Doublet info:
Details
Nucleotide types:
CU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1ZDK:S10:S9
Extra
PDB:
ATOM 1 O3' U A 9 -15.707 106.198 5.667 0.50110.03 O
ATOM 2 P C A 10 -14.803 107.105 6.663 0.50110.65 P
ATOM 3 OP1 C A 10 -15.124 106.568 8.040 0.50111.28 O
ATOM 4 OP2 C A 10 -15.060 108.573 6.366 0.50109.76 O
ATOM 5 O5' C A 10 -13.279 106.710 6.335 0.50106.18 O
ATOM 6 C5' C A 10 -12.547 105.808 7.225 0.50 99.43 C
ATOM 7 C4' C A 10 -11.046 106.054 7.145 0.50 94.13 C
ATOM 8 O4' C A 10 -10.581 105.738 5.802 0.50 89.61 O
ATOM 9 C3' C A 10 -10.571 107.472 7.454 0.50 92.29 C
ATOM 10 O3' C A 10 -9.273 107.413 8.079 0.50 95.07 O
ATOM 11 C2' C A 10 -10.402 108.091 6.059 0.50 88.46 C
ATOM 12 O2' C A 10 -9.404 109.111 6.067 0.50 87.02 O
ATOM 13 C1' C A 10 -9.983 106.876 5.214 0.50 83.82 C
ATOM 14 N1 C A 10 -10.416 106.915 3.804 0.50 76.72 N
ATOM 15 C2 C A 10 -9.478 107.272 2.804 0.50 73.35 C
ATOM 16 O2 C A 10 -8.312 107.569 3.143 0.50 71.14 O
ATOM 17 N3 C A 10 -9.867 107.287 1.506 0.50 70.39 N
ATOM 18 C4 C A 10 -11.126 106.965 1.183 0.50 70.05 C
ATOM 19 N4 C A 10 -11.469 106.997 -0.113 0.50 67.98 N
ATOM 20 C5 C A 10 -12.098 106.601 2.176 0.50 69.99 C
ATOM 21 C6 C A 10 -11.703 106.594 3.458 0.50 72.14 C
ATOM 22 P A A 11 -9.131 107.059 9.654 0.50 95.70 P
ATOM 23 OP1 A A 11 -10.077 105.951 10.010 0.50 96.46 O
ATOM 24 OP2 A A 11 -9.167 108.353 10.457 0.50 95.03 O
ATOM 25 O5' A A 11 -7.641 106.487 9.738 0.50 94.61 O
TER
ATOM 1 O3' A B 8 -14.755 104.390 -0.311 0.50100.19 O
ATOM 2 P U B 9 -15.280 105.898 -0.130 0.50 99.97 P
ATOM 3 OP1 U B 9 -16.725 105.868 -0.534 0.50 99.36 O
ATOM 4 OP2 U B 9 -14.334 106.868 -0.790 0.50 98.29 O
ATOM 5 O5' U B 9 -15.165 106.153 1.440 0.50101.65 O
ATOM 6 C5' U B 9 -16.105 107.005 2.109 0.50105.27 C
ATOM 7 C4' U B 9 -16.506 106.384 3.417 0.50108.04 C
ATOM 8 O4' U B 9 -17.247 105.150 3.167 0.50110.00 O
ATOM 9 C3' U B 9 -15.320 106.008 4.304 0.50109.43 C
ATOM 10 O3' U B 9 -15.707 106.198 5.667 0.50110.03 O
ATOM 11 C2' U B 9 -15.186 104.509 4.065 0.50110.51 C
ATOM 12 O2' U B 9 -14.569 103.851 5.150 0.50111.04 O
ATOM 13 C1' U B 9 -16.658 104.110 3.923 0.50112.20 C
ATOM 14 N1 U B 9 -16.968 102.798 3.319 0.50114.91 N
ATOM 15 C2 U B 9 -17.953 102.005 3.958 0.50115.59 C
ATOM 16 O2 U B 9 -18.603 102.387 4.928 0.50115.87 O
ATOM 17 N3 U B 9 -18.144 100.754 3.408 0.50116.20 N
ATOM 18 C4 U B 9 -17.481 100.210 2.311 0.50116.30 C
ATOM 19 O4 U B 9 -17.655 99.013 2.027 0.50116.04 O
ATOM 20 C5 U B 9 -16.521 101.103 1.680 0.50115.90 C
ATOM 21 C6 U B 9 -16.306 102.335 2.194 0.50115.49 C
ATOM 22 P C B 10 -14.803 107.105 6.663 0.50110.65 P
ATOM 23 OP1 C B 10 -15.124 106.568 8.040 0.50111.28 O
ATOM 24 OP2 C B 10 -15.060 108.573 6.366 0.50109.76 O
ATOM 25 O5' C B 10 -13.279 106.710 6.335 0.50106.18 O
TER
ATOM 2 P C A 10 -14.803 107.105 6.663 0.50110.65 P
ATOM 3 OP1 C A 10 -15.124 106.568 8.040 0.50111.28 O
ATOM 4 OP2 C A 10 -15.060 108.573 6.366 0.50109.76 O
ATOM 5 O5' C A 10 -13.279 106.710 6.335 0.50106.18 O
ATOM 6 C5' C A 10 -12.547 105.808 7.225 0.50 99.43 C
ATOM 7 C4' C A 10 -11.046 106.054 7.145 0.50 94.13 C
ATOM 8 O4' C A 10 -10.581 105.738 5.802 0.50 89.61 O
ATOM 9 C3' C A 10 -10.571 107.472 7.454 0.50 92.29 C
ATOM 10 O3' C A 10 -9.273 107.413 8.079 0.50 95.07 O
ATOM 11 C2' C A 10 -10.402 108.091 6.059 0.50 88.46 C
ATOM 12 O2' C A 10 -9.404 109.111 6.067 0.50 87.02 O
ATOM 13 C1' C A 10 -9.983 106.876 5.214 0.50 83.82 C
ATOM 14 N1 C A 10 -10.416 106.915 3.804 0.50 76.72 N
ATOM 15 C2 C A 10 -9.478 107.272 2.804 0.50 73.35 C
ATOM 16 O2 C A 10 -8.312 107.569 3.143 0.50 71.14 O
ATOM 17 N3 C A 10 -9.867 107.287 1.506 0.50 70.39 N
ATOM 18 C4 C A 10 -11.126 106.965 1.183 0.50 70.05 C
ATOM 19 N4 C A 10 -11.469 106.997 -0.113 0.50 67.98 N
ATOM 20 C5 C A 10 -12.098 106.601 2.176 0.50 69.99 C
ATOM 21 C6 C A 10 -11.703 106.594 3.458 0.50 72.14 C
ATOM 22 P A A 11 -9.131 107.059 9.654 0.50 95.70 P
ATOM 23 OP1 A A 11 -10.077 105.951 10.010 0.50 96.46 O
ATOM 24 OP2 A A 11 -9.167 108.353 10.457 0.50 95.03 O
ATOM 25 O5' A A 11 -7.641 106.487 9.738 0.50 94.61 O
TER
ATOM 1 O3' A B 8 -14.755 104.390 -0.311 0.50100.19 O
ATOM 2 P U B 9 -15.280 105.898 -0.130 0.50 99.97 P
ATOM 3 OP1 U B 9 -16.725 105.868 -0.534 0.50 99.36 O
ATOM 4 OP2 U B 9 -14.334 106.868 -0.790 0.50 98.29 O
ATOM 5 O5' U B 9 -15.165 106.153 1.440 0.50101.65 O
ATOM 6 C5' U B 9 -16.105 107.005 2.109 0.50105.27 C
ATOM 7 C4' U B 9 -16.506 106.384 3.417 0.50108.04 C
ATOM 8 O4' U B 9 -17.247 105.150 3.167 0.50110.00 O
ATOM 9 C3' U B 9 -15.320 106.008 4.304 0.50109.43 C
ATOM 10 O3' U B 9 -15.707 106.198 5.667 0.50110.03 O
ATOM 11 C2' U B 9 -15.186 104.509 4.065 0.50110.51 C
ATOM 12 O2' U B 9 -14.569 103.851 5.150 0.50111.04 O
ATOM 13 C1' U B 9 -16.658 104.110 3.923 0.50112.20 C
ATOM 14 N1 U B 9 -16.968 102.798 3.319 0.50114.91 N
ATOM 15 C2 U B 9 -17.953 102.005 3.958 0.50115.59 C
ATOM 16 O2 U B 9 -18.603 102.387 4.928 0.50115.87 O
ATOM 17 N3 U B 9 -18.144 100.754 3.408 0.50116.20 N
ATOM 18 C4 U B 9 -17.481 100.210 2.311 0.50116.30 C
ATOM 19 O4 U B 9 -17.655 99.013 2.027 0.50116.04 O
ATOM 20 C5 U B 9 -16.521 101.103 1.680 0.50115.90 C
ATOM 21 C6 U B 9 -16.306 102.335 2.194 0.50115.49 C
ATOM 22 P C B 10 -14.803 107.105 6.663 0.50110.65 P
ATOM 23 OP1 C B 10 -15.124 106.568 8.040 0.50111.28 O
ATOM 24 OP2 C B 10 -15.060 108.573 6.366 0.50109.76 O
ATOM 25 O5' C B 10 -13.279 106.710 6.335 0.50106.18 O
TER
Atoms:
C2: (-9.478,107.272,2.804)
OP1: (-15.124,106.568,8.040)
OP2: (-15.060,108.573,6.366)
C4: (-11.126,106.965,1.183)
O5': (-13.279,106.710,6.335)
C3': (-10.571,107.472,7.454)
C1': (-9.983,106.876,5.214)
O4': (-10.581,105.738,5.802)
C5': (-12.547,105.808,7.225)
P: (-14.803,107.105,6.663)
O2: (-8.312,107.569,3.143)
C4': (-11.046,106.054,7.145)
C2': (-10.402,108.091,6.059)
O2': (-9.404,109.111,6.067)
N1: (-10.416,106.915,3.804)
N3: (-9.867,107.287,1.506)
N4: (-11.469,106.997,-0.113)
C6: (-11.703,106.594,3.458)
C5: (-12.098,106.601,2.176)
O3': (-9.273,107.413,8.079)
OP1: (-15.124,106.568,8.040)
OP2: (-15.060,108.573,6.366)
C4: (-11.126,106.965,1.183)
O5': (-13.279,106.710,6.335)
C3': (-10.571,107.472,7.454)
C1': (-9.983,106.876,5.214)
O4': (-10.581,105.738,5.802)
C5': (-12.547,105.808,7.225)
P: (-14.803,107.105,6.663)
O2: (-8.312,107.569,3.143)
C4': (-11.046,106.054,7.145)
C2': (-10.402,108.091,6.059)
O2': (-9.404,109.111,6.067)
N1: (-10.416,106.915,3.804)
N3: (-9.867,107.287,1.506)
N4: (-11.469,106.997,-0.113)
C6: (-11.703,106.594,3.458)
C5: (-12.098,106.601,2.176)
O3': (-9.273,107.413,8.079)
C4: (-17.481,100.210,2.311)
N3: (-18.144,100.754,3.408)
OP1: (-16.725,105.868,-0.534)
OP2: (-14.334,106.868,-0.790)
C2: (-17.953,102.005,3.958)
C1': (-16.658,104.110,3.923)
C3': (-15.320,106.008,4.304)
O5': (-15.165,106.153,1.440)
O4': (-17.247,105.150,3.167)
C5': (-16.105,107.005,2.109)
P: (-15.280,105.898,-0.130)
C4': (-16.506,106.384,3.417)
C2': (-15.186,104.509,4.065)
O2': (-14.569,103.851,5.150)
N1: (-16.968,102.798,3.319)
O4: (-17.655,99.013,2.027)
O2: (-18.603,102.387,4.928)
C6: (-16.306,102.335,2.194)
C5: (-16.521,101.103,1.680)
O3': (-15.707,106.198,5.667)
N3: (-18.144,100.754,3.408)
OP1: (-16.725,105.868,-0.534)
OP2: (-14.334,106.868,-0.790)
C2: (-17.953,102.005,3.958)
C1': (-16.658,104.110,3.923)
C3': (-15.320,106.008,4.304)
O5': (-15.165,106.153,1.440)
O4': (-17.247,105.150,3.167)
C5': (-16.105,107.005,2.109)
P: (-15.280,105.898,-0.130)
C4': (-16.506,106.384,3.417)
C2': (-15.186,104.509,4.065)
O2': (-14.569,103.851,5.150)
N1: (-16.968,102.798,3.319)
O4: (-17.655,99.013,2.027)
O2: (-18.603,102.387,4.928)
C6: (-16.306,102.335,2.194)
C5: (-16.521,101.103,1.680)
O3': (-15.707,106.198,5.667)
Image (generated by PyMOL):