 N3 U B1087 44.256 104.756 110.925 1.00 51.39 N
ATOM 18 C4 U B1087 44.540 103.478 110.485 1.00 51.85 C
ATOM 19 O4 U B1087 44.332 103.184 109.305 1.00 51.19 O
ATOM 20 C5 U B1087 45.104 102.615 111.482 1.00 51.46 C
ATOM 21 C6 U B1087 45.315 103.080 112.719 1.00 50.50 C
ATOM 22 P C B1088 45.173 106.018 118.822 1.00 57.29 P
ATOM 23 OP1 C B1088 44.611 107.383 119.058 1.00 56.51 O
ATOM 24 OP2 C B1088 46.565 105.710 119.261 1.00 56.48 O
ATOM 25 O5' C B1088 44.202 104.946 119.495 1.00 57.09 O
TER
Atoms:
C2: (42.964,99.566,119.743)
OP1: (44.611,107.383,119.058)
OP2: (46.565,105.710,119.261)
C4: (44.802,99.235,118.356)
O5': (44.202,104.946,119.495)
C3': (42.898,103.375,121.578)
C1': (41.990,101.804,120.063)
O4': (42.033,103.079,119.446)
C5': (42.869,105.299,119.896)
P: (45.173,106.018,118.822)
O2: (42.090,99.144,120.519)
C4': (42.164,104.096,120.466)
C2': (42.238,102.004,121.561)
O2': (41.016,101.964,122.269)
N1: (42.986,100.926,119.429)
N3: (43.888,98.745,119.195)
N4: (45.701,98.388,117.851)
C6: (43.920,101.417,118.558)
C5: (44.836,100.615,118.002)
O3': (42.694,104.014,122.824)
OP1: (44.611,107.383,119.058)
OP2: (46.565,105.710,119.261)
C4: (44.802,99.235,118.356)
O5': (44.202,104.946,119.495)
C3': (42.898,103.375,121.578)
C1': (41.990,101.804,120.063)
O4': (42.033,103.079,119.446)
C5': (42.869,105.299,119.896)
P: (45.173,106.018,118.822)
O2: (42.090,99.144,120.519)
C4': (42.164,104.096,120.466)
C2': (42.238,102.004,121.561)
O2': (41.016,101.964,122.269)
N1: (42.986,100.926,119.429)
N3: (43.888,98.745,119.195)
N4: (45.701,98.388,117.851)
C6: (43.920,101.417,118.558)
C5: (44.836,100.615,118.002)
O3': (42.694,104.014,122.824)
C4: (44.540,103.478,110.485)
N3: (44.256,104.756,110.925)
OP1: (49.032,101.088,117.380)
OP2: (47.769,99.926,115.472)
C2: (44.458,105.261,112.187)
C1': (45.257,104.866,114.454)
C3': (45.593,104.476,116.752)
O5': (47.508,102.398,115.912)
O4': (46.650,104.950,114.663)
C5': (48.009,103.702,116.235)
P: (48.463,101.128,116.009)
C4': (46.934,104.748,116.074)
C2': (44.730,103.995,115.591)
O2': (43.354,104.232,115.789)
N1: (45.010,104.371,113.092)
O4: (44.332,103.184,109.305)
O2: (44.167,106.410,112.478)
C6: (45.315,103.080,112.719)
C5: (45.104,102.615,111.482)
O3': (45.073,105.698,117.252)
N3: (44.256,104.756,110.925)
OP1: (49.032,101.088,117.380)
OP2: (47.769,99.926,115.472)
C2: (44.458,105.261,112.187)
C1': (45.257,104.866,114.454)
C3': (45.593,104.476,116.752)
O5': (47.508,102.398,115.912)
O4': (46.650,104.950,114.663)
C5': (48.009,103.702,116.235)
P: (48.463,101.128,116.009)
C4': (46.934,104.748,116.074)
C2': (44.730,103.995,115.591)
O2': (43.354,104.232,115.789)
N1: (45.010,104.371,113.092)
O4: (44.332,103.184,109.305)
O2: (44.167,106.410,112.478)
C6: (45.315,103.080,112.719)
C5: (45.104,102.615,111.482)
O3': (45.073,105.698,117.252)
Image (generated by PyMOL):