Doublet info:
Details
Nucleotide types:
CU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1VQP:02023:02022
Extra
PDB:
ATOM 1 O3' U A2022 35.286 120.609 104.169 1.00 38.72 O
ATOM 2 P C A2023 34.382 119.703 105.134 1.00 36.96 P
ATOM 3 OP1 C A2023 33.008 119.726 104.600 1.00 39.19 O
ATOM 4 OP2 C A2023 34.631 120.156 106.523 1.00 39.25 O
ATOM 5 O5' C A2023 35.019 118.250 105.016 1.00 36.43 O
ATOM 6 C5' C A2023 34.437 117.232 104.195 1.00 34.56 C
ATOM 7 C4' C A2023 34.829 115.871 104.713 1.00 33.92 C
ATOM 8 O4' C A2023 36.266 115.692 104.617 1.00 33.31 O
ATOM 9 C3' C A2023 34.503 115.667 106.183 1.00 34.91 C
ATOM 10 O3' C A2023 33.169 115.198 106.312 1.00 36.07 O
ATOM 11 C2' C A2023 35.530 114.632 106.619 1.00 34.23 C
ATOM 12 O2' C A2023 35.170 113.318 106.264 1.00 32.87 O
ATOM 13 C1' C A2023 36.746 115.040 105.783 1.00 33.73 C
ATOM 14 N1 C A2023 37.687 115.948 106.476 1.00 34.94 N
ATOM 15 C2 C A2023 38.507 115.436 107.499 1.00 34.93 C
ATOM 16 O2 C A2023 38.359 114.257 107.869 1.00 33.96 O
ATOM 17 N3 C A2023 39.428 116.246 108.067 1.00 36.06 N
ATOM 18 C4 C A2023 39.532 117.517 107.676 1.00 34.91 C
ATOM 19 N4 C A2023 40.476 118.268 108.244 1.00 37.24 N
ATOM 20 C5 C A2023 38.681 118.073 106.683 1.00 33.62 C
ATOM 21 C6 C A2023 37.784 117.264 106.114 1.00 33.72 C
ATOM 22 P U A2024 32.199 115.847 107.409 1.00 38.87 P
ATOM 23 OP1 U A2024 30.831 115.354 107.101 1.00 40.12 O
ATOM 24 OP2 U A2024 32.457 117.301 107.474 1.00 38.16 O
ATOM 25 O5' U A2024 32.679 115.177 108.768 1.00 37.54 O
TER
ATOM 1 O3' G B2021 40.378 123.387 107.420 1.00 37.81 O
ATOM 2 P U B2022 40.242 121.885 106.880 1.00 37.26 P
ATOM 3 OP1 U B2022 39.850 121.035 108.020 1.00 40.16 O
ATOM 4 OP2 U B2022 41.469 121.561 106.124 1.00 42.19 O
ATOM 5 O5' U B2022 39.031 121.944 105.849 1.00 39.04 O
ATOM 6 C5' U B2022 37.741 122.428 106.246 1.00 35.79 C
ATOM 7 C4' U B2022 36.751 122.271 105.115 1.00 36.94 C
ATOM 8 O4' U B2022 37.126 123.148 104.012 1.00 38.64 O
ATOM 9 C3' U B2022 36.636 120.866 104.523 1.00 38.01 C
ATOM 10 O3' U B2022 35.286 120.609 104.169 1.00 38.72 O
ATOM 11 C2' U B2022 37.505 120.952 103.272 1.00 38.24 C
ATOM 12 O2' U B2022 37.159 120.061 102.228 1.00 38.56 O
ATOM 13 C1' U B2022 37.243 122.383 102.825 1.00 37.29 C
ATOM 14 N1 U B2022 38.347 122.900 102.004 1.00 35.66 N
ATOM 15 C2 U B2022 38.067 123.210 100.680 1.00 35.41 C
ATOM 16 O2 U B2022 36.954 123.122 100.199 1.00 33.86 O
ATOM 17 N3 U B2022 39.145 123.629 99.942 1.00 34.40 N
ATOM 18 C4 U B2022 40.445 123.771 100.378 1.00 33.60 C
ATOM 19 O4 U B2022 41.306 124.136 99.582 1.00 31.70 O
ATOM 20 C5 U B2022 40.653 123.462 101.765 1.00 32.68 C
ATOM 21 C6 U B2022 39.623 123.049 102.512 1.00 33.21 C
ATOM 22 P C B2023 34.382 119.703 105.134 1.00 36.96 P
ATOM 23 OP1 C B2023 33.008 119.726 104.600 1.00 39.19 O
ATOM 24 OP2 C B2023 34.631 120.156 106.523 1.00 39.25 O
ATOM 25 O5' C B2023 35.019 118.250 105.016 1.00 36.43 O
TER
ATOM 2 P C A2023 34.382 119.703 105.134 1.00 36.96 P
ATOM 3 OP1 C A2023 33.008 119.726 104.600 1.00 39.19 O
ATOM 4 OP2 C A2023 34.631 120.156 106.523 1.00 39.25 O
ATOM 5 O5' C A2023 35.019 118.250 105.016 1.00 36.43 O
ATOM 6 C5' C A2023 34.437 117.232 104.195 1.00 34.56 C
ATOM 7 C4' C A2023 34.829 115.871 104.713 1.00 33.92 C
ATOM 8 O4' C A2023 36.266 115.692 104.617 1.00 33.31 O
ATOM 9 C3' C A2023 34.503 115.667 106.183 1.00 34.91 C
ATOM 10 O3' C A2023 33.169 115.198 106.312 1.00 36.07 O
ATOM 11 C2' C A2023 35.530 114.632 106.619 1.00 34.23 C
ATOM 12 O2' C A2023 35.170 113.318 106.264 1.00 32.87 O
ATOM 13 C1' C A2023 36.746 115.040 105.783 1.00 33.73 C
ATOM 14 N1 C A2023 37.687 115.948 106.476 1.00 34.94 N
ATOM 15 C2 C A2023 38.507 115.436 107.499 1.00 34.93 C
ATOM 16 O2 C A2023 38.359 114.257 107.869 1.00 33.96 O
ATOM 17 N3 C A2023 39.428 116.246 108.067 1.00 36.06 N
ATOM 18 C4 C A2023 39.532 117.517 107.676 1.00 34.91 C
ATOM 19 N4 C A2023 40.476 118.268 108.244 1.00 37.24 N
ATOM 20 C5 C A2023 38.681 118.073 106.683 1.00 33.62 C
ATOM 21 C6 C A2023 37.784 117.264 106.114 1.00 33.72 C
ATOM 22 P U A2024 32.199 115.847 107.409 1.00 38.87 P
ATOM 23 OP1 U A2024 30.831 115.354 107.101 1.00 40.12 O
ATOM 24 OP2 U A2024 32.457 117.301 107.474 1.00 38.16 O
ATOM 25 O5' U A2024 32.679 115.177 108.768 1.00 37.54 O
TER
ATOM 1 O3' G B2021 40.378 123.387 107.420 1.00 37.81 O
ATOM 2 P U B2022 40.242 121.885 106.880 1.00 37.26 P
ATOM 3 OP1 U B2022 39.850 121.035 108.020 1.00 40.16 O
ATOM 4 OP2 U B2022 41.469 121.561 106.124 1.00 42.19 O
ATOM 5 O5' U B2022 39.031 121.944 105.849 1.00 39.04 O
ATOM 6 C5' U B2022 37.741 122.428 106.246 1.00 35.79 C
ATOM 7 C4' U B2022 36.751 122.271 105.115 1.00 36.94 C
ATOM 8 O4' U B2022 37.126 123.148 104.012 1.00 38.64 O
ATOM 9 C3' U B2022 36.636 120.866 104.523 1.00 38.01 C
ATOM 10 O3' U B2022 35.286 120.609 104.169 1.00 38.72 O
ATOM 11 C2' U B2022 37.505 120.952 103.272 1.00 38.24 C
ATOM 12 O2' U B2022 37.159 120.061 102.228 1.00 38.56 O
ATOM 13 C1' U B2022 37.243 122.383 102.825 1.00 37.29 C
ATOM 14 N1 U B2022 38.347 122.900 102.004 1.00 35.66 N
ATOM 15 C2 U B2022 38.067 123.210 100.680 1.00 35.41 C
ATOM 16 O2 U B2022 36.954 123.122 100.199 1.00 33.86 O
ATOM 17 N3 U B2022 39.145 123.629 99.942 1.00 34.40 N
ATOM 18 C4 U B2022 40.445 123.771 100.378 1.00 33.60 C
ATOM 19 O4 U B2022 41.306 124.136 99.582 1.00 31.70 O
ATOM 20 C5 U B2022 40.653 123.462 101.765 1.00 32.68 C
ATOM 21 C6 U B2022 39.623 123.049 102.512 1.00 33.21 C
ATOM 22 P C B2023 34.382 119.703 105.134 1.00 36.96 P
ATOM 23 OP1 C B2023 33.008 119.726 104.600 1.00 39.19 O
ATOM 24 OP2 C B2023 34.631 120.156 106.523 1.00 39.25 O
ATOM 25 O5' C B2023 35.019 118.250 105.016 1.00 36.43 O
TER
Atoms:
C2: (38.507,115.436,107.499)
OP1: (33.008,119.726,104.600)
OP2: (34.631,120.156,106.523)
C4: (39.532,117.517,107.676)
O5': (35.019,118.250,105.016)
C3': (34.503,115.667,106.183)
C1': (36.746,115.040,105.783)
O4': (36.266,115.692,104.617)
C5': (34.437,117.232,104.195)
P: (34.382,119.703,105.134)
O2: (38.359,114.257,107.869)
C4': (34.829,115.871,104.713)
C2': (35.530,114.632,106.619)
O2': (35.170,113.318,106.264)
N1: (37.687,115.948,106.476)
N3: (39.428,116.246,108.067)
N4: (40.476,118.268,108.244)
C6: (37.784,117.264,106.114)
C5: (38.681,118.073,106.683)
O3': (33.169,115.198,106.312)
OP1: (33.008,119.726,104.600)
OP2: (34.631,120.156,106.523)
C4: (39.532,117.517,107.676)
O5': (35.019,118.250,105.016)
C3': (34.503,115.667,106.183)
C1': (36.746,115.040,105.783)
O4': (36.266,115.692,104.617)
C5': (34.437,117.232,104.195)
P: (34.382,119.703,105.134)
O2: (38.359,114.257,107.869)
C4': (34.829,115.871,104.713)
C2': (35.530,114.632,106.619)
O2': (35.170,113.318,106.264)
N1: (37.687,115.948,106.476)
N3: (39.428,116.246,108.067)
N4: (40.476,118.268,108.244)
C6: (37.784,117.264,106.114)
C5: (38.681,118.073,106.683)
O3': (33.169,115.198,106.312)
C4: (40.445,123.771,100.378)
N3: (39.145,123.629,99.942)
OP1: (39.850,121.035,108.020)
OP2: (41.469,121.561,106.124)
C2: (38.067,123.210,100.680)
C1': (37.243,122.383,102.825)
C3': (36.636,120.866,104.523)
O5': (39.031,121.944,105.849)
O4': (37.126,123.148,104.012)
C5': (37.741,122.428,106.246)
P: (40.242,121.885,106.880)
C4': (36.751,122.271,105.115)
C2': (37.505,120.952,103.272)
O2': (37.159,120.061,102.228)
N1: (38.347,122.900,102.004)
O4: (41.306,124.136,99.582)
O2: (36.954,123.122,100.199)
C6: (39.623,123.049,102.512)
C5: (40.653,123.462,101.765)
O3': (35.286,120.609,104.169)
N3: (39.145,123.629,99.942)
OP1: (39.850,121.035,108.020)
OP2: (41.469,121.561,106.124)
C2: (38.067,123.210,100.680)
C1': (37.243,122.383,102.825)
C3': (36.636,120.866,104.523)
O5': (39.031,121.944,105.849)
O4': (37.126,123.148,104.012)
C5': (37.741,122.428,106.246)
P: (40.242,121.885,106.880)
C4': (36.751,122.271,105.115)
C2': (37.505,120.952,103.272)
O2': (37.159,120.061,102.228)
N1: (38.347,122.900,102.004)
O4: (41.306,124.136,99.582)
O2: (36.954,123.122,100.199)
C6: (39.623,123.049,102.512)
C5: (40.653,123.462,101.765)
O3': (35.286,120.609,104.169)
Image (generated by PyMOL):