Doublet info:
Details
Nucleotide types:
CU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1ZDH:S7:S6
Extra
PDB:
ATOM 1 O3' U A 6 -15.675 106.220 5.675 0.60 50.68 O
ATOM 2 P C A 7 -14.909 107.341 6.566 0.60 53.40 P
ATOM 3 OP1 C A 7 -15.187 106.950 7.995 0.60 55.40 O
ATOM 4 OP2 C A 7 -15.287 108.728 6.106 0.60 50.82 O
ATOM 5 O5' C A 7 -13.349 107.049 6.325 0.60 52.51 O
ATOM 6 C5' C A 7 -12.706 105.973 7.040 0.60 50.04 C
ATOM 7 C4' C A 7 -11.209 106.141 7.013 0.60 48.68 C
ATOM 8 O4' C A 7 -10.725 105.873 5.670 0.60 46.68 O
ATOM 9 C3' C A 7 -10.693 107.518 7.402 0.60 48.24 C
ATOM 10 O3' C A 7 -9.426 107.374 8.043 0.60 50.70 O
ATOM 11 C2' C A 7 -10.460 108.186 6.042 0.60 46.84 C
ATOM 12 O2' C A 7 -9.444 109.184 6.131 0.60 47.52 O
ATOM 13 C1' C A 7 -10.035 106.997 5.161 0.60 43.75 C
ATOM 14 N1 C A 7 -10.355 107.077 3.719 0.60 39.43 N
ATOM 15 C2 C A 7 -9.390 107.590 2.841 0.60 37.02 C
ATOM 16 O2 C A 7 -8.290 107.981 3.312 0.60 37.25 O
ATOM 17 N3 C A 7 -9.664 107.648 1.507 0.60 35.15 N
ATOM 18 C4 C A 7 -10.855 107.229 1.051 0.60 34.26 C
ATOM 19 N4 C A 7 -11.093 107.309 -0.270 0.60 32.90 N
ATOM 20 C5 C A 7 -11.861 106.713 1.930 0.60 34.06 C
ATOM 21 C6 C A 7 -11.568 106.653 3.241 0.60 36.99 C
ATOM 22 P A A 8 -9.342 107.050 9.622 0.60 49.77 P
ATOM 23 OP1 A A 8 -10.327 105.987 10.024 0.60 51.52 O
ATOM 24 OP2 A A 8 -9.333 108.365 10.380 0.60 49.87 O
ATOM 25 O5' A A 8 -7.856 106.473 9.744 0.60 50.29 O
TER
ATOM 1 O3' A B 5 -14.558 104.533 -0.423 0.60 46.55 O
ATOM 2 P U B 6 -14.952 106.058 -0.109 0.60 47.50 P
ATOM 3 OP1 U B 6 -16.272 106.267 -0.768 0.60 47.38 O
ATOM 4 OP2 U B 6 -13.799 106.972 -0.463 0.60 47.17 O
ATOM 5 O5' U B 6 -15.140 106.064 1.476 0.60 47.24 O
ATOM 6 C5' U B 6 -15.973 107.048 2.112 0.60 47.21 C
ATOM 7 C4' U B 6 -16.441 106.512 3.435 0.60 47.58 C
ATOM 8 O4' U B 6 -17.310 105.367 3.196 0.60 46.91 O
ATOM 9 C3' U B 6 -15.300 106.005 4.304 0.60 48.04 C
ATOM 10 O3' U B 6 -15.675 106.220 5.675 0.60 50.68 O
ATOM 11 C2' U B 6 -15.272 104.508 3.956 0.60 48.11 C
ATOM 12 O2' U B 6 -14.671 103.709 4.958 0.60 50.48 O
ATOM 13 C1' U B 6 -16.765 104.205 3.787 0.60 45.33 C
ATOM 14 N1 U B 6 -17.142 103.055 2.945 0.00 42.48 N
ATOM 15 C2 U B 6 -18.046 102.145 3.476 0.00 41.36 C
ATOM 16 O2 U B 6 -18.506 102.243 4.603 0.00 41.15 O
ATOM 17 N3 U B 6 -18.393 101.112 2.640 0.00 39.60 N
ATOM 18 C4 U B 6 -17.935 100.894 1.357 0.00 39.33 C
ATOM 19 O4 U B 6 -18.342 99.917 0.727 0.00 38.13 O
ATOM 20 C5 U B 6 -16.997 101.870 0.884 0.00 39.97 C
ATOM 21 C6 U B 6 -16.640 102.891 1.676 0.00 41.06 C
ATOM 22 P C B 7 -14.909 107.341 6.566 0.60 53.40 P
ATOM 23 OP1 C B 7 -15.187 106.950 7.995 0.60 55.40 O
ATOM 24 OP2 C B 7 -15.287 108.728 6.106 0.60 50.82 O
ATOM 25 O5' C B 7 -13.349 107.049 6.325 0.60 52.51 O
TER
ATOM 2 P C A 7 -14.909 107.341 6.566 0.60 53.40 P
ATOM 3 OP1 C A 7 -15.187 106.950 7.995 0.60 55.40 O
ATOM 4 OP2 C A 7 -15.287 108.728 6.106 0.60 50.82 O
ATOM 5 O5' C A 7 -13.349 107.049 6.325 0.60 52.51 O
ATOM 6 C5' C A 7 -12.706 105.973 7.040 0.60 50.04 C
ATOM 7 C4' C A 7 -11.209 106.141 7.013 0.60 48.68 C
ATOM 8 O4' C A 7 -10.725 105.873 5.670 0.60 46.68 O
ATOM 9 C3' C A 7 -10.693 107.518 7.402 0.60 48.24 C
ATOM 10 O3' C A 7 -9.426 107.374 8.043 0.60 50.70 O
ATOM 11 C2' C A 7 -10.460 108.186 6.042 0.60 46.84 C
ATOM 12 O2' C A 7 -9.444 109.184 6.131 0.60 47.52 O
ATOM 13 C1' C A 7 -10.035 106.997 5.161 0.60 43.75 C
ATOM 14 N1 C A 7 -10.355 107.077 3.719 0.60 39.43 N
ATOM 15 C2 C A 7 -9.390 107.590 2.841 0.60 37.02 C
ATOM 16 O2 C A 7 -8.290 107.981 3.312 0.60 37.25 O
ATOM 17 N3 C A 7 -9.664 107.648 1.507 0.60 35.15 N
ATOM 18 C4 C A 7 -10.855 107.229 1.051 0.60 34.26 C
ATOM 19 N4 C A 7 -11.093 107.309 -0.270 0.60 32.90 N
ATOM 20 C5 C A 7 -11.861 106.713 1.930 0.60 34.06 C
ATOM 21 C6 C A 7 -11.568 106.653 3.241 0.60 36.99 C
ATOM 22 P A A 8 -9.342 107.050 9.622 0.60 49.77 P
ATOM 23 OP1 A A 8 -10.327 105.987 10.024 0.60 51.52 O
ATOM 24 OP2 A A 8 -9.333 108.365 10.380 0.60 49.87 O
ATOM 25 O5' A A 8 -7.856 106.473 9.744 0.60 50.29 O
TER
ATOM 1 O3' A B 5 -14.558 104.533 -0.423 0.60 46.55 O
ATOM 2 P U B 6 -14.952 106.058 -0.109 0.60 47.50 P
ATOM 3 OP1 U B 6 -16.272 106.267 -0.768 0.60 47.38 O
ATOM 4 OP2 U B 6 -13.799 106.972 -0.463 0.60 47.17 O
ATOM 5 O5' U B 6 -15.140 106.064 1.476 0.60 47.24 O
ATOM 6 C5' U B 6 -15.973 107.048 2.112 0.60 47.21 C
ATOM 7 C4' U B 6 -16.441 106.512 3.435 0.60 47.58 C
ATOM 8 O4' U B 6 -17.310 105.367 3.196 0.60 46.91 O
ATOM 9 C3' U B 6 -15.300 106.005 4.304 0.60 48.04 C
ATOM 10 O3' U B 6 -15.675 106.220 5.675 0.60 50.68 O
ATOM 11 C2' U B 6 -15.272 104.508 3.956 0.60 48.11 C
ATOM 12 O2' U B 6 -14.671 103.709 4.958 0.60 50.48 O
ATOM 13 C1' U B 6 -16.765 104.205 3.787 0.60 45.33 C
ATOM 14 N1 U B 6 -17.142 103.055 2.945 0.00 42.48 N
ATOM 15 C2 U B 6 -18.046 102.145 3.476 0.00 41.36 C
ATOM 16 O2 U B 6 -18.506 102.243 4.603 0.00 41.15 O
ATOM 17 N3 U B 6 -18.393 101.112 2.640 0.00 39.60 N
ATOM 18 C4 U B 6 -17.935 100.894 1.357 0.00 39.33 C
ATOM 19 O4 U B 6 -18.342 99.917 0.727 0.00 38.13 O
ATOM 20 C5 U B 6 -16.997 101.870 0.884 0.00 39.97 C
ATOM 21 C6 U B 6 -16.640 102.891 1.676 0.00 41.06 C
ATOM 22 P C B 7 -14.909 107.341 6.566 0.60 53.40 P
ATOM 23 OP1 C B 7 -15.187 106.950 7.995 0.60 55.40 O
ATOM 24 OP2 C B 7 -15.287 108.728 6.106 0.60 50.82 O
ATOM 25 O5' C B 7 -13.349 107.049 6.325 0.60 52.51 O
TER
Atoms:
C2: (-9.390,107.590,2.841)
OP1: (-15.187,106.950,7.995)
OP2: (-15.287,108.728,6.106)
C4: (-10.855,107.229,1.051)
O5': (-13.349,107.049,6.325)
C3': (-10.693,107.518,7.402)
C1': (-10.035,106.997,5.161)
O4': (-10.725,105.873,5.670)
C5': (-12.706,105.973,7.040)
P: (-14.909,107.341,6.566)
O2: (-8.290,107.981,3.312)
C4': (-11.209,106.141,7.013)
C2': (-10.460,108.186,6.042)
O2': (-9.444,109.184,6.131)
N1: (-10.355,107.077,3.719)
N3: (-9.664,107.648,1.507)
N4: (-11.093,107.309,-0.270)
C6: (-11.568,106.653,3.241)
C5: (-11.861,106.713,1.930)
O3': (-9.426,107.374,8.043)
OP1: (-15.187,106.950,7.995)
OP2: (-15.287,108.728,6.106)
C4: (-10.855,107.229,1.051)
O5': (-13.349,107.049,6.325)
C3': (-10.693,107.518,7.402)
C1': (-10.035,106.997,5.161)
O4': (-10.725,105.873,5.670)
C5': (-12.706,105.973,7.040)
P: (-14.909,107.341,6.566)
O2: (-8.290,107.981,3.312)
C4': (-11.209,106.141,7.013)
C2': (-10.460,108.186,6.042)
O2': (-9.444,109.184,6.131)
N1: (-10.355,107.077,3.719)
N3: (-9.664,107.648,1.507)
N4: (-11.093,107.309,-0.270)
C6: (-11.568,106.653,3.241)
C5: (-11.861,106.713,1.930)
O3': (-9.426,107.374,8.043)
C4: (-17.935,100.894,1.357)
N3: (-18.393,101.112,2.640)
OP1: (-16.272,106.267,-0.768)
OP2: (-13.799,106.972,-0.463)
C2: (-18.046,102.145,3.476)
C1': (-16.765,104.205,3.787)
C3': (-15.300,106.005,4.304)
O5': (-15.140,106.064,1.476)
O4': (-17.310,105.367,3.196)
C5': (-15.973,107.048,2.112)
P: (-14.952,106.058,-0.109)
C4': (-16.441,106.512,3.435)
C2': (-15.272,104.508,3.956)
O2': (-14.671,103.709,4.958)
N1: (-17.142,103.055,2.945)
O4: (-18.342,99.917,0.727)
O2: (-18.506,102.243,4.603)
C6: (-16.640,102.891,1.676)
C5: (-16.997,101.870,0.884)
O3': (-15.675,106.220,5.675)
N3: (-18.393,101.112,2.640)
OP1: (-16.272,106.267,-0.768)
OP2: (-13.799,106.972,-0.463)
C2: (-18.046,102.145,3.476)
C1': (-16.765,104.205,3.787)
C3': (-15.300,106.005,4.304)
O5': (-15.140,106.064,1.476)
O4': (-17.310,105.367,3.196)
C5': (-15.973,107.048,2.112)
P: (-14.952,106.058,-0.109)
C4': (-16.441,106.512,3.435)
C2': (-15.272,104.508,3.956)
O2': (-14.671,103.709,4.958)
N1: (-17.142,103.055,2.945)
O4: (-18.342,99.917,0.727)
O2: (-18.506,102.243,4.603)
C6: (-16.640,102.891,1.676)
C5: (-16.997,101.870,0.884)
O3': (-15.675,106.220,5.675)
Image (generated by PyMOL):